RLG00000026044

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005922
Physical Location & Seq
Reverse (-)
218064 .. 219642
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026044

Sequence Viewer

Length: 1227 bp
ATGCATCAAGGAATTCGACAAAAAGATTTATACCCGCCTAATAAATCAATACTTGTAAAATCAAAGAGGGAAAATAAAATGGTTTTTCGTGTTGCAGTAGCAACTCAGGCTCTCTTGCTAATCCTCCTCCTCACTACGCCTCACTTCGTATTGGCAGGCAAGAAAGGAGGAGGCGGAGGCAAGAAAGGAGGAGGCGGTAAGGGTGGGGCTAAAAAACCATCGACACCTTATAGAGCACCTAAGAAAGGTGGAGGCGGGGCCAAGAATAAACCATCGAAACCAGCAACACCTTATAGACCACCTGTAGTCGCCGCGCCCAGAAAACCAGTGGCAGCTTATACACCTCTGCCGGAAGCTGTGGCCACCATTGAAGTGCCTAGACCAGGGACACTATCGAGAGGTCCCGCCTGTAAGGGCAACGGTGAGGGTATCATATACAAGGGAGGCCCTCTCCTGACCGGGGAGCTCAACCTTTCCATCATATTTTACGGCCAATGGCAGAGCCAACACAAGGATCTGATCAGGAGTTTCCTCAGTTCGTTGGCGGTGCCGGGCTCGACGGCGAACCAGTGGTGGGCCATTGTGGAAAGTTACCAGACTGTGGCCAATATGCCCAACCAAGGCGTCCATATCAAAGTGGGCACTCAGTCGAGCGATGACAAGGCCTCCTTGGGCAAAGTTTTGACCAAAGACTTTATCAAGCAGCTTGTGCAGAGGGCCAAGAGCGGCAACCCCAACACTCTCGCTGTCATCTTCGCCCATAAAGATGTCGCAGTTGCAGACCTGTGCAGGGGCAAATGCTACGAGCATGGAGCGTTTGATAACATGCCCTATCTCATTGTCGGAAACCCCGAAGTTGAGTGCCCTGGTTCTTGTGCCATTCCCTTCGCAAAGGCCAGCTACGGTCCTGCAGGCGACACCGTCAAACCACCAAACGGAGACCTTGGCGTTGATGCCACCATCATCAACTTTGCCTCCGGCTTGGCTTCCGTAGTCACTAACCCATTCAACGGCGGATTTTCCAAACCAGGACCCAAAACCTGGGCGATTGAGGCTGGCAACGCCTGCGAGGATATGTTCGGAAGCGGAGCAGGTCCCGGCCAACCCGGAAAGATGACAATCGACGCAGCCGGTTGTGGCTACAATGCCGTTGGAGATGGGGGTGCAAGATTTTTGCTTCCAGCAATTTGGGATCCAAAGTCGTCCACATGCTGGACCCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

409

Amino Acids

42.62

Weight (kDa)

9.62

Isoelectric Point (pI)

33.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 146 - 407 1.2e-82 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1082
AccB1I GGYRCC 1 cut(s) 547
AccB7I CCANNNNNTGG 3 cut(s) 601, 1041, 1212
AccBSI CCGCTC 1 cut(s) 726
AccII CGCG 1 cut(s) 314
AclWI GGATC 3 cut(s) 522, 1187, 1200
AcoI YGGCCR 4 cut(s) 360, 490, 603, 1099
AcsI RAATTY 1 cut(s) 12
AcyI GRCGYC 1 cut(s) 624
AgsI TTSAA 2 cut(s) 371, 1009
AjnI CCWGG 4 cut(s) 382, 865, 1027, 1040
AluBI AGCT 5 cut(s) 335, 356, 466, 706, 900
AluI AGCT 5 cut(s) 335, 356, 466, 706, 900
Alw21I GWGCWC 2 cut(s) 238, 468
Alw26I GTCTC 1 cut(s) 933
AlwI GGATC 3 cut(s) 522, 1187, 1200
ApeKI GCWGC 3 cut(s) 332, 703, 1127
ApoI RAATTY 1 cut(s) 12
AspLEI GCGC 1 cut(s) 316
AspS9I GGNCC 9 cut(s) 258, 401, 446, 576, 717, 905, 1031, 1094, 1215
AsuC2I CCSGG 4 cut(s) 460, 552, 1098, 1107
AsuHPI GGTGA 1 cut(s) 434
AvaII GGWCC 5 cut(s) 401, 905, 1031, 1094, 1215
BaeGI GKGCMC 2 cut(s) 644, 866
BalI TGGCCA 2 cut(s) 362, 605
BamHI GGATCC 1 cut(s) 1192
BanI GGYRCC 1 cut(s) 547
BanII GRGCYC 2 cut(s) 468, 557
Bbv12I GWGCWC 2 cut(s) 238, 468
BbvI GCAGC 3 cut(s) 344, 715, 1139
BccI CCATC 5 cut(s) 226, 280, 485, 968, 1151
BceAI ACGGC 4 cut(s) 505, 576, 1027, 1133
BciT130I CCWGG 4 cut(s) 384, 867, 1029, 1042
BclI TGATCA 1 cut(s) 519
BcnI CCSGG 4 cut(s) 460, 552, 1098, 1107
BcoDI GTCTC 1 cut(s) 933
BfaI CTAG 1 cut(s) 378
BfmI CTRYAG 2 cut(s) 303, 909
BfuAI ACCTGC 1 cut(s) 1082
BisI GCNGC 5 cut(s) 312, 333, 704, 727, 1128
BlsI GCNGC 5 cut(s) 313, 334, 705, 728, 1129
Bme1390I CCNGG 8 cut(s) 384, 460, 552, 867, 1029, 1042, 1098, 1107
Bme18I GGWCC 5 cut(s) 401, 905, 1031, 1094, 1215
BmgT120I GGNCC 9 cut(s) 258, 401, 446, 576, 717, 905, 1031, 1094, 1215
BmiI GGNNCC 7 cut(s) 259, 403, 549, 1033, 1096, 1194, 1217
BmrFI CCNGG 8 cut(s) 384, 460, 552, 867, 1029, 1042, 1098, 1107
BmsI GCATC 2 cut(s) 13, 943
BplI GAGNNNNNCTC 2 cut(s) 435, 467
BpuMI CCSGG 4 cut(s) 460, 552, 1098, 1107
BsaBI GATNNNNATC 1 cut(s) 1118
BsaHI GRCGYC 1 cut(s) 624
BsaI GGTCTC 1 cut(s) 933
BsaJI CCNNGG 7 cut(s) 383, 459, 619, 669, 865, 943, 1041
BsaXI ACNNNNNCTCC 4 cut(s) 650, 680, 959, 989
Bse118I RCCGGY 1 cut(s) 1130
Bse1I ACTGG 2 cut(s) 326, 568
Bse8I GATNNNNATC 1 cut(s) 1118
BseBI CCWGG 4 cut(s) 384, 867, 1029, 1042
BseDI CCNNGG 7 cut(s) 383, 459, 619, 669, 865, 943, 1041
BseJI GATNNNNATC 1 cut(s) 1118
BseMII CTCAG 3 cut(s) 119, 547, 659
BseNI ACTGG 2 cut(s) 326, 568
BseRI GAGGAG 4 cut(s) 116, 119, 183, 204
BseSI GKGCMC 2 cut(s) 644, 866
BseXI GCAGC 3 cut(s) 344, 715, 1139
BsgI GTGCAG 2 cut(s) 731, 808
Bsh1236I CGCG 1 cut(s) 314
BshNI GGYRCC 1 cut(s) 547
BsiHKAI GWGCWC 2 cut(s) 238, 468
BsiSI CCGG 7 cut(s) 350, 459, 551, 978, 1098, 1107, 1131
BslFI GGGAC 3 cut(s) 387, 400, 1080
BsmAI GTCTC 1 cut(s) 933
BsmFI GGGAC 3 cut(s) 387, 400, 1080
Bso31I GGTCTC 1 cut(s) 933
Bsp1286I GDGCHC 5 cut(s) 238, 468, 557, 644, 866
Bsp143I GATC 3 cut(s) 514, 519, 1192
BspCNI CTCAG 3 cut(s) 118, 546, 658
BspFNI CGCG 1 cut(s) 314
BspLI GGNNCC 7 cut(s) 259, 403, 549, 1033, 1096, 1194, 1217
BspMAI CTGCAG 1 cut(s) 913
BspMI ACCTGC 1 cut(s) 1082
BspPI GGATC 3 cut(s) 522, 1187, 1200
BspT107I GGYRCC 1 cut(s) 547
BspTNI GGTCTC 1 cut(s) 933
BsrBI CCGCTC 1 cut(s) 726
BsrFI RCCGGY 1 cut(s) 1130
BsrI ACTGG 2 cut(s) 326, 568
BssAI RCCGGY 1 cut(s) 1130
BssECI CCNNGG 7 cut(s) 383, 459, 619, 669, 865, 943, 1041
BssMI GATC 3 cut(s) 514, 519, 1192
BssNI GRCGYC 1 cut(s) 624
BssT1I CCWWGG 3 cut(s) 619, 669, 943
Bst2UI CCWGG 4 cut(s) 384, 867, 1029, 1042
Bst4CI ACNGT 4 cut(s) 422, 601, 905, 922
BstACI GRCGYC 1 cut(s) 624
BstAPI GCANNNNNTGC 2 cut(s) 709, 1065
BstC8I GCNNGC 5 cut(s) 157, 898, 913, 1057, 1066
BstDEI CTNAG 4 cut(s) 105, 240, 533, 645
BstENI CCTNNNNNAGG 2 cut(s) 243, 381
BstFNI CGCG 1 cut(s) 314
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 3 cut(s) 517, 522, 1195
BstMAI GTCTC 1 cut(s) 933
BstMBI GATC 3 cut(s) 514, 519, 1192
BstMWI GCNNNNNNNGC 5 cut(s) 107, 709, 1052, 1061, 1065
BstNI CCWGG 4 cut(s) 384, 867, 1029, 1042
BstNSI RCATGY 2 cut(s) 829, 1212
BstSCI CCNGG 8 cut(s) 382, 458, 550, 865, 1027, 1040, 1096, 1105
BstSFI CTRYAG 2 cut(s) 303, 909
BstSLI GKGCMC 2 cut(s) 644, 866
BstUI CGCG 1 cut(s) 314
BstV1I GCAGC 3 cut(s) 344, 715, 1139
BstX2I RGATCY 2 cut(s) 514, 1192
BstXI CCANNNNNNTGG 1 cut(s) 1188
BstYI RGATCY 2 cut(s) 514, 1192
BtgZI GCGATG 1 cut(s) 669
BtsIMutI CAGTG 2 cut(s) 333, 575
BveI ACCTGC 1 cut(s) 1082
Cac8I GCNNGC 5 cut(s) 157, 898, 913, 1057, 1066
CfoI GCGC 1 cut(s) 316
Cfr10I RCCGGY 1 cut(s) 1130
Cfr13I GGNCC 9 cut(s) 258, 401, 446, 576, 717, 905, 1031, 1094, 1215
CseI GACGC 2 cut(s) 613, 1133
CviAII CATG 3 cut(s) 809, 826, 1209
DdeI CTNAG 4 cut(s) 105, 240, 533, 645
DpnI GATC 3 cut(s) 516, 521, 1194
DpnII GATC 3 cut(s) 514, 519, 1192
EaeI YGGCCR 4 cut(s) 360, 490, 603, 1099
EciI GGCGGA 2 cut(s) 189, 1029
Ecl136II GAGCTC 1 cut(s) 466
Eco130I CCWWGG 3 cut(s) 619, 669, 943
Eco147I AGGCCT 1 cut(s) 665
Eco24I GRGCYC 2 cut(s) 468, 557
Eco31I GGTCTC 1 cut(s) 933
Eco47I GGWCC 5 cut(s) 401, 905, 1031, 1094, 1215
Eco53kI GAGCTC 1 cut(s) 466
EcoICRI GAGCTC 1 cut(s) 466
EcoNI CCTNNNNNAGG 2 cut(s) 243, 381
EcoO109I RGGNCCY 4 cut(s) 401, 446, 1031, 1094
EcoRI GAATTC 1 cut(s) 12
EcoRII CCWGG 4 cut(s) 382, 865, 1027, 1040
EcoT14I CCWWGG 3 cut(s) 619, 669, 943
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 468, 557
ErhI CCWWGG 3 cut(s) 619, 669, 943
FaeI CATG 3 cut(s) 812, 829, 1212
FalI AAGNNNNNCTT 2 cut(s) 653, 685
FaqI GGGAC 3 cut(s) 387, 400, 1080
FatI CATG 3 cut(s) 808, 825, 1208
FauI CCCGC 3 cut(s) 42, 248, 412
FbaI TGATCA 1 cut(s) 519
Fnu4HI GCNGC 5 cut(s) 312, 333, 704, 727, 1128
FriOI GRGCYC 2 cut(s) 468, 557
Fsp4HI GCNGC 5 cut(s) 312, 333, 704, 727, 1128
FspBI CTAG 1 cut(s) 378
GlaI GCGC 1 cut(s) 315
GluI GCNGC 5 cut(s) 312, 333, 704, 727, 1128
HapII CCGG 7 cut(s) 350, 459, 551, 978, 1098, 1107, 1131
HgaI GACGC 2 cut(s) 613, 1133
HhaI GCGC 1 cut(s) 316
Hin1I GRCGYC 1 cut(s) 624
Hin1II CATG 3 cut(s) 812, 829, 1212
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HpaII CCGG 7 cut(s) 350, 459, 551, 978, 1098, 1107, 1131
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 1 cut(s) 1206
Hpy188I TCNGA 3 cut(s) 519, 845, 1082
Hpy188III TCNNGA 3 cut(s) 396, 454, 523
Hpy8I GTNNAC 1 cut(s) 1206
Hpy99I CGWCG 2 cut(s) 562, 1127
HpyAV CCTTC 1 cut(s) 895
HpyCH4III ACNGT 4 cut(s) 422, 601, 905, 922
HpyCH4V TGCA 7 cut(s) 4, 95, 712, 779, 789, 911, 1166
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 709, 1052, 1061, 1065
HpyF3I CTNAG 4 cut(s) 105, 240, 533, 645
Hsp92I GRCGYC 1 cut(s) 624
Hsp92II CATG 3 cut(s) 812, 829, 1212
HspAI GCGC 1 cut(s) 314
Ksp22I TGATCA 1 cut(s) 519
Kzo9I GATC 3 cut(s) 514, 519, 1192
LmnI GCTCC 3 cut(s) 463, 812, 1088
Lsp1109I GCAGC 3 cut(s) 344, 715, 1139
LweI GCATC 2 cut(s) 13, 943
MaeI CTAG 1 cut(s) 378
MaeIII GTNAC 2 cut(s) 590, 994
MalI GATC 3 cut(s) 516, 521, 1194
MbiI CCGCTC 1 cut(s) 726
MboI GATC 3 cut(s) 514, 519, 1192
MboII GAAGA 1 cut(s) 745
MflI RGATCY 2 cut(s) 514, 1192
MhlI GDGCHC 5 cut(s) 238, 468, 557, 644, 866
MlsI TGGCCA 2 cut(s) 362, 605
MluCI AATT 2 cut(s) 12, 1185
MluNI TGGCCA 2 cut(s) 362, 605
MmeI TCCRAC 2 cut(s) 823, 1132
Mox20I TGGCCA 2 cut(s) 362, 605
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 2 cut(s) 362, 605
MslI CAYNNNNRTG 2 cut(s) 371, 765
Msp20I TGGCCA 2 cut(s) 362, 605
MspI CCGG 7 cut(s) 350, 459, 551, 978, 1098, 1107, 1131
MspR9I CCNGG 8 cut(s) 384, 460, 552, 867, 1029, 1042, 1098, 1107
MvaI CCWGG 4 cut(s) 384, 867, 1029, 1042
MvnI CGCG 1 cut(s) 314
MwoI GCNNNNNNNGC 5 cut(s) 107, 709, 1052, 1061, 1065
NciI CCSGG 4 cut(s) 460, 552, 1098, 1107
NdeII GATC 3 cut(s) 514, 519, 1192
NlaIII CATG 3 cut(s) 812, 829, 1212
NlaIV GGNNCC 7 cut(s) 259, 403, 549, 1033, 1096, 1194, 1217
NmuCI GTSAC 1 cut(s) 994
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 829, 1212
PceI AGGCCT 1 cut(s) 665
PcsI WCGNNNNNNNCGW 1 cut(s) 849
PflFI GACNNNGTC 1 cut(s) 920
PflMI CCANNNNNTGG 3 cut(s) 601, 1041, 1212
PkrI GCNGC 5 cut(s) 313, 334, 705, 728, 1129
PpuMI RGGWCCY 3 cut(s) 401, 1031, 1094
Psp124BI GAGCTC 1 cut(s) 468
Psp5II RGGWCCY 3 cut(s) 401, 1031, 1094
Psp6I CCWGG 4 cut(s) 382, 865, 1027, 1040
PspGI CCWGG 4 cut(s) 382, 865, 1027, 1040
PspN4I GGNNCC 7 cut(s) 259, 403, 549, 1033, 1096, 1194, 1217
PspPI GGNCC 9 cut(s) 258, 401, 446, 576, 717, 905, 1031, 1094, 1215
PspPPI RGGWCCY 3 cut(s) 401, 1031, 1094
PstI CTGCAG 1 cut(s) 913
PsuI RGATCY 2 cut(s) 514, 1192
PsyI GACNNNGTC 1 cut(s) 920
RseI CAYNNNNRTG 2 cut(s) 371, 765
SacI GAGCTC 1 cut(s) 468
SatI GCNGC 5 cut(s) 312, 333, 704, 727, 1128
Sau3AI GATC 3 cut(s) 514, 519, 1192
Sau96I GGNCC 9 cut(s) 258, 401, 446, 576, 717, 905, 1031, 1094, 1215
SbfI CCTGCAGG 1 cut(s) 913
ScrFI CCNGG 8 cut(s) 384, 460, 552, 867, 1029, 1042, 1098, 1107
SdaI CCTGCAGG 1 cut(s) 913
SduI GDGCHC 5 cut(s) 238, 468, 557, 644, 866
SfaNI GCATC 2 cut(s) 13, 943
SfcI CTRYAG 2 cut(s) 303, 909
SinI GGWCC 5 cut(s) 401, 905, 1031, 1094, 1215
SmiMI CAYNNNNRTG 2 cut(s) 371, 765
Sse8387I CCTGCAGG 1 cut(s) 913
Sse9I AATT 2 cut(s) 12, 1185
SseBI AGGCCT 1 cut(s) 665
SspMI CTAG 1 cut(s) 378
SstI GAGCTC 1 cut(s) 468
StuI AGGCCT 1 cut(s) 665
StyD4I CCNGG 8 cut(s) 382, 458, 550, 865, 1027, 1040, 1096, 1105
StyI CCWWGG 3 cut(s) 619, 669, 943
TaaI ACNGT 4 cut(s) 422, 601, 905, 922
TaqI TCGA 7 cut(s) 16, 221, 275, 395, 557, 650, 1122
TasI AATT 2 cut(s) 12, 1185
TauI GCSGC 2 cut(s) 314, 729
TscAI CASTG 2 cut(s) 333, 575
TseFI GTSAC 1 cut(s) 994
TseI GCWGC 3 cut(s) 332, 703, 1127
Tsp45I GTSAC 1 cut(s) 994
TspGWI ACGGA 2 cut(s) 951, 979
TspRI CASTG 2 cut(s) 333, 575
Tth111I GACNNNGTC 1 cut(s) 920
Van91I CCANNNNNTGG 3 cut(s) 601, 1041, 1212
VpaK11BI GGWCC 5 cut(s) 401, 905, 1031, 1094, 1215
XagI CCTNNNNNAGG 2 cut(s) 243, 381
XapI RAATTY 1 cut(s) 12
XceI RCATGY 2 cut(s) 829, 1212
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XspI CTAG 1 cut(s) 378
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.