Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013733

Physical Location & Seq

Genomic Coordinates Forward (+)

31021056 .. 31024784

Gene Structure 3729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1238100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGACATCCCATGAAGCCTCCTCCTCAAAACTCTGGAATTACGACGTGTTCTTGAGTTTTAGAGGCGAAGATACACGCAACGGCTTCACGGGCCACCTTCACGCTGCGTTACAAGACGGGGGCTTCAATGCCTTTATTGATGAGGATAATCTGAAAAGAGGGGAAGAAATAAAACCCGAACTGTTGCGGGCAATCGAAGAGTCCAGAATCTCGGTAATTGTCTTCTCAAAGAGGTACGCGGAATCAAGATGGTGTCTTGACGAGCTGGTAAAGATCATGGAATGTAGAGAAAAGCTGGGGCAAAAGGTTTTGCCAATATTCTATCACGTCGATCCTTCACATGTGAGGAAGCAGGAAGGTTGTTTAGCCCGAGCATTTAAGAAGCACGAAGATGGCATCCTTGAAGAAAAAGATGACAAAGAACGCGAAGCCAAGAAAGAAAGGGTAAAGCAGTGGAAAGAGGCTCTTACTCAAGCTGCAAATTTGTCTGGCCACGATCTTAATAACGGGCATGAAGCAAAGCTTATTAGGAGAATTGTTGAAGAGAATATTAGGGAATTGCTTCCCCGCACAGATGAATTACACGTGGCCAAATACCCGGTTGGAATCGACTCTCGTGTTCAACCAATTATCAGTGATATTTCAAGTGGTGGATCAGATGACGTTAAAATGGTTGGAATTTGGGGGATGGGTGGATTGGGCAAAACAACTGTTGCCAAAGCCATTTATAACAAAATTCATCATAGCTTCCAATTCAAATGCTTCCTTGAAGATGTTTGCCACCATGGTACAAGCCAACATGGTCTGCTCTGTTTGCAACAAAAATTTATTTCTGACATCTTACAACATGCCAAGCCTCAATTATTAGTAGCGTTGCTGCAGGGATCCCTGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

299

Amino Acids

33.86

Weight (kDa)

6.74

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	13 - 187	1.1e-53	TIR domain
TIR_2	PF13676	16 - 112	3.2e-17	TIR domain
NB-ARC	PF00931	219 - 251	7.5e-07	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013733)

Species	Orthologous Gene IDs
malus_domestica	MD00G1026000.v1.1 MD00G1027900.v1.1 MD02G1023600.v1.1 MD02G1028400.v1.1 MD02G1038400.v1.1 MD02G1050400.v1.1 MD02G1051400.v1.1 MD02G1052300.v1.1 MD02G1054500.v1.1 MD02G1056000.v1.1 MD02G1063200.v1.1 MD07G1238100.v1.1
pyrus_communis	pycom02g02120 pycom02g03460 pycom02g03680 pycom02g03700 pycom02g03740 pycom02g04500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	729, 895
AccII	CGCG	2 cut(s)	239, 426
AciI	CCGC	3 cut(s)	187, 239, 568
AclWI	GGATC	4 cut(s)	326, 661, 879, 892
AcoI	YGGCCR	2 cut(s)	490, 588
AcsI	RAATTY	4 cut(s)	481, 678, 735, 824
AcvI	CACGTG	1 cut(s)	586
AfaI	GTAC	2 cut(s)	236, 790
AflIII	ACRYGT	3 cut(s)	45, 340, 583
AgsI	TTSAA	7 cut(s)	127, 404, 542, 623, 645, 757, 770
AjiI	CACGTC	2 cut(s)	46, 328
AluBI	AGCT	5 cut(s)	265, 295, 476, 523, 747
AluI	AGCT	5 cut(s)	265, 295, 476, 523, 747
AlwI	GGATC	4 cut(s)	326, 661, 879, 892
Ama87I	CYCGRG	1 cut(s)	369
AoxI	GGCC	3 cut(s)	91, 490, 588
ApeKI	GCWGC	3 cut(s)	104, 476, 877
ApoI	RAATTY	4 cut(s)	481, 678, 735, 824
Asp700I	GAANNNNTTC	1 cut(s)	561
AspS9I	GGNCC	1 cut(s)	91
AsuC2I	CCSGG	1 cut(s)	599
AvaI	CYCGRG	1 cut(s)	369
BalI	TGGCCA	2 cut(s)	492, 590
BamHI	GGATCC	1 cut(s)	884
BauI	CACGAG	1 cut(s)	615
BbrPI	CACGTG	1 cut(s)	586
BbsI	GAAGAC	1 cut(s)	214
BbvI	GCAGC	3 cut(s)	91, 463, 864
BccI	CCATC	3 cut(s)	243, 386, 682
BceAI	ACGGC	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	599
BfmI	CTRYAG	1 cut(s)	878
BisI	GCNGC	3 cut(s)	105, 477, 878
BlsI	GCNGC	3 cut(s)	106, 478, 879
Bme1390I	CCNGG	1 cut(s)	599
BmeT110I	CYCGRG	1 cut(s)	369
BmgBI	CACGTC	2 cut(s)	46, 328
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	886
BmrFI	CCNGG	1 cut(s)	599
BmsI	GCATC	1 cut(s)	405
BpiI	GAAGAC	1 cut(s)	214
BpuEI	CTTGAG	2 cut(s)	73, 456
BpuMI	CCSGG	1 cut(s)	599
BsaAI	YACGTR	1 cut(s)	586
BsaJI	CCNNGG	1 cut(s)	784
BseDI	CCNNGG	1 cut(s)	784
BseGI	GGATG	3 cut(s)	5, 396, 693
BseRI	GAGGAG	2 cut(s)	10, 13
BseXI	GCAGC	3 cut(s)	91, 463, 864
BseYI	CCCAGC	1 cut(s)	295
Bsh1236I	CGCG	2 cut(s)	239, 426
BshFI	GGCC	3 cut(s)	93, 492, 590
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	599
BsnI	GGCC	3 cut(s)	93, 492, 590
BsoBI	CYCGRG	1 cut(s)	369
Bsp143I	GATC	5 cut(s)	273, 331, 496, 653, 884
Bsp19I	CCATGG	1 cut(s)	784
BspACI	CCGC	3 cut(s)	187, 239, 568
BspANI	GGCC	3 cut(s)	93, 492, 590
BspFNI	CGCG	2 cut(s)	239, 426
BspLI	GGNNCC	1 cut(s)	886
BspMAI	CTGCAG	1 cut(s)	882
BspPI	GGATC	4 cut(s)	326, 661, 879, 892
BssECI	CCNNGG	1 cut(s)	784
BssMI	GATC	5 cut(s)	273, 331, 496, 653, 884
BssSI	CACGAG	1 cut(s)	615
BssT1I	CCWWGG	1 cut(s)	784
Bst2BI	CACGAG	1 cut(s)	615
Bst4CI	ACNGT	2 cut(s)	183, 712
Bst6I	CTCTTC	2 cut(s)	192, 537
BstBAI	YACGTR	1 cut(s)	586
BstC8I	GCNNGC	1 cut(s)	189
BstDSI	CCRYGG	1 cut(s)	784
BstF5I	GGATG	3 cut(s)	5, 396, 693
BstFNI	CGCG	2 cut(s)	239, 426
BstKTI	GATC	5 cut(s)	276, 334, 499, 656, 887
BstMBI	GATC	5 cut(s)	273, 331, 496, 653, 884
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 814
BstNSI	RCATGY	2 cut(s)	344, 851
BstSCI	CCNGG	1 cut(s)	597
BstSFI	CTRYAG	1 cut(s)	878
BstUI	CGCG	2 cut(s)	239, 426
BstV1I	GCAGC	3 cut(s)	91, 463, 864
BstV2I	GAAGAC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	884
BstYI	RGATCY	1 cut(s)	884
BsuRI	GGCC	3 cut(s)	93, 492, 590
BtgI	CCRYGG	1 cut(s)	784
BtrI	CACGTC	2 cut(s)	46, 328
BtsCI	GGATG	3 cut(s)	5, 396, 693
BtsI	GCAGTG	1 cut(s)	458
BtsIMutI	CAGTG	2 cut(s)	458, 640
Cac8I	GCNNGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	235, 789
CviAII	CATG	7 cut(s)	11, 277, 341, 512, 785, 800, 848
CviQI	GTAC	2 cut(s)	235, 789
DpnI	GATC	5 cut(s)	275, 333, 498, 655, 886
DpnII	GATC	5 cut(s)	273, 331, 496, 653, 884
EaeI	YGGCCR	2 cut(s)	490, 588
Eam1104I	CTCTTC	2 cut(s)	192, 537
EarI	CTCTTC	2 cut(s)	192, 537
Eco130I	CCWWGG	1 cut(s)	784
Eco72I	CACGTG	1 cut(s)	586
Eco88I	CYCGRG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	784
ErhI	CCWWGG	1 cut(s)	784
FaeI	CATG	7 cut(s)	14, 280, 344, 515, 788, 803, 851
FalI	AAGNNNNNCTT	4 cut(s)	450, 482, 507, 539
FatI	CATG	7 cut(s)	10, 276, 340, 511, 784, 799, 847
FauI	CCCGC	2 cut(s)	180, 575
Fnu4HI	GCNGC	3 cut(s)	105, 477, 878
FokI	GGATG	2 cut(s)	383, 700
Fsp4HI	GCNGC	3 cut(s)	105, 477, 878
GluI	GCNGC	3 cut(s)	105, 477, 878
GsaI	CCCAGC	1 cut(s)	299
HaeIII	GGCC	3 cut(s)	93, 492, 590
HapII	CCGG	1 cut(s)	599
Hin1II	CATG	7 cut(s)	14, 280, 344, 515, 788, 803, 851
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	5 cut(s)	200, 207, 242, 606, 611
HpaII	CCGG	1 cut(s)	599
Hpy188I	TCNGA	3 cut(s)	153, 658, 835
Hpy188III	TCNNGA	5 cut(s)	34, 52, 204, 246, 257
Hpy99I	CGWCG	2 cut(s)	47, 332
HpyAV	CCTTC	3 cut(s)	107, 345, 350
HpyCH4III	ACNGT	2 cut(s)	183, 712
HpyCH4IV	ACGT	4 cut(s)	45, 327, 585, 663
HpyCH4V	TGCA	3 cut(s)	479, 817, 880
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 814
HpySE526I	ACGT	4 cut(s)	45, 327, 585, 663
Hsp92II	CATG	7 cut(s)	14, 280, 344, 515, 788, 803, 851
Kzo9I	GATC	5 cut(s)	273, 331, 496, 653, 884
LpnPI	CCDG	8 cut(s)	19, 217, 251, 281, 338, 474, 612, 866
Lsp1109I	GCAGC	3 cut(s)	91, 463, 864
LweI	GCATC	1 cut(s)	405
MaeII	ACGT	4 cut(s)	45, 327, 585, 663
MaeIII	GTNAC	1 cut(s)	108
MalI	GATC	5 cut(s)	275, 333, 498, 655, 886
MboI	GATC	5 cut(s)	273, 331, 496, 653, 884
MboII	GAAGA	8 cut(s)	80, 176, 209, 214, 401, 416, 554, 782
MflI	RGATCY	1 cut(s)	884
MlsI	TGGCCA	2 cut(s)	492, 590
MluNI	TGGCCA	2 cut(s)	492, 590
MlyI	GAGTC	2 cut(s)	209, 605
MmeI	TCCRAC	2 cut(s)	583, 655
Mox20I	TGGCCA	2 cut(s)	492, 590
MroXI	GAANNNNTTC	1 cut(s)	561
MscI	TGGCCA	2 cut(s)	492, 590
MseI	TTAA	3 cut(s)	378, 501, 666
MslI	CAYNNNNRTG	1 cut(s)	390
Msp20I	TGGCCA	2 cut(s)	492, 590
MspI	CCGG	1 cut(s)	599
MspR9I	CCNGG	1 cut(s)	599
MvnI	CGCG	2 cut(s)	239, 426
MwoI	GCNNNNNNNGC	2 cut(s)	90, 814
NciI	CCSGG	1 cut(s)	599
NcoI	CCATGG	1 cut(s)	784
NdeII	GATC	5 cut(s)	273, 331, 496, 653, 884
NlaIII	CATG	7 cut(s)	14, 280, 344, 515, 788, 803, 851
NlaIV	GGNNCC	1 cut(s)	886
NspI	RCATGY	2 cut(s)	344, 851
PciI	ACATGT	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	561
PfeI	GAWTC	3 cut(s)	207, 242, 606
PkrI	GCNGC	3 cut(s)	106, 478, 879
PleI	GAGTC	2 cut(s)	208, 605
PmaCI	CACGTG	1 cut(s)	586
PmlI	CACGTG	1 cut(s)	586
PpsI	GAGTC	2 cut(s)	208, 605
Ppu21I	YACGTR	1 cut(s)	586
PscI	ACATGT	1 cut(s)	340
PsiI	TTATAA	2 cut(s)	729, 895
PspCI	CACGTG	1 cut(s)	586
PspFI	CCCAGC	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	886
PspPI	GGNCC	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	882
PsuI	RGATCY	1 cut(s)	884
RsaI	GTAC	2 cut(s)	236, 790
RsaNI	GTAC	2 cut(s)	235, 789
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	3 cut(s)	378, 501, 666
SatI	GCNGC	3 cut(s)	105, 477, 878
Sau3AI	GATC	5 cut(s)	273, 331, 496, 653, 884
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	2 cut(s)	209, 605
ScrFI	CCNGG	1 cut(s)	599
SfaNI	GCATC	1 cut(s)	405
SfcI	CTRYAG	1 cut(s)	878
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	52, 471
SmoI	CTYRAG	2 cut(s)	52, 471
SsiI	CCGC	3 cut(s)	187, 239, 568
SspI	AATATT	2 cut(s)	318, 550
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	1 cut(s)	784
TaaI	ACNGT	2 cut(s)	183, 712
TaiI	ACGT	4 cut(s)	48, 330, 588, 666
TaqI	TCGA	3 cut(s)	195, 330, 609
TfiI	GAWTC	3 cut(s)	207, 242, 606
Tru1I	TTAA	3 cut(s)	378, 501, 666
Tru9I	TTAA	3 cut(s)	378, 501, 666
TscAI	CASTG	2 cut(s)	458, 640
TseI	GCWGC	3 cut(s)	104, 476, 877
TspDTI	ATGAA	4 cut(s)	27, 528, 591, 728
TspRI	CASTG	2 cut(s)	458, 640
XapI	RAATTY	4 cut(s)	481, 678, 735, 824
XceI	RCATGY	2 cut(s)	344, 851
XmnI	GAANNNNTTC	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.