Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0013724

Physical Location & Seq

Genomic Coordinates Reverse (-)

3941750 .. 3950345

Gene Structure 8596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1023700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 144 bp

ATGTTATGTGCTTGGGAGTATTGGGTTTTTCGAGTTTGTGACTTTTCATTGAAGCCTGCGAAGACCTGTGTGTTTAAGGAGATCCGGTTTTTCGGGTTTCTGACGTTTCTTTGCAGCCTGCGAAGGCCTCTGTATTTAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0017076 GO:0019001 GO:0030139 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

48

Amino Acids

5.73

Weight (kDa)

9.16

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013724)

Species	Orthologous Gene IDs
malus_domestica	MD00G1023700.v1.1 MD02G1173800.v1.1 MD02G1253200.v1.1 MD02G1254000.v1.1 MD03G1270800.v1.1 MD07G1164600.v1.1 MD07G1201300.v1.1 MD09G1237100.v1.1 MD10G1011600.v1.1 MD10G1322600.v1.1 MD12G1253700.v1.1 MD16G1114600.v1.1
pyrus_communis	pycom01g20530 pycom05g23680 pycom05g24210 pycom05g24250 pycom10g04750 pycom17g24110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	52
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
AlwI	GGATC	1 cut(s)	76
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	126
BisI	GCNGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
BseXI	GCAGC	1 cut(s)	126
BshFI	GGCC	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	85
BsnI	GGCC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	81
BspANI	GGCC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	76
BssMI	GATC	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	57, 119
BstKTI	GATC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	126
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	57, 119
CviJI	RGCY	4 cut(s)	55, 117, 127, 141
CviKI_1	RGCY	4 cut(s)	55, 117, 127, 141
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
Eco147I	AGGCCT	1 cut(s)	127
FaiI	YATR	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	115
Fsp4HI	GCNGC	1 cut(s)	115
GluI	GCNGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	85
HpaII	CCGG	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	102
HpyAV	CCTTC	1 cut(s)	117
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	104
Kzo9I	GATC	1 cut(s)	81
LpnPI	CCDG	4 cut(s)	69, 79, 98, 131
Lsp1109I	GCAGC	1 cut(s)	126
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	1 cut(s)	73
MflI	RGATCY	1 cut(s)	81
MnlI	CCTC	1 cut(s)	138
MseI	TTAA	2 cut(s)	75, 137
MspI	CCGG	1 cut(s)	85
NdeII	GATC	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	38
PceI	AGGCCT	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	75, 137
SatI	GCNGC	1 cut(s)	115
Sau3AI	GATC	1 cut(s)	81
SetI	ASST	3 cut(s)	68, 107, 143
SgeI	CNNG	7 cut(s)	24, 44, 68, 78, 97, 106, 130
SseBI	AGGCCT	1 cut(s)	127
StuI	AGGCCT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	1 cut(s)	31
Tru1I	TTAA	2 cut(s)	75, 137
Tru9I	TTAA	2 cut(s)	75, 137
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	114
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.