Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0013733

Physical Location & Seq

Genomic Coordinates Forward (+)

4468447 .. 4469497

Gene Structure 1051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1026000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGATACCGCCATGACAGCCCACGAAGCCTCCTCTTCATCCTCCTCCAAGTCAAAACTTTGGAATTACGACTTGTTCTTGAGCTTCAGAGGTGAAGACACGCGCAACGGCTTCACAGGCCACCTCCACGCGGCATTAAAAGACAGGGGATACCAGGCTTATATGGATGAGGACGATCTAAAAAGAGGGGAAGAAATAAAAGAGGAACTGTTCCGGGCAATCGAAGGGTCGAGGATCTCCATCATTGTCTTCTCAAAGAGGTATGCGGATTCCAGTTGGTGTCTTGACGAGCTGGTGAAGATCATGGAGTGCAGATCCAAACTGGGGCGACATGTTTTGCCAATATTCTATCATGTTGATCCTTCACATGTCAGGAAGCAGGATGGAGATTTAGCCGAAGCATTTCTGAAGCACGAAGAGGGCATCGGTGAAGGAACAGATGGCAAGAAACGTGAAGATAAACAAGAAAGGGTAAAGCAGTGGAGAAAGGCTCTTACAGAAGCTGCAAACTTGTCTGGCCACCATCTTCATATCACTGATAATGGCAAATCTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

186

Amino Acids

21.19

Weight (kDa)

6.36

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	22 - 177	1.8e-48	TIR domain
TIR_2	PF13676	26 - 122	4e-18	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013733)

Species	Orthologous Gene IDs
malus_domestica	MD00G1026000.v1.1 MD00G1027900.v1.1 MD02G1023600.v1.1 MD02G1028400.v1.1 MD02G1038400.v1.1 MD02G1050400.v1.1 MD02G1051400.v1.1 MD02G1052300.v1.1 MD02G1054500.v1.1 MD02G1056000.v1.1 MD02G1063200.v1.1 MD07G1238100.v1.1
pyrus_communis	pycom02g02120 pycom02g03460 pycom02g03680 pycom02g03700 pycom02g03740 pycom02g04500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	103, 131
AciI	CCGC	3 cut(s)	9, 131, 266
AclWI	GGATC	3 cut(s)	242, 309, 353
AcoI	YGGCCR	1 cut(s)	517
AcuI	CTGAAG	2 cut(s)	70, 428
AfiI	CCNNNNNNNGG	2 cut(s)	130, 324
AflIII	ACRYGT	2 cut(s)	331, 367
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	3 cut(s)	84, 292, 503
AluI	AGCT	3 cut(s)	84, 292, 503
AlwI	GGATC	3 cut(s)	242, 309, 353
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	2 cut(s)	118, 517
ApeKI	GCWGC	1 cut(s)	503
Asp700I	GAANNNNTTC	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	3 cut(s)	104, 307, 440
BalI	TGGCCA	1 cut(s)	519
BbsI	GAAGAC	2 cut(s)	102, 241
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	4 cut(s)	248, 377, 434, 531
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	155
BciVI	GTATCC	1 cut(s)	143
BcnI	CCSGG	1 cut(s)	215
BfuI	GTATCC	1 cut(s)	143
BisI	GCNGC	2 cut(s)	132, 504
BlsI	GCNGC	2 cut(s)	133, 505
Bme1390I	CCNGG	2 cut(s)	155, 215
BmrFI	CCNGG	2 cut(s)	155, 215
BmrI	ACTGGG	1 cut(s)	332
BmsI	GCATC	1 cut(s)	432
BmuI	ACTGGG	1 cut(s)	332
BpiI	GAAGAC	2 cut(s)	102, 241
BplI	GAGNNNNNCTC	2 cut(s)	475, 507
BpuEI	CTTGAG	1 cut(s)	100
BpuMI	CCSGG	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	239
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 324
Bse1I	ACTGG	2 cut(s)	273, 327
Bse8I	GATNNNNATC	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	155
BseGI	GGATG	3 cut(s)	38, 172, 388
BseJI	GATNNNNATC	1 cut(s)	239
BseLI	CCNNNNNNNGG	2 cut(s)	130, 324
BseNI	ACTGG	2 cut(s)	273, 327
BseRI	GAGGAG	2 cut(s)	22, 34
BseXI	GCAGC	1 cut(s)	490
BsgI	GTGCAG	1 cut(s)	331
Bsh1236I	CGCG	2 cut(s)	103, 131
BshFI	GGCC	2 cut(s)	120, 519
BsiSI	CCGG	1 cut(s)	214
BslI	CCNNNNNNNGG	2 cut(s)	130, 324
BsnI	GGCC	2 cut(s)	120, 519
Bsp143I	GATC	5 cut(s)	175, 234, 300, 314, 358
BspACI	CCGC	3 cut(s)	9, 131, 266
BspANI	GGCC	2 cut(s)	120, 519
BspFNI	CGCG	2 cut(s)	103, 131
BspPI	GGATC	3 cut(s)	242, 309, 353
BsrI	ACTGG	2 cut(s)	273, 327
BssMI	GATC	5 cut(s)	175, 234, 300, 314, 358
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	210
Bst6I	CTCTTC	2 cut(s)	40, 411
BstF5I	GGATG	3 cut(s)	38, 172, 388
BstFNI	CGCG	2 cut(s)	103, 131
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	5 cut(s)	178, 237, 303, 317, 361
BstMBI	GATC	5 cut(s)	175, 234, 300, 314, 358
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 26, 117
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	2 cut(s)	335, 371
BstSCI	CCNGG	2 cut(s)	153, 213
BstUI	CGCG	2 cut(s)	103, 131
BstV1I	GCAGC	1 cut(s)	490
BstV2I	GAAGAC	2 cut(s)	102, 241
BstX2I	RGATCY	2 cut(s)	234, 314
BstYI	RGATCY	2 cut(s)	234, 314
BsuI	GTATCC	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	120, 519
BtsCI	GGATG	3 cut(s)	38, 172, 388
BtsI	GCAGTG	1 cut(s)	485
BtsIMutI	CAGTG	2 cut(s)	485, 534
CaiI	CAGNNNCTG	1 cut(s)	503
CfoI	GCGC	1 cut(s)	105
CviAII	CATG	5 cut(s)	13, 304, 332, 353, 368
DpnI	GATC	5 cut(s)	177, 236, 302, 316, 360
DpnII	GATC	5 cut(s)	175, 234, 300, 314, 358
EaeI	YGGCCR	1 cut(s)	517
Eam1104I	CTCTTC	2 cut(s)	40, 411
EarI	CTCTTC	2 cut(s)	40, 411
Eco57I	CTGAAG	2 cut(s)	70, 428
EcoRII	CCWGG	1 cut(s)	153
FaeI	CATG	5 cut(s)	16, 307, 335, 356, 371
FaiI	YATR	9 cut(s)	14, 162, 164, 264, 305, 333, 354, 369, 531
FatI	CATG	5 cut(s)	12, 303, 331, 352, 367
Fnu4HI	GCNGC	2 cut(s)	132, 504
FokI	GGATG	3 cut(s)	25, 179, 395
Fsp4HI	GCNGC	2 cut(s)	132, 504
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	2 cut(s)	132, 504
HaeIII	GGCC	2 cut(s)	120, 519
HapII	CCGG	1 cut(s)	214
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	5 cut(s)	16, 307, 335, 356, 371
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	1 cut(s)	214
HphI	GGTGA	3 cut(s)	104, 307, 440
Hpy188I	TCNGA	2 cut(s)	89, 408
Hpy188III	TCNNGA	3 cut(s)	79, 284, 373
HpyAV	CCTTC	3 cut(s)	218, 372, 425
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	2 cut(s)	312, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 26, 117
HpySE526I	ACGT	1 cut(s)	451
Hsp92II	CATG	5 cut(s)	16, 307, 335, 356, 371
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	5 cut(s)	175, 234, 300, 314, 358
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	1 cut(s)	432
MaeII	ACGT	1 cut(s)	451
MalI	GATC	5 cut(s)	177, 236, 302, 316, 360
MboI	GATC	5 cut(s)	175, 234, 300, 314, 358
MboII	GAAGA	8 cut(s)	27, 107, 203, 241, 310, 428, 467, 518
MflI	RGATCY	2 cut(s)	234, 314
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	1 cut(s)	64
MluNI	TGGCCA	1 cut(s)	519
Mox20I	TGGCCA	1 cut(s)	519
MroXI	GAANNNNTTC	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	1 cut(s)	137
Msp20I	TGGCCA	1 cut(s)	519
MspI	CCGG	1 cut(s)	214
MspR9I	CCNGG	2 cut(s)	155, 215
MvaI	CCWGG	1 cut(s)	155
MvnI	CGCG	2 cut(s)	103, 131
MwoI	GCNNNNNNNGC	3 cut(s)	17, 26, 117
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	5 cut(s)	175, 234, 300, 314, 358
NlaIII	CATG	5 cut(s)	16, 307, 335, 356, 371
NspI	RCATGY	2 cut(s)	335, 371
PciI	ACATGT	2 cut(s)	331, 367
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	2 cut(s)	133, 505
PscI	ACATGT	2 cut(s)	331, 367
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	2 cut(s)	234, 314
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	2 cut(s)	132, 504
Sau3AI	GATC	5 cut(s)	175, 234, 300, 314, 358
ScrFI	CCNGG	2 cut(s)	155, 215
SetI	ASST	7 cut(s)	86, 94, 126, 263, 294, 454, 505
SfaNI	GCATC	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
Sse9I	AATT	1 cut(s)	64
SsiI	CCGC	3 cut(s)	9, 131, 266
SspI	AATATT	1 cut(s)	345
StyD4I	CCNGG	2 cut(s)	153, 213
TaaI	ACNGT	1 cut(s)	210
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	2 cut(s)	222, 230
TasI	AATT	1 cut(s)	64
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	2 cut(s)	485, 541
TseI	GCWGC	1 cut(s)	503
TspDTI	ATGAA	2 cut(s)	27, 518
TspRI	CASTG	2 cut(s)	485, 541
XceI	RCATGY	2 cut(s)	335, 371
XmnI	GAANNNNTTC	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.