MD02G1173800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0013724
Physical Location & Seq
Reverse (-)
15282470 .. 15285702
3233 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1173800.v1.1.491

Sequence Viewer

Length: 390 bp
ATGGGTATTGTTTCTCTCTACAGGTTACTTGGAGAAGTCTGTGAAGGGTCAATAGGACAAGGTGGATTGCGTTTCAAAGTACAAAAAATACAGGGCCTGCCTCTCTATGCGTTTCCAGTCTTCCAAAAATCGTGTTCGTGGAGGCGATTTGAGACAGATTTGAAGCTCGGCTACAGAGATTTGATTCAAATTGGTGGATTTGGTTTGCAGGTGCTTCCAAGGGACCTGCTCTATGCTCTCGCTTCCCAATTGCCTCTGTTGGGTTTGGAAAAGCTACAGACAGCATTGAATTGGAAGAATGATGAAAGTGCTTACATTTTGTTGCAAGAGTTGGAATTTCAATATTGCGTGGAGGAAGTTCCTTGGGAAAAAATTGAGCATATATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.86

Weight (kDa)

5.42

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 199
Acc36I ACCTGC 2 cut(s) 199, 234
AcsI RAATTY 1 cut(s) 335
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 260
AgsI TTSAA 5 cut(s) 76, 163, 188, 289, 341
AluBI AGCT 2 cut(s) 166, 274
AluI AGCT 2 cut(s) 166, 274
Alw26I GTCTC 1 cut(s) 146
AlwNI CAGNNNCTG 1 cut(s) 97
AoxI GGCC 1 cut(s) 94
ApoI RAATTY 1 cut(s) 335
AspS9I GGNCC 2 cut(s) 94, 223
AvaII GGWCC 1 cut(s) 223
BarI GAAGNNNNNNTAC 2 cut(s) 155, 187
BbsI GAAGAC 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 146
BfmI CTRYAG 3 cut(s) 19, 172, 275
BfuAI ACCTGC 2 cut(s) 199, 234
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 94, 223
BmiI GGNNCC 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 218, 362
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 218, 362
BseLI CCNNNNNNNGG 1 cut(s) 260
BseNI ACTGG 1 cut(s) 116
BshFI GGCC 1 cut(s) 96
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 1 cut(s) 96
BspANI GGCC 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 224
BspMI ACCTGC 2 cut(s) 199, 234
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 218, 362
BssT1I CCWWGG 2 cut(s) 218, 362
BstC8I GCNNGC 1 cut(s) 98
BstMAI GTCTC 1 cut(s) 146
BstSFI CTRYAG 3 cut(s) 19, 172, 275
BstV2I GAAGAC 1 cut(s) 112
BsuRI GGCC 1 cut(s) 96
BveI ACCTGC 2 cut(s) 199, 234
Cac8I GCNNGC 1 cut(s) 98
CaiI CAGNNNCTG 1 cut(s) 97
Cfr13I GGNCC 2 cut(s) 94, 223
Csp6I GTAC 1 cut(s) 80
CviJI RGCY 4 cut(s) 96, 166, 171, 274
CviKI_1 RGCY 4 cut(s) 96, 166, 171, 274
CviQI GTAC 1 cut(s) 80
Eco130I CCWWGG 2 cut(s) 218, 362
Eco47I GGWCC 1 cut(s) 223
EcoO109I RGGNCCY 2 cut(s) 94, 223
EcoT14I CCWWGG 2 cut(s) 218, 362
ErhI CCWWGG 2 cut(s) 218, 362
FaiI YATR 5 cut(s) 108, 234, 381, 383, 385
FaqI GGGAC 1 cut(s) 236
HaeIII GGCC 1 cut(s) 96
HinfI GANTC 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 208, 325
LpnPI CCDG 6 cut(s) 7, 77, 110, 129, 194, 239
MaeIII GTNAC 1 cut(s) 24
MboII GAAGA 2 cut(s) 112, 307
MfeI CAATTG 1 cut(s) 248
MluCI AATT 5 cut(s) 189, 248, 289, 335, 372
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 4 cut(s) 111, 135, 264, 346
MunI CAATTG 1 cut(s) 248
NlaIV GGNNCC 1 cut(s) 224
NmeAIII GCCGAG 1 cut(s) 147
PaqCI CACCTGC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 184
PpuMI RGGWCCY 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 224
PspPI GGNCC 2 cut(s) 94, 223
PspPPI RGGWCCY 1 cut(s) 223
PstNI CAGNNNCTG 1 cut(s) 97
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
Sau96I GGNCC 2 cut(s) 94, 223
SetI ASST 6 cut(s) 26, 64, 168, 213, 228, 276
SfcI CTRYAG 3 cut(s) 19, 172, 275
SinI GGWCC 1 cut(s) 223
Sse9I AATT 5 cut(s) 189, 248, 289, 335, 372
SspI AATATT 1 cut(s) 344
StyI CCWWGG 2 cut(s) 218, 362
TasI AATT 5 cut(s) 189, 248, 289, 335, 372
TatI WGTACW 1 cut(s) 79
TfiI GAWTC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.