Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0013733

Physical Location & Seq

Genomic Coordinates Reverse (-)

4389964 .. 4391063

Gene Structure 1100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1054500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAGTGCAGATACAAACCGGGGCGACATGTTTTACCAATATTCTATCATGTTGATCCTTCACATGTTAGGAAGCAGAATGAAGATTTAGCTCAAGCATTTCAGAAGCACGAAGAGGGCATCCGTGAAGAAAAAGATGACAAGGAACGTGAAACTAGACAAGAAAGGGTAAAGCAGTGGAGAAAGGCTCTTACAGAAGCTGCAAATTTGTCTGGCCAACATCTTCAAATCACTGACAAAGGGCGCGAAGCAAAGCTTATTAGAGAAATTGTTGACAAGATTATCCCGAAATGGCTTCCGATCGCAGAAGAATTACAAATGGCCAAGCACCCAGTTGGAATATATACTCGCATTCAAGATATCATCACTTATCTTTCAAATGCTGGATCAGATGTTGTTTGCATGGTTGGAATTTGGGGGATGGGTGGATTGGGTAAAACAACAGCTGCCAAAGCCATTTATAACAAAATTCATCATGAGTTCCAATTCAAAAGTTTCCTTGACAACGTTAGTGAAAAAGATCTGGTTGTTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

179

Amino Acids

20.55

Weight (kDa)

8.46

Isoelectric Point (pI)

33.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	1 - 104	8.2e-14	TIR domain
NB-ARC	PF00931	117 - 163	2.2e-06	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013733)

Species	Orthologous Gene IDs
malus_domestica	MD00G1026000.v1.1 MD00G1027900.v1.1 MD02G1023600.v1.1 MD02G1028400.v1.1 MD02G1038400.v1.1 MD02G1050400.v1.1 MD02G1051400.v1.1 MD02G1052300.v1.1 MD02G1054500.v1.1 MD02G1056000.v1.1 MD02G1063200.v1.1 MD07G1238100.v1.1
pyrus_communis	pycom02g02120 pycom02g03460 pycom02g03680 pycom02g03700 pycom02g03740 pycom02g04500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AccII	CGCG	1 cut(s)	246
AclI	AACGTT	1 cut(s)	507
AclWI	GGATC	2 cut(s)	50, 394
AcoI	YGGCCR	2 cut(s)	214, 321
AcsI	RAATTY	3 cut(s)	205, 411, 468
AflIII	ACRYGT	2 cut(s)	28, 64
AgsI	TTSAA	4 cut(s)	227, 356, 378, 490
AluBI	AGCT	4 cut(s)	92, 200, 256, 446
AluI	AGCT	4 cut(s)	92, 200, 256, 446
AlwI	GGATC	2 cut(s)	50, 394
AlwNI	CAGNNNCTG	1 cut(s)	200
AoxI	GGCC	2 cut(s)	214, 321
ApeKI	GCWGC	2 cut(s)	200, 446
ApoI	RAATTY	3 cut(s)	205, 411, 468
AspLEI	GCGC	1 cut(s)	246
AsuC2I	CCSGG	1 cut(s)	21
BalI	TGGCCA	2 cut(s)	216, 323
BbvI	GCAGC	2 cut(s)	187, 433
BccI	CCATC	1 cut(s)	415
BcnI	CCSGG	1 cut(s)	21
BfaI	CTAG	1 cut(s)	156
BglII	AGATCT	1 cut(s)	520
BisI	GCNGC	2 cut(s)	201, 447
BlsI	GCNGC	2 cut(s)	202, 448
Bme1390I	CCNGG	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	21
BmrI	ACTGGG	1 cut(s)	326
BmsI	GCATC	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	326
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
BpuEI	CTTGAG	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	332
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	2 cut(s)	120, 426
BseNI	ACTGG	1 cut(s)	332
BseXI	GCAGC	2 cut(s)	187, 433
BsgI	GTGCAG	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	246
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	2 cut(s)	216, 323
BsiEI	CGRYCG	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	351
BsnI	GGCC	2 cut(s)	216, 323
Bsp143I	GATC	4 cut(s)	55, 300, 386, 520
BspANI	GGCC	2 cut(s)	216, 323
BspFNI	CGCG	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	475
BspPI	GGATC	2 cut(s)	50, 394
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	4 cut(s)	55, 300, 386, 520
Bst6I	CTCTTC	1 cut(s)	108
BstF5I	GGATG	2 cut(s)	120, 426
BstFNI	CGCG	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	4 cut(s)	58, 303, 389, 523
BstMBI	GATC	4 cut(s)	55, 300, 386, 520
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNSI	RCATGY	2 cut(s)	32, 68
BstSCI	CCNGG	1 cut(s)	19
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	187, 433
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	216, 323
BtsCI	GGATG	2 cut(s)	120, 426
BtsI	GCAGTG	1 cut(s)	182
BtsIMutI	CAGTG	2 cut(s)	182, 231
CaiI	CAGNNNCTG	1 cut(s)	200
CciI	TCATGA	1 cut(s)	475
CfoI	GCGC	1 cut(s)	246
CviAII	CATG	5 cut(s)	29, 50, 65, 403, 476
CviJI	RGCY	9 cut(s)	92, 188, 200, 216, 256, 295, 323, 446, 455
CviKI_1	RGCY	9 cut(s)	92, 188, 200, 216, 256, 295, 323, 446, 455
DpnI	GATC	4 cut(s)	57, 302, 388, 522
DpnII	GATC	4 cut(s)	55, 300, 386, 520
EaeI	YGGCCR	2 cut(s)	214, 321
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco32I	GATATC	1 cut(s)	361
EcoRV	GATATC	1 cut(s)	361
FaeI	CATG	5 cut(s)	32, 53, 68, 406, 479
FaiI	YATR	8 cut(s)	30, 51, 66, 343, 345, 404, 462, 477
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	5 cut(s)	28, 49, 64, 402, 475
Fnu4HI	GCNGC	2 cut(s)	201, 447
FokI	GGATG	2 cut(s)	107, 433
Fsp4HI	GCNGC	2 cut(s)	201, 447
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	2 cut(s)	201, 447
HaeIII	GGCC	2 cut(s)	216, 323
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	5 cut(s)	32, 53, 68, 406, 479
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	254
HpaII	CCGG	1 cut(s)	20
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	3 cut(s)	105, 300, 391
Hpy188III	TCNNGA	3 cut(s)	286, 356, 476
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	1 cut(s)	69
HpyCH4IV	ACGT	2 cut(s)	148, 507
HpyCH4V	TGCA	3 cut(s)	9, 203, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpySE526I	ACGT	2 cut(s)	148, 507
Hsp92II	CATG	5 cut(s)	32, 53, 68, 406, 479
HspAI	GCGC	1 cut(s)	244
Kzo9I	GATC	4 cut(s)	55, 300, 386, 520
LpnPI	CCDG	5 cut(s)	33, 198, 345, 369, 509
Lsp1109I	GCAGC	2 cut(s)	187, 433
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	2 cut(s)	148, 507
MalI	GATC	4 cut(s)	57, 302, 388, 522
MboI	GATC	4 cut(s)	55, 300, 386, 520
MboII	GAAGA	5 cut(s)	95, 125, 140, 215, 320
MflI	RGATCY	1 cut(s)	520
MlsI	TGGCCA	2 cut(s)	216, 323
MluCI	AATT	6 cut(s)	205, 267, 311, 411, 468, 485
MluNI	TGGCCA	2 cut(s)	216, 323
MmeI	TCCRAC	2 cut(s)	316, 388
MnlI	CCTC	1 cut(s)	109
Mox20I	TGGCCA	2 cut(s)	216, 323
MscI	TGGCCA	2 cut(s)	216, 323
Msp20I	TGGCCA	2 cut(s)	216, 323
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	351
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	452
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	4 cut(s)	55, 300, 386, 520
NlaIII	CATG	5 cut(s)	32, 53, 68, 406, 479
NspI	RCATGY	2 cut(s)	32, 68
PagI	TCATGA	1 cut(s)	475
PciI	ACATGT	2 cut(s)	28, 64
PctI	GAATGC	1 cut(s)	351
PkrI	GCNGC	2 cut(s)	202, 448
Ple19I	CGATCG	1 cut(s)	303
PscI	ACATGT	2 cut(s)	28, 64
PsiI	TTATAA	1 cut(s)	462
Psp1406I	AACGTT	1 cut(s)	507
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	520
PvuI	CGATCG	1 cut(s)	303
PvuII	CAGCTG	1 cut(s)	446
SatI	GCNGC	2 cut(s)	201, 447
Sau3AI	GATC	4 cut(s)	55, 300, 386, 520
ScrFI	CCNGG	1 cut(s)	21
SetI	ASST	6 cut(s)	94, 151, 202, 258, 448, 510
SfaNI	GCATC	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
Sse9I	AATT	6 cut(s)	205, 267, 311, 411, 468, 485
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	19
TaiI	ACGT	2 cut(s)	151, 510
TasI	AATT	6 cut(s)	205, 267, 311, 411, 468, 485
TscAI	CASTG	2 cut(s)	182, 238
TseI	GCWGC	2 cut(s)	200, 446
TspDTI	ATGAA	2 cut(s)	96, 461
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	2 cut(s)	182, 238
XapI	RAATTY	3 cut(s)	205, 411, 468
XceI	RCATGY	2 cut(s)	32, 68
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.