MD07G1201300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0013724
Physical Location & Seq
Reverse (-)
27950320 .. 27953073
2754 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1201300.v1.1.491

Sequence Viewer

Length: 240 bp
ATGGAAAAGCAGGGCCCTTCCATTTGCTTCCACAGATTTATCGATCTCTCTCTCAAGCTCCAAATCGCTAGCCTCCACAAGAAGGTAGTACTCGGAGAAGTTTGTCAAGGGCCGATGGGACAAGGAGCATTGCATTTCATAATGGCAGAAATACAAGACCTCCCTCTCTGTGCGTTGCAGAAGATGGGGGCTTTGGATGTAAAGAAGTTGGTGACAGACACCAGGGGTGGCTTCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.64

Weight (kDa)

8.55

Isoelectric Point (pI)

26.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 82
AjnI CCWGG 1 cut(s) 221
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
AoxI GGCC 2 cut(s) 13, 110
ApaI GGGCCC 1 cut(s) 17
AspS9I GGNCC 3 cut(s) 13, 14, 110
AsuHPI GGTGA 1 cut(s) 223
AsuNHI GCTAGC 1 cut(s) 68
BaeGI GKGCMC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 17
BccI CCATC 2 cut(s) 109, 178
BciT130I CCWGG 1 cut(s) 223
BfaI CTAG 1 cut(s) 69
BmcAI AGTACT 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 223
BmgT120I GGNCC 3 cut(s) 13, 14, 110
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 223
BmtI GCTAGC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 38
Bsa29I ATCGAT 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse3DI GCAATG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 223
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMI GCAATG 1 cut(s) 128
BseSI GKGCMC 1 cut(s) 17
BshFI GGCC 2 cut(s) 15, 112
BshVI ATCGAT 1 cut(s) 42
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 132
BsnI GGCC 2 cut(s) 15, 112
Bsp120I GGGCCC 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 1 cut(s) 43
BspANI GGCC 2 cut(s) 15, 112
BspDI ATCGAT 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 15
BspOI GCTAGC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 43
Bst2UI CCWGG 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 70
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 221
BstSLI GKGCMC 1 cut(s) 17
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 2 cut(s) 15, 112
BsuTUI ATCGAT 1 cut(s) 42
BtsCI GGATG 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 70
Cfr13I GGNCC 3 cut(s) 13, 14, 110
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 1 cut(s) 89
CviJI RGCY 6 cut(s) 15, 58, 72, 112, 191, 231
CviKI_1 RGCY 6 cut(s) 15, 58, 72, 112, 191, 231
CviQI GTAC 1 cut(s) 89
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 17
EcoO109I RGGNCCY 2 cut(s) 13, 14
EcoRII CCWGG 1 cut(s) 221
EcoT38I GRGCYC 1 cut(s) 17
FaiI YATR 2 cut(s) 140, 238
FaqI GGGAC 1 cut(s) 132
FokI GGATG 1 cut(s) 209
FriOI GRGCYC 1 cut(s) 17
FspBI CTAG 1 cut(s) 69
HaeIII GGCC 2 cut(s) 15, 112
HphI GGTGA 1 cut(s) 223
Hpy188I TCNGA 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 27, 76
HpyCH4V TGCA 2 cut(s) 133, 178
Kzo9I GATC 1 cut(s) 43
LmnI GCTCC 2 cut(s) 63, 125
LpnPI CCDG 2 cut(s) 208, 235
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 211
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 17
MnlI CCTC 3 cut(s) 83, 170, 174
MspR9I CCNGG 1 cut(s) 223
MvaI CCWGG 1 cut(s) 223
NdeII GATC 1 cut(s) 43
NheI GCTAGC 1 cut(s) 68
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 221
PspGI CCWGG 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 15
PspOMI GGGCCC 1 cut(s) 13
PspPI GGNCC 3 cut(s) 13, 14, 110
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
Sau3AI GATC 1 cut(s) 43
Sau96I GGNCC 3 cut(s) 13, 14, 110
ScaI AGTACT 1 cut(s) 90
ScrFI CCNGG 1 cut(s) 223
SduI GDGCHC 1 cut(s) 17
SetI ASST 3 cut(s) 60, 87, 162
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 221
TaqI TCGA 1 cut(s) 42
TatI WGTACW 1 cut(s) 88
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 127
XspI CTAG 1 cut(s) 69
ZrmI AGTACT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.