pycom17g24110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013724
Physical Location & Seq
Reverse (-)
22398233 .. 22399722
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g24110.3

Sequence Viewer

Length: 651 bp
ATGTTTGCCTTCCACACGATCCCTGTCGGTGGAACCCTACAAAGAAGTTTCCACCAAGCTTCCTCCATCTATTTAGGTATCCGGCCCATATCTTTGTGGCCACGTCCGCGACTCCGTACACATCTTCATCACGTCGTTCTCTATATGTACCTGCATGATTTTGTACAAGATCTCAGCTGGGACATCGTGCTCGAACAGAAATTTCCACGAACTTTCCTCCCAATCAGGGATCACACTCTTAGGGCAGGTTTGGTTGAAGTGAAGGGGTGGGCACTGTGGATGACCAGTGGGCGGACTGTTTTGCCCCTCCGTTTTATATCGATTTCCCTTGCTGCTCCCCACGTCCTCATCGTGCACCTTTTCGTTGGATTTTCTTCCCCCTATAGTGTTATACACATGTTGCTCATCGTGGAGGGGAAGAAACATGGAAAAGCTGGCTCTTCCATTTGCTTCCACAGATTTCTCGAGCTCTTTCTCAAGCTCCGAATCGTTGGCCTCCGCAAGAAGGAAATCGCCAATTCGAAAGCTTGGGTTTCCTGCTTTCTCACTAGAGATCTTTGCCATCGCTGCTCCACCAAACTTGATTCCGCTCTTTCAAACAGGTGGTGTTCTGATTTTTCATTCCTTCTCATCACTTCTACAAGAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.85

Weight (kDa)

10.25

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 159, 236
AccBSI CCGCTC 1 cut(s) 590
AccII CGCG 1 cut(s) 109
AciI CCGC 4 cut(s) 107, 292, 499, 588
AclWI GGATC 2 cut(s) 13, 237
AcoI YGGCCR 1 cut(s) 98
AcsI RAATTY 1 cut(s) 200
AfaI GTAC 3 cut(s) 118, 149, 165
AfiI CCNNNNNNNGG 4 cut(s) 29, 226, 291, 505
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 2 cut(s) 257, 597
AjiI CACGTC 3 cut(s) 104, 133, 343
AluBI AGCT 6 cut(s) 59, 177, 434, 469, 481, 527
AluI AGCT 6 cut(s) 59, 177, 434, 469, 481, 527
Alw21I GWGCWC 3 cut(s) 192, 357, 471
Alw44I GTGCAC 1 cut(s) 353
AlwI GGATC 2 cut(s) 13, 237
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 3 cut(s) 83, 98, 493
ApaLI GTGCAC 1 cut(s) 353
ApeKI GCWGC 2 cut(s) 332, 567
ApoI RAATTY 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 84
AsuII TTCGAA 1 cut(s) 521
AvaI CYCGRG 1 cut(s) 464
BaeGI GKGCMC 2 cut(s) 274, 357
BalI TGGCCA 1 cut(s) 100
BanII GRGCYC 1 cut(s) 471
Bbv12I GWGCWC 3 cut(s) 192, 357, 471
BbvI GCAGC 2 cut(s) 319, 554
BccI CCATC 2 cut(s) 74, 570
BciVI GTATCC 1 cut(s) 89
BfaI CTAG 1 cut(s) 549
BfmI CTRYAG 1 cut(s) 382
BfuAI ACCTGC 2 cut(s) 159, 236
BfuI GTATCC 1 cut(s) 89
BglII AGATCT 2 cut(s) 169, 553
BisI GCNGC 2 cut(s) 333, 568
BlsI GCNGC 2 cut(s) 334, 569
BmeT110I CYCGRG 1 cut(s) 464
BmgBI CACGTC 3 cut(s) 104, 133, 343
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 34
Bpu14I TTCGAA 1 cut(s) 521
BpuEI CTTGAG 1 cut(s) 461
Bsa29I ATCGAT 1 cut(s) 320
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 226, 291, 505
Bse1I ACTGG 1 cut(s) 285
BseCI ATCGAT 1 cut(s) 320
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 4 cut(s) 29, 226, 291, 505
BseMII CTCAG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 285
BseSI GKGCMC 2 cut(s) 274, 357
BseXI GCAGC 2 cut(s) 319, 554
BseYI CCCAGC 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 109
BshFI GGCC 3 cut(s) 85, 100, 495
BshVI ATCGAT 1 cut(s) 320
BsiHKAI GWGCWC 3 cut(s) 192, 357, 471
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 1 cut(s) 82
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 4 cut(s) 29, 226, 291, 505
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 3 cut(s) 85, 100, 495
BsoBI CYCGRG 1 cut(s) 464
Bsp119I TTCGAA 1 cut(s) 521
Bsp1286I GDGCHC 4 cut(s) 192, 274, 357, 471
Bsp1407I TGTACA 1 cut(s) 163
Bsp143I GATC 4 cut(s) 18, 169, 229, 553
BspACI CCGC 4 cut(s) 107, 292, 499, 588
BspANI GGCC 3 cut(s) 85, 100, 495
BspCNI CTCAG 1 cut(s) 186
BspDI ATCGAT 1 cut(s) 320
BspFNI CGCG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 34
BspMI ACCTGC 2 cut(s) 159, 236
BspPI GGATC 2 cut(s) 13, 237
BspQI GCTCTTC 1 cut(s) 445
BspT104I TTCGAA 1 cut(s) 521
BsrBI CCGCTC 1 cut(s) 590
BsrGI TGTACA 1 cut(s) 163
BsrI ACTGG 1 cut(s) 285
BssMI GATC 4 cut(s) 18, 169, 229, 553
Bst4CI ACNGT 2 cut(s) 276, 298
Bst6I CTCTTC 1 cut(s) 445
BstAUI TGTACA 1 cut(s) 163
BstBI TTCGAA 1 cut(s) 521
BstC8I GCNNGC 1 cut(s) 436
BstDEI CTNAG 2 cut(s) 173, 239
BstF5I GGATG 1 cut(s) 285
BstFNI CGCG 1 cut(s) 109
BstKTI GATC 4 cut(s) 21, 172, 232, 556
BstMBI GATC 4 cut(s) 18, 169, 229, 553
BstMWI GCNNNNNNNGC 2 cut(s) 106, 567
BstNSI RCATGY 1 cut(s) 400
BstSFI CTRYAG 1 cut(s) 382
BstSLI GKGCMC 2 cut(s) 274, 357
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 2 cut(s) 319, 554
BstX2I RGATCY 2 cut(s) 169, 553
BstYI RGATCY 2 cut(s) 169, 553
Bsu15I ATCGAT 1 cut(s) 320
BsuI GTATCC 1 cut(s) 89
BsuRI GGCC 3 cut(s) 85, 100, 495
BsuTUI ATCGAT 1 cut(s) 320
BtgZI GCGATG 1 cut(s) 548
BtrI CACGTC 3 cut(s) 104, 133, 343
BtsCI GGATG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 272, 292
BveI ACCTGC 2 cut(s) 159, 236
Cac8I GCNNGC 1 cut(s) 436
Cfr13I GGNCC 1 cut(s) 84
ClaI ATCGAT 1 cut(s) 320
Csp6I GTAC 3 cut(s) 117, 148, 164
CspCI CAANNNNNGTGG 2 cut(s) 562, 597
CviAII CATG 3 cut(s) 155, 397, 425
CviQI GTAC 3 cut(s) 117, 148, 164
DdeI CTNAG 2 cut(s) 173, 239
DpnI GATC 4 cut(s) 20, 171, 231, 555
DpnII GATC 4 cut(s) 18, 169, 229, 553
EaeI YGGCCR 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 445
EarI CTCTTC 1 cut(s) 445
EciI GGCGGA 1 cut(s) 307
Ecl136II GAGCTC 1 cut(s) 469
Eco24I GRGCYC 1 cut(s) 471
Eco53kI GAGCTC 1 cut(s) 469
Eco88I CYCGRG 1 cut(s) 464
EcoICRI GAGCTC 1 cut(s) 469
EcoT38I GRGCYC 1 cut(s) 471
FaeI CATG 3 cut(s) 158, 400, 428
FaiI YATR 9 cut(s) 89, 144, 146, 156, 317, 384, 392, 398, 426
FaqI GGGAC 1 cut(s) 194
FatI CATG 3 cut(s) 154, 396, 424
Fnu4HI GCNGC 2 cut(s) 333, 568
FokI GGATG 1 cut(s) 292
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 2 cut(s) 333, 568
FspBI CTAG 1 cut(s) 549
GluI GCNGC 2 cut(s) 333, 568
GsaI CCCAGC 1 cut(s) 181
HaeIII GGCC 3 cut(s) 85, 100, 495
HapII CCGG 1 cut(s) 82
Hin1II CATG 3 cut(s) 158, 400, 428
HindIII AAGCTT 2 cut(s) 57, 525
HinfI GANTC 3 cut(s) 111, 486, 584
HpaII CCGG 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 119, 355
Hpy188I TCNGA 2 cut(s) 485, 613
Hpy188III TCNNGA 1 cut(s) 464
Hpy8I GTNNAC 2 cut(s) 119, 355
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 4 cut(s) 19, 256, 499, 635
HpyCH4III ACNGT 2 cut(s) 276, 298
HpyCH4IV ACGT 3 cut(s) 103, 132, 342
HpyCH4V TGCA 2 cut(s) 154, 355
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 567
HpyF3I CTNAG 2 cut(s) 173, 239
HpySE526I ACGT 3 cut(s) 103, 132, 342
Hsp92II CATG 3 cut(s) 158, 400, 428
Kzo9I GATC 4 cut(s) 18, 169, 229, 553
LguI GCTCTTC 1 cut(s) 445
LmnI GCTCC 3 cut(s) 340, 486, 575
Lsp1109I GCAGC 2 cut(s) 319, 554
MaeI CTAG 1 cut(s) 549
MaeII ACGT 3 cut(s) 103, 132, 342
MalI GATC 4 cut(s) 20, 171, 231, 555
MbiI CCGCTC 1 cut(s) 590
MboI GATC 4 cut(s) 18, 169, 229, 553
MboII GAAGA 4 cut(s) 116, 366, 430, 432
MflI RGATCY 2 cut(s) 169, 553
MhlI GDGCHC 4 cut(s) 192, 274, 357, 471
MlsI TGGCCA 1 cut(s) 100
MluCI AATT 2 cut(s) 200, 517
MluNI TGGCCA 1 cut(s) 100
MlyI GAGTC 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 7 cut(s) 73, 227, 317, 356, 406, 506, 638
Mox20I TGGCCA 1 cut(s) 100
MscI TGGCCA 1 cut(s) 100
Msp20I TGGCCA 1 cut(s) 100
MspA1I CMGCKG 1 cut(s) 177
MspI CCGG 1 cut(s) 82
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 2 cut(s) 106, 567
NdeII GATC 4 cut(s) 18, 169, 229, 553
NlaIII CATG 3 cut(s) 158, 400, 428
NlaIV GGNNCC 1 cut(s) 34
NspI RCATGY 1 cut(s) 400
NspV TTCGAA 1 cut(s) 521
PaeR7I CTCGAG 1 cut(s) 464
PciI ACATGT 1 cut(s) 396
PciSI GCTCTTC 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PfeI GAWTC 2 cut(s) 486, 584
PkrI GCNGC 2 cut(s) 334, 569
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PscI ACATGT 1 cut(s) 396
Psp124BI GAGCTC 1 cut(s) 471
PspFI CCCAGC 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 84
PsuI RGATCY 2 cut(s) 169, 553
PvuII CAGCTG 1 cut(s) 177
RsaI GTAC 3 cut(s) 118, 149, 165
RsaNI GTAC 3 cut(s) 117, 148, 164
SacI GAGCTC 1 cut(s) 471
SapI GCTCTTC 1 cut(s) 445
SatI GCNGC 2 cut(s) 333, 568
Sau3AI GATC 4 cut(s) 18, 169, 229, 553
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 1 cut(s) 105
SduI GDGCHC 4 cut(s) 192, 274, 357, 471
SfcI CTRYAG 1 cut(s) 382
Sfr274I CTCGAG 1 cut(s) 464
SfuI TTCGAA 1 cut(s) 521
SlaI CTCGAG 1 cut(s) 464
SmlI CTYRAG 2 cut(s) 464, 476
SmoI CTYRAG 2 cut(s) 464, 476
Sse9I AATT 2 cut(s) 200, 517
SsiI CCGC 4 cut(s) 107, 292, 499, 588
SspMI CTAG 1 cut(s) 549
SstI GAGCTC 1 cut(s) 471
TaaI ACNGT 2 cut(s) 276, 298
TaiI ACGT 3 cut(s) 106, 135, 345
TaqI TCGA 4 cut(s) 192, 320, 465, 521
TasI AATT 2 cut(s) 200, 517
TatI WGTACW 1 cut(s) 163
TfiI GAWTC 2 cut(s) 486, 584
TscAI CASTG 2 cut(s) 279, 292
TseI GCWGC 2 cut(s) 332, 567
TspDTI ATGAA 2 cut(s) 116, 609
TspGWI ACGGA 2 cut(s) 104, 299
TspRI CASTG 2 cut(s) 279, 292
VneI GTGCAC 1 cut(s) 353
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 400
XhoI CTCGAG 1 cut(s) 464
XspI CTAG 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.