FvH4_7g34100

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005922
Physical Location & Seq
Forward (+)
24089985 .. 24090908
924 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g34100.t1

Sequence Viewer

Length: 924 bp
ATGGCCTCGAGAGTTCGTCATCTTGCTCCTCTGGTTCTCAGCTTACTCTGGTTAATTGCTAGTCCACCCCTGGTTTCGTGCCATTTGAGACCGCCGGACACCTTCAGTTACCACGGAGGGCTTCTGTTGACGGGAAAACTCGACATTTCAATCTTCTTCTACGGTCCAACTGGACGCACACAAAAGCGTGTGGTGAGGTCTTTCATCAAGTCGCTGAACCATGGTGGTGGCACCCCCAAGCCTCGGGTAACATCTTGGTGGGACACTGTCGAGAGCTACCAATCCATATCTTCCCCCGATCATTCTGCGCCCAAAATCGCAGTCAAAGTGGTGAGTCAAATAACCGATAGAAGTTACTCCCTGGGGAAAGTCATCACCATTGACTTCATAAAGTCGATGGTCAAGACGGCCACCGCCGGGAAGCCTCCTGCCGGCCTTGTCGTCATATTCACCGGTAAGGAATGTGCGGTCGCATCCCTTTGCAGGGGAAGATGCTATGATCACGGAGTCATCGATAACCAGCCTTATCTCATCGTCGGAAACCCCGAAGTCGAGTGCCCCGGTGCTTGTGCCTGGCCCTTCTTGAAGTCCAGCTACGGCCCTCCAGGCATCACGCTCAAACCACCAAACGGAAACCCCGTCGTCGATGCCATTCTAGTCAACTTTGCTGCCGGGTTGGCTGCTGCCGTCACCAATCCATTCATGACCGGATTTTCCAAACCAGGACCTAAATCGTGGCCCTTAGAGGCCAGCACTATGTGTGAGGGTATGTTCGCAAGAGGGGCGTCCCCTGGGAATCCCGGGAAGGTGGCGTTGGACGGGAAATCCGGTGGGGCGTTCAATGCTTATGGACTCAACGGTATGAAGTTCTTGCTACCTGCGCTGTGGAATCCACGAACATCATCATGCTGGACCCCGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

308

Amino Acids

32.73

Weight (kDa)

9.54

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 36 - 306 9.3e-84 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 886
AccB1I GGYRCC 1 cut(s) 230
AciI CCGC 3 cut(s) 92, 414, 467
AcoI YGGCCR 1 cut(s) 408
AcuI CTGAAG 1 cut(s) 88
AcyI GRCGYC 1 cut(s) 785
AdeI CACNNNGTG 1 cut(s) 759
AfiI CCNNNNNNNGG 6 cut(s) 243, 417, 431, 483, 484, 629
AgeI ACCGGT 1 cut(s) 452
AgsI TTSAA 3 cut(s) 150, 586, 841
AjnI CCWGG 6 cut(s) 69, 360, 572, 604, 721, 790
AjuI GAANNNNNNNTTGG 2 cut(s) 797, 829
AluBI AGCT 3 cut(s) 42, 276, 594
AluI AGCT 3 cut(s) 42, 276, 594
Alw26I GTCTC 1 cut(s) 82
Ama87I CYCGRG 3 cut(s) 7, 243, 800
AoxI GGCC 7 cut(s) 3, 408, 433, 575, 598, 737, 747
ApeKI GCWGC 3 cut(s) 668, 680, 683
ArsI GACNNNNNNTTYG 2 cut(s) 306, 338
AsiGI ACCGGT 1 cut(s) 452
AspLEI GCGC 2 cut(s) 310, 883
AspS9I GGNCC 6 cut(s) 164, 576, 599, 725, 738, 912
AsuC2I CCSGG 5 cut(s) 418, 561, 673, 801, 802
AsuHPI GGTGA 5 cut(s) 205, 343, 367, 442, 682
AvaI CYCGRG 3 cut(s) 7, 243, 800
AvaII GGWCC 3 cut(s) 164, 725, 912
BaeGI GKGCMC 1 cut(s) 560
BanI GGYRCC 1 cut(s) 230
BarI GAAGNNNNNNTAC 2 cut(s) 578, 610
BbvI GCAGC 3 cut(s) 655, 667, 670
BccI CCATC 1 cut(s) 391
BceAI ACGGC 3 cut(s) 423, 613, 671
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BciT130I CCWGG 6 cut(s) 71, 362, 574, 606, 723, 792
BclI TGATCA 1 cut(s) 499
BcnI CCSGG 5 cut(s) 418, 561, 673, 801, 802
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 2 cut(s) 60, 656
BfuAI ACCTGC 1 cut(s) 886
BglI GCCNNNNNGGC 2 cut(s) 606, 677
BisI GCNGC 3 cut(s) 669, 681, 684
BlsI GCNGC 3 cut(s) 670, 682, 685
Bme18I GGWCC 3 cut(s) 164, 725, 912
BmeT110I CYCGRG 3 cut(s) 7, 243, 800
BmgT120I GGNCC 6 cut(s) 164, 576, 599, 725, 738, 912
BmiI GGNNCC 2 cut(s) 232, 914
BmsI GCATC 4 cut(s) 482, 482, 618, 637
BpmI CTGGAG 1 cut(s) 588
BpuMI CCSGG 5 cut(s) 418, 561, 673, 801, 802
Bsa29I ATCGAT 1 cut(s) 513
BsaHI GRCGYC 1 cut(s) 785
BsaI GGTCTC 1 cut(s) 82
BsaWI WCCGGW 3 cut(s) 452, 707, 827
Bsc4I CCNNNNNNNGG 6 cut(s) 243, 417, 431, 483, 484, 629
Bse118I RCCGGY 2 cut(s) 431, 452
Bse1I ACTGG 1 cut(s) 175
BseBI CCWGG 6 cut(s) 71, 362, 574, 606, 723, 792
BseCI ATCGAT 1 cut(s) 513
BseGI GGATG 1 cut(s) 473
BseLI CCNNNNNNNGG 6 cut(s) 243, 417, 431, 483, 484, 629
BseMII CTCAG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 175
BseRI GAGGAG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 560
BseXI GCAGC 3 cut(s) 655, 667, 670
Bsh1285I CGRYCG 1 cut(s) 471
BshFI GGCC 7 cut(s) 5, 410, 435, 577, 600, 739, 749
BshNI GGYRCC 1 cut(s) 230
BshTI ACCGGT 1 cut(s) 452
BshVI ATCGAT 1 cut(s) 513
BsiEI CGRYCG 1 cut(s) 471
BsiHKCI CYCGRG 3 cut(s) 7, 243, 800
BsiSI CCGG 9 cut(s) 95, 417, 432, 453, 561, 672, 708, 801, 828
BslFI GGGAC 2 cut(s) 275, 772
BslI CCNNNNNNNGG 6 cut(s) 243, 417, 431, 483, 484, 629
BsmAI GTCTC 1 cut(s) 82
BsmFI GGGAC 2 cut(s) 275, 772
BsnI GGCC 7 cut(s) 5, 410, 435, 577, 600, 739, 749
Bso31I GGTCTC 1 cut(s) 82
BsoBI CYCGRG 3 cut(s) 7, 243, 800
Bsp1286I GDGCHC 1 cut(s) 560
Bsp143I GATC 2 cut(s) 298, 499
Bsp19I CCATGG 1 cut(s) 220
BspACI CCGC 3 cut(s) 92, 414, 467
BspANI GGCC 7 cut(s) 5, 410, 435, 577, 600, 739, 749
BspCNI CTCAG 1 cut(s) 51
BspDI ATCGAT 1 cut(s) 513
BspHI TCATGA 1 cut(s) 702
BspLI GGNNCC 2 cut(s) 232, 914
BspMI ACCTGC 1 cut(s) 886
BspT107I GGYRCC 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 82
BsrFI RCCGGY 2 cut(s) 431, 452
BsrI ACTGG 1 cut(s) 175
BssAI RCCGGY 2 cut(s) 431, 452
BssMI GATC 2 cut(s) 298, 499
BssNI GRCGYC 1 cut(s) 785
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 6 cut(s) 71, 362, 574, 606, 723, 792
Bst4CI ACNGT 3 cut(s) 164, 268, 860
BstACI GRCGYC 1 cut(s) 785
BstC8I GCNNGC 2 cut(s) 433, 751
BstDEI CTNAG 2 cut(s) 38, 742
BstDSI CCRYGG 2 cut(s) 112, 220
BstF5I GGATG 1 cut(s) 473
BstHHI GCGC 2 cut(s) 310, 883
BstKTI GATC 2 cut(s) 301, 502
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 2 cut(s) 298, 499
BstMCI CGRYCG 1 cut(s) 471
BstMWI GCNNNNNNNGC 5 cut(s) 606, 677, 782, 842, 880
BstNI CCWGG 6 cut(s) 71, 362, 574, 606, 723, 792
BstSLI GKGCMC 1 cut(s) 560
BstV1I GCAGC 3 cut(s) 655, 667, 670
BstXI CCANNNNNNTGG 1 cut(s) 227
Bsu15I ATCGAT 1 cut(s) 513
BsuRI GGCC 7 cut(s) 5, 410, 435, 577, 600, 739, 749
BsuTUI ATCGAT 1 cut(s) 513
BtgI CCRYGG 2 cut(s) 112, 220
BtsCI GGATG 1 cut(s) 473
BtsIMutI CAGTG 1 cut(s) 264
BveI ACCTGC 1 cut(s) 886
Cac8I GCNNGC 2 cut(s) 433, 751
CciI TCATGA 1 cut(s) 702
CfoI GCGC 2 cut(s) 310, 883
Cfr10I RCCGGY 2 cut(s) 431, 452
Cfr13I GGNCC 6 cut(s) 164, 576, 599, 725, 738, 912
Cfr9I CCCGGG 1 cut(s) 800
ClaI ATCGAT 1 cut(s) 513
CseI GACGC 2 cut(s) 183, 774
CspAI ACCGGT 1 cut(s) 452
CviAII CATG 3 cut(s) 221, 703, 906
DdeI CTNAG 2 cut(s) 38, 742
DpnI GATC 2 cut(s) 300, 501
DpnII GATC 2 cut(s) 298, 499
DraIII CACNNNGTG 1 cut(s) 759
EaeI YGGCCR 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 3 cut(s) 164, 725, 912
Eco57I CTGAAG 1 cut(s) 88
Eco88I CYCGRG 3 cut(s) 7, 243, 800
EcoO109I RGGNCCY 1 cut(s) 725
EcoRII CCWGG 6 cut(s) 69, 360, 572, 604, 721, 790
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 3 cut(s) 224, 706, 909
FaqI GGGAC 2 cut(s) 275, 772
FatI CATG 3 cut(s) 220, 702, 905
FbaI TGATCA 1 cut(s) 499
Fnu4HI GCNGC 3 cut(s) 669, 681, 684
FokI GGATG 1 cut(s) 460
Fsp4HI GCNGC 3 cut(s) 669, 681, 684
FspBI CTAG 2 cut(s) 60, 656
GlaI GCGC 2 cut(s) 309, 882
GluI GCNGC 3 cut(s) 669, 681, 684
GsuI CTGGAG 1 cut(s) 588
HaeIII GGCC 7 cut(s) 5, 410, 435, 577, 600, 739, 749
HapII CCGG 9 cut(s) 95, 417, 432, 453, 561, 672, 708, 801, 828
HgaI GACGC 2 cut(s) 183, 774
HhaI GCGC 2 cut(s) 310, 883
Hin1I GRCGYC 1 cut(s) 785
Hin1II CATG 3 cut(s) 224, 706, 909
Hin6I GCGC 2 cut(s) 308, 881
HinP1I GCGC 2 cut(s) 308, 881
HincII GTYRAC 2 cut(s) 129, 661
HindII GTYRAC 2 cut(s) 129, 661
HinfI GANTC 5 cut(s) 334, 507, 796, 852, 889
HpaII CCGG 9 cut(s) 95, 417, 432, 453, 561, 672, 708, 801, 828
HphI GGTGA 5 cut(s) 205, 343, 367, 442, 682
Hpy166II GTNNAC 3 cut(s) 65, 129, 661
Hpy188I TCNGA 1 cut(s) 539
Hpy188III TCNNGA 5 cut(s) 9, 271, 403, 583, 703
Hpy8I GTNNAC 3 cut(s) 65, 129, 661
Hpy99I CGWCG 3 cut(s) 539, 644, 647
HpyAV CCTTC 3 cut(s) 112, 589, 799
HpyCH4III ACNGT 3 cut(s) 164, 268, 860
HpyCH4V TGCA 1 cut(s) 483
HpyF10VI GCNNNNNNNGC 5 cut(s) 606, 677, 782, 842, 880
HpyF3I CTNAG 2 cut(s) 38, 742
Hsp92I GRCGYC 1 cut(s) 785
Hsp92II CATG 3 cut(s) 224, 706, 909
HspAI GCGC 2 cut(s) 308, 881
KroI GCCGGC 1 cut(s) 431
KroNI GCCGGC 1 cut(s) 433
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 2 cut(s) 298, 499
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 3 cut(s) 655, 667, 670
LweI GCATC 4 cut(s) 482, 482, 618, 637
MaeI CTAG 2 cut(s) 60, 656
MaeIII GTNAC 4 cut(s) 107, 247, 353, 688
MalI GATC 2 cut(s) 300, 501
MboI GATC 2 cut(s) 298, 499
MboII GAAGA 4 cut(s) 145, 148, 282, 501
MhlI GDGCHC 1 cut(s) 560
MluCI AATT 1 cut(s) 54
MlyI GAGTC 3 cut(s) 343, 516, 846
MmeI TCCRAC 3 cut(s) 191, 517, 795
MroNI GCCGGC 1 cut(s) 431
MseI TTAA 1 cut(s) 53
MslI CAYNNNNRTG 3 cut(s) 225, 256, 904
MspI CCGG 9 cut(s) 95, 417, 432, 453, 561, 672, 708, 801, 828
MvaI CCWGG 6 cut(s) 71, 362, 574, 606, 723, 792
MwoI GCNNNNNNNGC 5 cut(s) 606, 677, 782, 842, 880
NaeI GCCGGC 1 cut(s) 433
NciI CCSGG 5 cut(s) 418, 561, 673, 801, 802
NcoI CCATGG 1 cut(s) 220
NdeII GATC 2 cut(s) 298, 499
NgoMIV GCCGGC 1 cut(s) 431
NlaIII CATG 3 cut(s) 224, 706, 909
NlaIV GGNNCC 2 cut(s) 232, 914
NmuCI GTSAC 1 cut(s) 688
PaeR7I CTCGAG 1 cut(s) 7
PagI TCATGA 1 cut(s) 702
PasI CCCWGGG 2 cut(s) 361, 791
PcsI WCGNNNNNNNCGW 3 cut(s) 510, 543, 636
PdiI GCCGGC 1 cut(s) 433
PfeI GAWTC 2 cut(s) 796, 889
PflFI GACNNNGTC 1 cut(s) 266
PinAI ACCGGT 1 cut(s) 452
PkrI GCNGC 3 cut(s) 670, 682, 685
PleI GAGTC 3 cut(s) 342, 515, 846
PpsI GAGTC 3 cut(s) 342, 515, 846
PpuMI RGGWCCY 1 cut(s) 725
Psp5II RGGWCCY 1 cut(s) 725
Psp6I CCWGG 6 cut(s) 69, 360, 572, 604, 721, 790
PspGI CCWGG 6 cut(s) 69, 360, 572, 604, 721, 790
PspN4I GGNNCC 2 cut(s) 232, 914
PspPI GGNCC 6 cut(s) 164, 576, 599, 725, 738, 912
PspPPI RGGWCCY 1 cut(s) 725
PsyI GACNNNGTC 1 cut(s) 266
RseI CAYNNNNRTG 3 cut(s) 225, 256, 904
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 3 cut(s) 669, 681, 684
Sau3AI GATC 2 cut(s) 298, 499
Sau96I GGNCC 6 cut(s) 164, 576, 599, 725, 738, 912
SchI GAGTC 3 cut(s) 343, 516, 846
SduI GDGCHC 1 cut(s) 560
SetI ASST 8 cut(s) 44, 104, 200, 278, 596, 730, 810, 880
SfaNI GCATC 4 cut(s) 482, 482, 618, 637
Sfr274I CTCGAG 1 cut(s) 7
SinI GGWCC 3 cut(s) 164, 725, 912
SlaI CTCGAG 1 cut(s) 7
SmaI CCCGGG 1 cut(s) 802
SmiMI CAYNNNNRTG 3 cut(s) 225, 256, 904
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 1 cut(s) 54
SsiI CCGC 3 cut(s) 92, 414, 467
SspMI CTAG 2 cut(s) 60, 656
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 3 cut(s) 164, 268, 860
TaqI TCGA 7 cut(s) 8, 141, 270, 395, 513, 552, 645
TasI AATT 1 cut(s) 54
TfiI GAWTC 2 cut(s) 796, 889
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 688
TseI GCWGC 3 cut(s) 668, 680, 683
Tsp45I GTSAC 1 cut(s) 688
TspDTI ATGAA 4 cut(s) 193, 376, 691, 878
TspGWI ACGGA 3 cut(s) 129, 519, 645
TspMI CCCGGG 1 cut(s) 800
TspRI CASTG 1 cut(s) 271
Tth111I GACNNNGTC 1 cut(s) 266
VpaK11BI GGWCC 3 cut(s) 164, 725, 912
XhoI CTCGAG 1 cut(s) 7
XmaI CCCGGG 1 cut(s) 800
XspI CTAG 2 cut(s) 60, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.