Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0013733

Physical Location & Seq

Genomic Coordinates Reverse (-)

2475929 .. 2476465

Gene Structure 537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGACAGCCTACGAAGCCTCCTCTTCATCCTCCTTCAAGTCAAAACTTTGGAATTACGACGTGTTCTTGAGCTTTAGTGGCGAAGACACACGTAAGGGCTTCACGGGCCACCTCCACGATGCAATCGAAGACAGGGGATACAAGGCTTATATAGATGAGGACGATCTAAAAAGAGGGGAAGAAATAAAAGAGGAACTCTACCGGGGAATCGAAGAGTCAAGGATCTCTATCATTGTCTTCTCAAAGAAGTACGCAGATTCGAGTTGGTGTCTTGACAAGCTGGTGAAGATCATGGAGTGCAGATCCAAATTTGGGAGACTTGTTTTGCCAATATTCTCTCATGTCGATCCTTCACATGTCAGGAAGCAGAACGGAGATTTAGCTAAAGCATTTCAGAATTACGAAGAGGACATCCAGGAAGAAAAAGATGACAAGAAACGTGAAGCTAAACAAGAAAGGGTAAATCAGTGGAGAAAGGCTCTTACAGAGGCTGCAAATTTGGCTGGCCACCATCTTCAAATCACTGACAATACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

179

Amino Acids

20.69

Weight (kDa)

5.91

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	18 - 173	8.8e-45	TIR domain
TIR_2	PF13676	21 - 136	1.5e-18	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013733)

Species	Orthologous Gene IDs
malus_domestica	MD00G1026000.v1.1 MD00G1027900.v1.1 MD02G1023600.v1.1 MD02G1028400.v1.1 MD02G1038400.v1.1 MD02G1050400.v1.1 MD02G1051400.v1.1 MD02G1052300.v1.1 MD02G1054500.v1.1 MD02G1056000.v1.1 MD02G1063200.v1.1 MD07G1238100.v1.1
pyrus_communis	pycom02g02120 pycom02g03460 pycom02g03680 pycom02g03700 pycom02g03740 pycom02g04500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	230, 297, 341
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	2 cut(s)	308, 496
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	312
AflIII	ACRYGT	3 cut(s)	60, 89, 355
AgsI	TTSAA	2 cut(s)	37, 518
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	4 cut(s)	72, 280, 383, 446
AluI	AGCT	4 cut(s)	72, 280, 383, 446
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	3 cut(s)	230, 297, 341
AlwNI	CAGNNNCTG	1 cut(s)	491
AoxI	GGCC	2 cut(s)	106, 505
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	2 cut(s)	308, 496
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	507
BbsI	GAAGAC	3 cut(s)	90, 135, 229
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	1 cut(s)	519
BciT130I	CCWGG	1 cut(s)	416
BciVI	GTATCC	1 cut(s)	131
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	131
BisI	GCNGC	1 cut(s)	492
BlsI	GCNGC	1 cut(s)	493
Bme1390I	CCNGG	2 cut(s)	203, 416
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	106
BmrFI	CCNGG	2 cut(s)	203, 416
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	3 cut(s)	90, 135, 229
BplI	GAGNNNNNCTC	2 cut(s)	463, 495
BpuEI	CTTGAG	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	203
BsaAI	YACGTR	2 cut(s)	92, 534
BsaBI	GATNNNNATC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	202
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse8I	GATNNNNATC	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	2 cut(s)	26, 411
BseJI	GATNNNNATC	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	478
BsgI	GTGCAG	1 cut(s)	319
BshFI	GGCC	2 cut(s)	108, 507
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	1 cut(s)	310
BsnI	GGCC	2 cut(s)	108, 507
Bsp143I	GATC	5 cut(s)	163, 222, 288, 302, 346
BspANI	GGCC	2 cut(s)	108, 507
BspPI	GGATC	3 cut(s)	230, 297, 341
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	5 cut(s)	163, 222, 288, 302, 346
Bst2UI	CCWGG	1 cut(s)	416
Bst6I	CTCTTC	3 cut(s)	28, 207, 399
BstBAI	YACGTR	2 cut(s)	92, 534
BstC8I	GCNNGC	1 cut(s)	505
BstF5I	GGATG	2 cut(s)	26, 411
BstKTI	GATC	5 cut(s)	166, 225, 291, 305, 349
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	5 cut(s)	163, 222, 288, 302, 346
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 78, 105, 500
BstNI	CCWGG	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	2 cut(s)	201, 414
BstSNI	TACGTA	1 cut(s)	534
BstV1I	GCAGC	1 cut(s)	478
BstV2I	GAAGAC	3 cut(s)	90, 135, 229
BstX2I	RGATCY	2 cut(s)	222, 302
BstYI	RGATCY	2 cut(s)	222, 302
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	2 cut(s)	108, 507
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	26, 411
BtsIMutI	CAGTG	2 cut(s)	473, 522
Cac8I	GCNNGC	1 cut(s)	505
CaiI	CAGNNNCTG	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	3 cut(s)	292, 341, 356
CviQI	GTAC	1 cut(s)	250
DpnI	GATC	5 cut(s)	165, 224, 290, 304, 348
DpnII	GATC	5 cut(s)	163, 222, 288, 302, 346
EaeI	YGGCCR	1 cut(s)	505
Eam1104I	CTCTTC	3 cut(s)	28, 207, 399
EarI	CTCTTC	3 cut(s)	28, 207, 399
Eco105I	TACGTA	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	414
FaeI	CATG	3 cut(s)	295, 344, 359
FaiI	YATR	5 cut(s)	150, 152, 293, 342, 357
FatI	CATG	3 cut(s)	291, 340, 355
Fnu4HI	GCNGC	1 cut(s)	492
FokI	GGATG	2 cut(s)	13, 398
Fsp4HI	GCNGC	1 cut(s)	492
GluI	GCNGC	1 cut(s)	492
HaeIII	GGCC	2 cut(s)	108, 507
HapII	CCGG	1 cut(s)	202
Hin1II	CATG	3 cut(s)	295, 344, 359
HinfI	GANTC	3 cut(s)	207, 215, 257
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	396
Hpy188III	TCNNGA	3 cut(s)	67, 272, 361
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	43, 360
HpyCH4IV	ACGT	4 cut(s)	60, 91, 439, 533
HpyCH4V	TGCA	3 cut(s)	122, 300, 494
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 78, 105, 500
HpySE526I	ACGT	4 cut(s)	60, 91, 439, 533
Hsp92II	CATG	3 cut(s)	295, 344, 359
Kzo9I	GATC	5 cut(s)	163, 222, 288, 302, 346
LpnPI	CCDG	7 cut(s)	118, 215, 266, 346, 401, 428, 489
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	1 cut(s)	109
MaeII	ACGT	4 cut(s)	60, 91, 439, 533
MalI	GATC	5 cut(s)	165, 224, 290, 304, 348
MboI	GATC	5 cut(s)	163, 222, 288, 302, 346
MflI	RGATCY	2 cut(s)	222, 302
MlsI	TGGCCA	1 cut(s)	507
MluCI	AATT	4 cut(s)	52, 308, 397, 496
MluNI	TGGCCA	1 cut(s)	507
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	9 cut(s)	28, 31, 40, 122, 151, 167, 184, 400, 481
Mox20I	TGGCCA	1 cut(s)	507
MscI	TGGCCA	1 cut(s)	507
Msp20I	TGGCCA	1 cut(s)	507
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	2 cut(s)	203, 416
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	4 cut(s)	14, 78, 105, 500
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	5 cut(s)	163, 222, 288, 302, 346
NlaIII	CATG	3 cut(s)	295, 344, 359
NspI	RCATGY	1 cut(s)	359
PciI	ACATGT	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	207, 257
PfoI	TCCNGGA	1 cut(s)	414
PkrI	GCNGC	1 cut(s)	493
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Ppu21I	YACGTR	2 cut(s)	92, 534
PscI	ACATGT	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	2 cut(s)	222, 302
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SatI	GCNGC	1 cut(s)	492
Sau3AI	GATC	5 cut(s)	163, 222, 288, 302, 346
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	2 cut(s)	203, 416
SetI	ASST	9 cut(s)	63, 74, 94, 114, 282, 385, 442, 448, 536
SfaNI	GCATC	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SnaBI	TACGTA	1 cut(s)	534
Sse9I	AATT	4 cut(s)	52, 308, 397, 496
SspI	AATATT	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	201, 414
TaiI	ACGT	4 cut(s)	63, 94, 442, 536
TaqI	TCGA	4 cut(s)	126, 210, 260, 345
TasI	AATT	4 cut(s)	52, 308, 397, 496
TfiI	GAWTC	2 cut(s)	207, 257
TscAI	CASTG	2 cut(s)	473, 529
TseI	GCWGC	1 cut(s)	491
TspDTI	ATGAA	1 cut(s)	15
TspGWI	ACGGA	1 cut(s)	387
TspRI	CASTG	2 cut(s)	473, 529
XapI	RAATTY	2 cut(s)	308, 496
XceI	RCATGY	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.