Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005922

Physical Location & Seq

Genomic Coordinates Reverse (-)

67463458 .. 67464389

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G039990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCCTTATCAAGATCAAGAGTTCATCCTGATCAGCTTGCTCTGGTTCTCAGTTTACTCTTGTTAATTACTACTCCATCCCTGGTTTCGGGGCACGTTAAACCCCCAGGCACCATCTGTTACAATGGAGGGCTACTCCTGACCGGCAAACTCGACCTTTCAATCTTCTTCTATGGTGCAATTGGGCGCACACAAAAGCTTGTCGTCAGGAATTTCATCAAGTCCCTGAATCATGGTGGTGGCACCCTGAAGCCTCGGGTAACATCTGTTAAAGTGGTGAGTCAAATAACCGAGAAAGGTTACTCCCTGGGGAAGGTGATCACCATTGACTTCATAAGGTCGATGATCAAAAAAGCCACCGCCGGGAAGCCTCCTGCCTCTCTTGTCGTCATATTCACCGATAAGGAAAGTGCGGTCGCATCCCTTTGCAGGGGAAAATGCTATGATCACGGAGTCATAGATAACCAGCCCTATCTCATCGTCGGAAACCCCGAAGTCGAGTGCCCCGATGCTTGTGGCTGGCCCTTCATGAAGTCCAGCTACAATCCAGGCATCACCCTCACACCGCCAAACGGCAACCCCGCCGTCGATGCTATTCTAGTCAACTTTGCTGCCGGTTTGGCTGCTGCCGTCACCAATCCATTCAACACCGGATTTTCCAAACCAGGACCCAAAACCTGGCCGCTGGAGGCCAGCACTGTTTGTAACGGTATATTCGCAAGCGGGTCGTTCCCGGGGAATCCCGGCAAGGTGGAGGTGGACGCGAGAACAGGTGCTGCTTTCAATGCTCATGGATTGAAGGGTATGAAGTTTTTGCTTCCTGCGCTGTGGAATCCACAAACATCATCATGCTGGACCCCGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

288

Amino Acids

30.5

Weight (kDa)

9.47

Isoelectric Point (pI)

17.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phi_1	PF04674	41 - 78	9.6e-06	Phosphate-induced protein 1 conserved region
Phi_1	PF04674	87 - 287	5.4e-62	Phosphate-induced protein 1 conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005922)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g52250 FvH4_7g34090 FvH4_7g34100
malus_domestica	MD01G1237200.v1.1 MD07G1309800.v1.1
prunus_persica	Prupe.2G327500_v2.0.a1
pyrus_communis	pycom03g08340 pycom07g28180
rosa_chinensis	RchiOBHm_Chr1g0384371 RchiOBHm_Chr1g0384381
rosa_laevigata	RLG00000026043 RLG00000026044
rosa_multiflora	Rmu_co8495263.1_g000001 Rmu_sc0016737.1_g000008
rosa_roxburghii	Rroxscaffold_4G00276720 Rroxscaffold_4G00276730
rosa_rugosa	Rorug01G0447300 Rorug01G0447300
rosa_samantha	Rh1AG472500 Rh1AG472600 Rh1BG430300 Rh1BG430400 Rh1CG443300 Rh1CG443400 Rh1DG462900 Rh1DG463000
rosa_wichuraiana	Rw1G039990 Rw1G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	110, 242
AccB7I	CCANNNNNTGG	1 cut(s)	678
AccII	CGCG	1 cut(s)	764
AciI	CCGC	6 cut(s)	360, 413, 566, 582, 683, 723
AcoI	YGGCCR	1 cut(s)	680
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	269
AfiI	CCNNNNNNNGG	7 cut(s)	88, 313, 363, 429, 430, 572, 678
AgsI	TTSAA	4 cut(s)	162, 646, 784, 799
AjnI	CCWGG	6 cut(s)	81, 106, 306, 547, 664, 677
AluBI	AGCT	3 cut(s)	37, 199, 540
AluI	AGCT	3 cut(s)	37, 199, 540
AlwNI	CAGNNNCTG	1 cut(s)	776
Ama87I	CYCGRG	2 cut(s)	255, 733
AoxI	GGCC	4 cut(s)	3, 521, 680, 690
ApeKI	GCWGC	4 cut(s)	611, 623, 626, 776
ApoI	RAATTY	1 cut(s)	211
AspLEI	GCGC	2 cut(s)	189, 826
AspS9I	GGNCC	3 cut(s)	522, 668, 855
AsuC2I	CCSGG	4 cut(s)	364, 734, 735, 744
AsuHPI	GGTGA	6 cut(s)	289, 313, 328, 388, 547, 625
AvaI	CYCGRG	2 cut(s)	255, 733
AvaII	GGWCC	2 cut(s)	668, 855
BaeGI	GKGCMC	2 cut(s)	96, 506
BanI	GGYRCC	2 cut(s)	110, 242
BarI	GAAGNNNNNNTAC	2 cut(s)	524, 556
BbvI	GCAGC	4 cut(s)	598, 610, 613, 763
BccI	CCATC	2 cut(s)	85, 122
BceAI	ACGGC	3 cut(s)	569, 589, 614
BcgI	CGANNNNNNTGC	2 cut(s)	708, 742
BciT130I	CCWGG	6 cut(s)	83, 108, 308, 549, 666, 679
BclI	TGATCA	4 cut(s)	31, 318, 345, 445
BcnI	CCSGG	4 cut(s)	364, 734, 735, 744
BfaI	CTAG	1 cut(s)	599
BglI	GCCNNNNNGGC	1 cut(s)	620
BisI	GCNGC	5 cut(s)	612, 624, 627, 683, 777
BlsI	GCNGC	5 cut(s)	613, 625, 628, 684, 778
Bme18I	GGWCC	2 cut(s)	668, 855
BmeT110I	CYCGRG	2 cut(s)	255, 733
BmgT120I	GGNCC	3 cut(s)	522, 668, 855
BmiI	GGNNCC	4 cut(s)	112, 244, 670, 857
BmsI	GCATC	4 cut(s)	428, 499, 561, 580
BplI	GAGNNNNNCTC	2 cut(s)	120, 152
BpmI	CTGGAG	1 cut(s)	707
BpuMI	CCSGG	4 cut(s)	364, 734, 735, 744
BsaJI	CCNNGG	7 cut(s)	81, 106, 254, 306, 307, 733, 734
BsaWI	WCCGGW	1 cut(s)	650
Bsc4I	CCNNNNNNNGG	7 cut(s)	88, 313, 363, 429, 430, 572, 678
Bse118I	RCCGGY	2 cut(s)	143, 614
BseBI	CCWGG	6 cut(s)	83, 108, 308, 549, 666, 679
BseDI	CCNNGG	7 cut(s)	81, 106, 254, 306, 307, 733, 734
BseGI	GGATG	3 cut(s)	25, 77, 419
BseLI	CCNNNNNNNGG	7 cut(s)	88, 313, 363, 429, 430, 572, 678
BseMII	CTCAG	1 cut(s)	64
BseSI	GKGCMC	2 cut(s)	96, 506
BseXI	GCAGC	4 cut(s)	598, 610, 613, 763
Bsh1236I	CGCG	1 cut(s)	764
Bsh1285I	CGRYCG	1 cut(s)	417
BshFI	GGCC	4 cut(s)	5, 523, 682, 692
BshNI	GGYRCC	2 cut(s)	110, 242
BsiEI	CGRYCG	1 cut(s)	417
BsiHKCI	CYCGRG	2 cut(s)	255, 733
BsiSI	CCGG	6 cut(s)	144, 363, 615, 651, 734, 744
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	7 cut(s)	88, 313, 363, 429, 430, 572, 678
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	4 cut(s)	5, 523, 682, 692
BsoBI	CYCGRG	2 cut(s)	255, 733
Bsp1286I	GDGCHC	2 cut(s)	96, 506
Bsp143I	GATC	5 cut(s)	14, 31, 318, 345, 445
BspACI	CCGC	6 cut(s)	360, 413, 566, 582, 683, 723
BspANI	GGCC	4 cut(s)	5, 523, 682, 692
BspCNI	CTCAG	1 cut(s)	63
BspFNI	CGCG	1 cut(s)	764
BspHI	TCATGA	1 cut(s)	528
BspLI	GGNNCC	4 cut(s)	112, 244, 670, 857
BspT107I	GGYRCC	2 cut(s)	110, 242
BsrFI	RCCGGY	2 cut(s)	143, 614
BssAI	RCCGGY	2 cut(s)	143, 614
BssECI	CCNNGG	7 cut(s)	81, 106, 254, 306, 307, 733, 734
BssMI	GATC	5 cut(s)	14, 31, 318, 345, 445
Bst2UI	CCWGG	6 cut(s)	83, 108, 308, 549, 666, 679
Bst4CI	ACNGT	2 cut(s)	700, 710
BstC8I	GCNNGC	4 cut(s)	39, 521, 694, 721
BstDEI	CTNAG	1 cut(s)	50
BstENI	CCTNNNNNAGG	1 cut(s)	311
BstF5I	GGATG	3 cut(s)	25, 77, 419
BstFNI	CGCG	1 cut(s)	764
BstHHI	GCGC	2 cut(s)	189, 826
BstKTI	GATC	5 cut(s)	17, 34, 321, 348, 448
BstMBI	GATC	5 cut(s)	14, 31, 318, 345, 445
BstMCI	CGRYCG	1 cut(s)	417
BstMWI	GCNNNNNNNGC	4 cut(s)	590, 620, 785, 823
BstNI	CCWGG	6 cut(s)	83, 108, 308, 549, 666, 679
BstSLI	GKGCMC	2 cut(s)	96, 506
BstUI	CGCG	1 cut(s)	764
BstV1I	GCAGC	4 cut(s)	598, 610, 613, 763
BsuRI	GGCC	4 cut(s)	5, 523, 682, 692
BtsCI	GGATG	3 cut(s)	25, 77, 419
BtsIMutI	CAGTG	1 cut(s)	696
Cac8I	GCNNGC	4 cut(s)	39, 521, 694, 721
CaiI	CAGNNNCTG	1 cut(s)	776
CciI	TCATGA	1 cut(s)	528
CfoI	GCGC	2 cut(s)	189, 826
Cfr10I	RCCGGY	2 cut(s)	143, 614
Cfr13I	GGNCC	3 cut(s)	522, 668, 855
Cfr9I	CCCGGG	1 cut(s)	733
CseI	GACGC	1 cut(s)	770
CviAII	CATG	4 cut(s)	233, 529, 791, 849
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	5 cut(s)	16, 33, 320, 347, 447
DpnII	GATC	5 cut(s)	14, 31, 318, 345, 445
EaeI	YGGCCR	1 cut(s)	680
Eco47I	GGWCC	2 cut(s)	668, 855
Eco57I	CTGAAG	1 cut(s)	269
Eco88I	CYCGRG	2 cut(s)	255, 733
EcoNI	CCTNNNNNAGG	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	668
EcoRII	CCWGG	6 cut(s)	81, 106, 306, 547, 664, 677
FaeI	CATG	4 cut(s)	236, 532, 794, 852
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	4 cut(s)	232, 528, 790, 848
FauI	CCCGC	2 cut(s)	589, 716
FbaI	TGATCA	4 cut(s)	31, 318, 345, 445
Fnu4HI	GCNGC	5 cut(s)	612, 624, 627, 683, 777
FokI	GGATG	3 cut(s)	12, 64, 406
Fsp4HI	GCNGC	5 cut(s)	612, 624, 627, 683, 777
FspBI	CTAG	1 cut(s)	599
GlaI	GCGC	2 cut(s)	188, 825
GluI	GCNGC	5 cut(s)	612, 624, 627, 683, 777
GsuI	CTGGAG	1 cut(s)	707
HaeIII	GGCC	4 cut(s)	5, 523, 682, 692
HapII	CCGG	6 cut(s)	144, 363, 615, 651, 734, 744
HgaI	GACGC	1 cut(s)	770
HhaI	GCGC	2 cut(s)	189, 826
Hin1II	CATG	4 cut(s)	236, 532, 794, 852
Hin6I	GCGC	2 cut(s)	187, 824
HinP1I	GCGC	2 cut(s)	187, 824
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	5 cut(s)	229, 280, 453, 739, 832
HpaII	CCGG	6 cut(s)	144, 363, 615, 651, 734, 744
HphI	GGTGA	6 cut(s)	289, 313, 328, 388, 547, 625
Hpy166II	GTNNAC	3 cut(s)	56, 604, 760
Hpy188I	TCNGA	1 cut(s)	485
Hpy188III	TCNNGA	6 cut(s)	12, 18, 29, 139, 208, 529
Hpy8I	GTNNAC	3 cut(s)	56, 604, 760
Hpy99I	CGWCG	2 cut(s)	485, 590
HpyAV	CCTTC	3 cut(s)	307, 535, 793
HpyCH4III	ACNGT	2 cut(s)	700, 710
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	179, 429
HpyF10VI	GCNNNNNNNGC	4 cut(s)	590, 620, 785, 823
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	4 cut(s)	236, 532, 794, 852
HspAI	GCGC	2 cut(s)	187, 824
Ksp22I	TGATCA	4 cut(s)	31, 318, 345, 445
Kzo9I	GATC	5 cut(s)	14, 31, 318, 345, 445
Lsp1109I	GCAGC	4 cut(s)	598, 610, 613, 763
LweI	GCATC	4 cut(s)	428, 499, 561, 580
MaeI	CTAG	1 cut(s)	599
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	5 cut(s)	119, 259, 299, 631, 704
MalI	GATC	5 cut(s)	16, 33, 320, 347, 447
MboI	GATC	5 cut(s)	14, 31, 318, 345, 445
MboII	GAAGA	2 cut(s)	157, 160
MfeI	CAATTG	1 cut(s)	180
MhlI	GDGCHC	2 cut(s)	96, 506
MluCI	AATT	3 cut(s)	66, 180, 211
MlyI	GAGTC	2 cut(s)	289, 462
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	7 cut(s)	122, 264, 381, 388, 569, 682, 748
MseI	TTAA	3 cut(s)	65, 99, 270
MslI	CAYNNNNRTG	2 cut(s)	237, 847
MspA1I	CMGCKG	1 cut(s)	685
MspI	CCGG	6 cut(s)	144, 363, 615, 651, 734, 744
MunI	CAATTG	1 cut(s)	180
MvaI	CCWGG	6 cut(s)	83, 108, 308, 549, 666, 679
MvnI	CGCG	1 cut(s)	764
MwoI	GCNNNNNNNGC	4 cut(s)	590, 620, 785, 823
NciI	CCSGG	4 cut(s)	364, 734, 735, 744
NdeII	GATC	5 cut(s)	14, 31, 318, 345, 445
NlaIII	CATG	4 cut(s)	236, 532, 794, 852
NlaIV	GGNNCC	4 cut(s)	112, 244, 670, 857
NmuCI	GTSAC	1 cut(s)	631
PagI	TCATGA	1 cut(s)	528
PasI	CCCWGGG	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	2 cut(s)	489, 504
PfeI	GAWTC	3 cut(s)	229, 739, 832
PflMI	CCANNNNNTGG	1 cut(s)	678
PkrI	GCNGC	5 cut(s)	613, 625, 628, 684, 778
PleI	GAGTC	2 cut(s)	288, 461
PpsI	GAGTC	2 cut(s)	288, 461
PpuMI	RGGWCCY	1 cut(s)	668
Psp5II	RGGWCCY	1 cut(s)	668
Psp6I	CCWGG	6 cut(s)	81, 106, 306, 547, 664, 677
PspGI	CCWGG	6 cut(s)	81, 106, 306, 547, 664, 677
PspN4I	GGNNCC	4 cut(s)	112, 244, 670, 857
PspPI	GGNCC	3 cut(s)	522, 668, 855
PspPPI	RGGWCCY	1 cut(s)	668
PstNI	CAGNNNCTG	1 cut(s)	776
RseI	CAYNNNNRTG	2 cut(s)	237, 847
SaqAI	TTAA	3 cut(s)	65, 99, 270
SatI	GCNGC	5 cut(s)	612, 624, 627, 683, 777
Sau3AI	GATC	5 cut(s)	14, 31, 318, 345, 445
Sau96I	GGNCC	3 cut(s)	522, 668, 855
SchI	GAGTC	2 cut(s)	289, 462
SduI	GDGCHC	2 cut(s)	96, 506
SfaNI	GCATC	4 cut(s)	428, 499, 561, 580
SinI	GGWCC	2 cut(s)	668, 855
SmaI	CCCGGG	1 cut(s)	735
SmiMI	CAYNNNNRTG	2 cut(s)	237, 847
Sse9I	AATT	3 cut(s)	66, 180, 211
SsiI	CCGC	6 cut(s)	360, 413, 566, 582, 683, 723
SspMI	CTAG	1 cut(s)	599
TaaI	ACNGT	2 cut(s)	700, 710
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	4 cut(s)	153, 341, 498, 588
TasI	AATT	3 cut(s)	66, 180, 211
TauI	GCSGC	1 cut(s)	685
TfiI	GAWTC	3 cut(s)	229, 739, 832
Tru1I	TTAA	3 cut(s)	65, 99, 270
Tru9I	TTAA	3 cut(s)	65, 99, 270
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	1 cut(s)	631
TseI	GCWGC	4 cut(s)	611, 623, 626, 776
Tsp45I	GTSAC	1 cut(s)	631
TspDTI	ATGAA	6 cut(s)	14, 205, 322, 517, 545, 821
TspGWI	ACGGA	1 cut(s)	465
TspMI	CCCGGG	1 cut(s)	733
TspRI	CASTG	1 cut(s)	703
Van91I	CCANNNNNTGG	1 cut(s)	678
VpaK11BI	GGWCC	2 cut(s)	668, 855
XagI	CCTNNNNNAGG	1 cut(s)	311
XapI	RAATTY	1 cut(s)	211
XmaI	CCCGGG	1 cut(s)	733
XspI	CTAG	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.