MD16G1114600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0013724
Physical Location & Seq
Forward (+)
8122292 .. 8125345
3054 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1114600.v1.1.491

Sequence Viewer

Length: 273 bp
ATGACCAGTGTGTGGACGTTTTTGCCCCTCCATTTTTCCTCTGTCTCGCTTGCTATGTCCATATTTGTACAGTCGAATGACTGTTTTGCCCATTCACTCCACGCGTCCGTCATCGACTCACCCTCTATTTGGGTTGCGTCTTCTGGATTTTTCTGTTTGTTTCCGCCGGTCTCTCACACATCTCAGTTCTATTGTTCTGCAACTCACCCTTTCTCGCTATCCCTTTTTGCCACCGCTCCGATTCCGCCTGTGTTGACAGCCTTCAAACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.81

Weight (kDa)

6.47

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 12
AccBSI CCGCTC 1 cut(s) 236
AccII CGCG 1 cut(s) 104
AciI CCGC 3 cut(s) 164, 234, 245
AfaI GTAC 1 cut(s) 69
AfiI CCNNNNNNNGG 2 cut(s) 12, 129
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 1 cut(s) 265
Alw26I GTCTC 2 cut(s) 49, 175
AsuHPI GGTGA 2 cut(s) 111, 197
BbsI GAAGAC 1 cut(s) 132
BcoDI GTCTC 2 cut(s) 49, 175
BfmI CTRYAG 1 cut(s) 269
BpiI GAAGAC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 175
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 129
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 6
BseLI CCNNNNNNNGG 2 cut(s) 12, 129
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 6
Bsh1236I CGCG 1 cut(s) 104
BsiSI CCGG 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 12, 129
BsmAI GTCTC 2 cut(s) 49, 175
Bso31I GGTCTC 1 cut(s) 175
Bsp1407I TGTACA 1 cut(s) 67
BspACI CCGC 3 cut(s) 164, 234, 245
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 175
BsrBI CCGCTC 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 166
BsrGI TGTACA 1 cut(s) 67
BsrI ACTGG 1 cut(s) 6
BssAI RCCGGY 1 cut(s) 166
Bst4CI ACNGT 2 cut(s) 72, 83
BstAUI TGTACA 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 183
BstFNI CGCG 1 cut(s) 104
BstMAI GTCTC 2 cut(s) 49, 175
BstSFI CTRYAG 1 cut(s) 269
BstUI CGCG 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 51
Cfr10I RCCGGY 1 cut(s) 166
CseI GACGC 2 cut(s) 93, 126
Csp6I GTAC 1 cut(s) 68
CviJI RGCY 1 cut(s) 260
CviKI_1 RGCY 1 cut(s) 260
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 1 cut(s) 183
EciI GGCGGA 2 cut(s) 153, 234
Eco31I GGTCTC 1 cut(s) 175
FaiI YATR 3 cut(s) 56, 62, 271
HapII CCGG 1 cut(s) 167
HgaI GACGC 2 cut(s) 93, 126
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HinfI GANTC 2 cut(s) 116, 241
HpaII CCGG 1 cut(s) 167
HphI GGTGA 2 cut(s) 111, 197
Hpy166II GTNNAC 2 cut(s) 15, 255
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 1 cut(s) 144
Hpy8I GTNNAC 2 cut(s) 15, 255
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 2 cut(s) 72, 83
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 1 cut(s) 17
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 4 cut(s) 19, 129, 180, 261
MaeII ACGT 1 cut(s) 17
MbiI CCGCTC 1 cut(s) 236
MboII GAAGA 1 cut(s) 132
MluI ACGCGT 1 cut(s) 102
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 3 cut(s) 38, 49, 133
MspI CCGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 104
PfeI GAWTC 1 cut(s) 241
PflMI CCANNNNNTGG 1 cut(s) 12
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
SchI GAGTC 1 cut(s) 110
SetI ASST 1 cut(s) 20
SfcI CTRYAG 1 cut(s) 269
SgeI CNNG 9 cut(s) 18, 58, 62, 113, 115, 156, 179, 226, 260
SsiI CCGC 3 cut(s) 164, 234, 245
TaaI ACNGT 2 cut(s) 72, 83
TaiI ACGT 1 cut(s) 20
TaqI TCGA 2 cut(s) 74, 114
TatI WGTACW 1 cut(s) 67
TfiI GAWTC 1 cut(s) 241
TscAI CASTG 1 cut(s) 13
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 1 cut(s) 13
Van91I CCANNNNNTGG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.