pycom01g20530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0013724
Physical Location & Seq
Forward (+)
18914051 .. 18914935
885 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g20530.2

Sequence Viewer

Length: 303 bp
ATGCACCTTTTCGTTGGATTTTCTTCCCCTTATAGTGTTATACACGTGTTGCTCATCGTGGAGGGGAAGAAACATGGAAAAGCTGGCTCTTCCATTTGCTTCCACAGATTTCTCGAGCTCTCTCTCAAGCTCCGAATCGTTGGCCTCCGCGAGAAGGAAATCGCCAATTCGAAAGCTTGGGTTTCCTGTGGCTTTCTCACTAGAGATCTTTGCCATCACTGCTCCACCAAACTTGCATCCGCTCTTTCGAACAGGTGGTGTTCTGATTTTTCATTCGTTCTCATCACTTCTACAAGAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.18

Weight (kDa)

9.55

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 242
AccII CGCG 1 cut(s) 150
AciI CCGC 2 cut(s) 148, 240
AcvI CACGTG 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 154
AflIII ACRYGT 2 cut(s) 43, 45
AluBI AGCT 4 cut(s) 83, 118, 130, 176
AluI AGCT 4 cut(s) 83, 118, 130, 176
Alw21I GWGCWC 1 cut(s) 120
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 1 cut(s) 142
AsuII TTCGAA 2 cut(s) 170, 248
AvaI CYCGRG 1 cut(s) 113
BanII GRGCYC 1 cut(s) 120
BbrPI CACGTG 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 120
BccI CCATC 1 cut(s) 222
BfaI CTAG 1 cut(s) 201
BglII AGATCT 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 113
BmsI GCATC 1 cut(s) 245
Bpu14I TTCGAA 2 cut(s) 170, 248
BpuEI CTTGAG 1 cut(s) 110
BsaAI YACGTR 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 154
BseGI GGATG 1 cut(s) 236
BseLI CCNNNNNNNGG 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 154
BsnI GGCC 1 cut(s) 144
BsoBI CYCGRG 1 cut(s) 113
Bsp119I TTCGAA 2 cut(s) 170, 248
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 2 cut(s) 148, 240
BspANI GGCC 1 cut(s) 144
BspFNI CGCG 1 cut(s) 150
BspQI GCTCTTC 1 cut(s) 94
BspT104I TTCGAA 2 cut(s) 170, 248
BsrBI CCGCTC 1 cut(s) 242
BssMI GATC 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 94
BstBAI YACGTR 1 cut(s) 46
BstBI TTCGAA 2 cut(s) 170, 248
BstC8I GCNNGC 1 cut(s) 85
BstF5I GGATG 1 cut(s) 236
BstFNI CGCG 1 cut(s) 150
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 219
BstUI CGCG 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 1 cut(s) 236
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 85
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviAII CATG 1 cut(s) 74
CviJI RGCY 7 cut(s) 83, 87, 118, 130, 144, 176, 192
CviKI_1 RGCY 7 cut(s) 83, 87, 118, 130, 144, 176, 192
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Ecl136II GAGCTC 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 118
Eco72I CACGTG 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 113
EcoICRI GAGCTC 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 120
FaeI CATG 1 cut(s) 77
FaiI YATR 3 cut(s) 33, 41, 75
FatI CATG 1 cut(s) 73
FokI GGATG 1 cut(s) 223
FriOI GRGCYC 1 cut(s) 120
FspBI CTAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 144
Hin1II CATG 1 cut(s) 77
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 1 cut(s) 135
Hpy188I TCNGA 2 cut(s) 134, 265
Hpy188III TCNNGA 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 2 cut(s) 4, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 219
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 1 cut(s) 77
Kzo9I GATC 1 cut(s) 205
LguI GCTCTTC 1 cut(s) 94
LmnI GCTCC 2 cut(s) 135, 227
LpnPI CCDG 3 cut(s) 69, 199, 238
LweI GCATC 1 cut(s) 245
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 45
MalI GATC 1 cut(s) 207
MbiI CCGCTC 1 cut(s) 242
MboI GATC 1 cut(s) 205
MboII GAAGA 3 cut(s) 15, 79, 81
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 1 cut(s) 166
MnlI CCTC 3 cut(s) 55, 155, 290
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 219
NdeII GATC 1 cut(s) 205
NlaIII CATG 1 cut(s) 77
NspV TTCGAA 2 cut(s) 170, 248
PaeR7I CTCGAG 1 cut(s) 113
PciSI GCTCTTC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 135
PmaCI CACGTG 1 cut(s) 46
PmlI CACGTG 1 cut(s) 46
Ppu21I YACGTR 1 cut(s) 46
Psp124BI GAGCTC 1 cut(s) 120
PspCI CACGTG 1 cut(s) 46
PsuI RGATCY 1 cut(s) 205
SacI GAGCTC 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 94
Sau3AI GATC 1 cut(s) 205
SduI GDGCHC 1 cut(s) 120
SetI ASST 8 cut(s) 9, 48, 85, 120, 132, 178, 257, 301
SfaNI GCATC 1 cut(s) 245
Sfr274I CTCGAG 1 cut(s) 113
SfuI TTCGAA 2 cut(s) 170, 248
SlaI CTCGAG 1 cut(s) 113
SmlI CTYRAG 2 cut(s) 113, 125
SmoI CTYRAG 2 cut(s) 113, 125
Sse9I AATT 1 cut(s) 166
SsiI CCGC 2 cut(s) 148, 240
SspMI CTAG 1 cut(s) 201
SstI GAGCTC 1 cut(s) 120
TaiI ACGT 1 cut(s) 48
TaqI TCGA 3 cut(s) 114, 170, 248
TasI AATT 1 cut(s) 166
TfiI GAWTC 1 cut(s) 135
TscAI CASTG 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 261
TspRI CASTG 1 cut(s) 224
XhoI CTCGAG 1 cut(s) 113
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.