Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0013733

Physical Location & Seq

Genomic Coordinates Reverse (-)

4219483 .. 4221488

Gene Structure 2006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1051400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAGTGCAGAGACAAACTGGGGCGACATGTTTTGCCAATATTCTATCATGTTGATCCTTCACATGTCAGGAAGCAGAACGGAGTTTTAGCCCAAGCGTTTAAGAAGCACAAACAAGACATCCGTGAAGAAAAAGATGACAAGGAACGTGAAGATAAACGAGAAAGGGTAAAGCAGTGGAGAAAGGCTCTTACAACAGCTGCAAAGTTGGCCGAAGAATTTCAGAAGCACAAAGAAGGCATCGGTGAAGAAAAGGATGACAAGAAACGTGAAGCTAAACAAGGGGTAAAGCAGTGGGGAGAGGCTCTTACAAAAGCTGCAAATTTGTCTGGCCACCATCTTCAAATCACTGATAATAGGTGCGAAGCACAGCTGATTAGAGAAATTGTTGATAAGATTATTCCGGAATGGCTTCTAAGCACAAACAAATTACATGTGGCCAAGCACCCGGTTGGAATCAATTCTCGCGTTCAAGATATTATCAGTTATCTTTCAAGTGGTGGATCAGAAGTTCGCATGGTTGGAATTTGGGGGATGGGCGGATTGGGTAAAACAACAGCTGCCAAAGCCATTTATAACCAAATTCATCATAAGTTCCAATTCAAAAGCTTCCTTGCCAACGTTAGTGAATATGATCTGGCTGATTTGCAAGGCAAACTTGTTTCTGACATCTTGAAACGGAACAAGTCTAAGATAACCAGTGTTGATGAAGGTATCAGTCTGATAAAAAATCATCTCCAACGTAGAAGCGTACTTGTCATTATTGACAATGTAGACAAAGTGGAACAACTAAATGCAATAGCTGGAAATCGTGATTGGTTTGGCCCAGGAAGTAGAATTATCATAACGACACGAGATGAACGTTTACTAAAGCAAGTGAACATGAAAGTGGACAAGACATATCCACTTAAGGAAATGAATGAAGAAGAAGCTCTGAAGCTCTTTAGTTGGCATGCCTTTGGAAATAGTAGGCCTAATGAAGGATATCTTGAACTCTCAAAAGAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

337

Amino Acids

38.56

Weight (kDa)

9.38

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	1 - 76	3.6e-11	TIR domain
NB-ARC	PF00931	156 - 322	8.8e-21	NB-ARC domain
AAA_22	PF13401	175 - 265	9.2e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013733)

Species	Orthologous Gene IDs
malus_domestica	MD00G1026000.v1.1 MD00G1027900.v1.1 MD02G1023600.v1.1 MD02G1028400.v1.1 MD02G1038400.v1.1 MD02G1050400.v1.1 MD02G1051400.v1.1 MD02G1052300.v1.1 MD02G1054500.v1.1 MD02G1056000.v1.1 MD02G1063200.v1.1 MD07G1238100.v1.1
pyrus_communis	pycom02g02120 pycom02g03460 pycom02g03680 pycom02g03700 pycom02g03740 pycom02g04500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	576
AccI	GTMKAC	1 cut(s)	774
AccII	CGCG	1 cut(s)	468
AccIII	TCCGGA	1 cut(s)	403
AciI	CCGC	1 cut(s)	540
AclI	AACGTT	2 cut(s)	621, 862
AclWI	GGATC	2 cut(s)	50, 511
AcoI	YGGCCR	3 cut(s)	210, 331, 438
AcsI	RAATTY	4 cut(s)	218, 322, 525, 582
AcuI	CTGAAG	1 cut(s)	956
AfaI	GTAC	1 cut(s)	753
AfiI	CCNNNNNNNGG	1 cut(s)	980
AflII	CTTAAG	1 cut(s)	908
AflIII	ACRYGT	3 cut(s)	28, 64, 433
AgsI	TTSAA	6 cut(s)	344, 473, 495, 604, 676, 992
AjnI	CCWGG	1 cut(s)	826
AjuI	GAANNNNNNNTTGG	2 cut(s)	799, 831
AloI	GAACNNNNNNTCC	2 cut(s)	495, 527
AluBI	AGCT	9 cut(s)	200, 275, 317, 373, 560, 609, 803, 932, 940
AluI	AGCT	9 cut(s)	200, 275, 317, 373, 560, 609, 803, 932, 940
Alw26I	GTCTC	1 cut(s)	6
AlwI	GGATC	2 cut(s)	50, 511
Aor13HI	TCCGGA	1 cut(s)	403
AoxI	GGCC	5 cut(s)	210, 331, 438, 823, 971
ApeKI	GCWGC	3 cut(s)	200, 317, 560
ApoI	RAATTY	4 cut(s)	218, 322, 525, 582
Asp700I	GAANNNNTTC	3 cut(s)	219, 411, 460
AspS9I	GGNCC	1 cut(s)	824
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	1 cut(s)	257
BalI	TGGCCA	2 cut(s)	333, 440
BauI	CACGAG	1 cut(s)	852
BbvI	GCAGC	3 cut(s)	187, 304, 547
BccI	CCATC	2 cut(s)	345, 529
BciT130I	CCWGG	1 cut(s)	828
BcnI	CCSGG	1 cut(s)	449
BcoDI	GTCTC	1 cut(s)	6
BfrI	CTTAAG	1 cut(s)	908
BisI	GCNGC	3 cut(s)	201, 318, 561
BlsI	GCNGC	3 cut(s)	202, 319, 562
Bme1390I	CCNGG	2 cut(s)	449, 828
BmgT120I	GGNCC	1 cut(s)	824
BmrFI	CCNGG	2 cut(s)	449, 828
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	249
BmuI	ACTGGG	1 cut(s)	29
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
BpuMI	CCSGG	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	826
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	980
Bse1I	ACTGG	2 cut(s)	24, 699
BseAI	TCCGGA	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	828
BseDI	CCNNGG	1 cut(s)	826
BseGI	GGATG	3 cut(s)	120, 262, 540
BseLI	CCNNNNNNNGG	1 cut(s)	980
BseNI	ACTGG	2 cut(s)	24, 699
BseXI	GCAGC	3 cut(s)	187, 304, 547
BsgI	GTGCAG	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	5 cut(s)	212, 333, 440, 825, 973
BsiSI	CCGG	2 cut(s)	404, 449
BslI	CCNNNNNNNGG	1 cut(s)	980
BsmAI	GTCTC	1 cut(s)	6
BsnI	GGCC	5 cut(s)	212, 333, 440, 825, 973
Bsp13I	TCCGGA	1 cut(s)	403
Bsp143I	GATC	3 cut(s)	55, 503, 634
BspACI	CCGC	1 cut(s)	540
BspANI	GGCC	5 cut(s)	212, 333, 440, 825, 973
BspEI	TCCGGA	1 cut(s)	403
BspFNI	CGCG	1 cut(s)	468
BspPI	GGATC	2 cut(s)	50, 511
BspTI	CTTAAG	1 cut(s)	908
BsrI	ACTGG	2 cut(s)	24, 699
BssECI	CCNNGG	1 cut(s)	826
BssMI	GATC	3 cut(s)	55, 503, 634
BssSI	CACGAG	1 cut(s)	852
Bst2BI	CACGAG	1 cut(s)	852
Bst2UI	CCWGG	1 cut(s)	828
BstAFI	CTTAAG	1 cut(s)	908
BstC8I	GCNNGC	1 cut(s)	954
BstDEI	CTNAG	2 cut(s)	416, 690
BstENI	CCTNNNNNAGG	1 cut(s)	978
BstF5I	GGATG	3 cut(s)	120, 262, 540
BstFNI	CGCG	1 cut(s)	468
BstKTI	GATC	3 cut(s)	58, 506, 637
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	3 cut(s)	55, 503, 634
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 566
BstNI	CCWGG	1 cut(s)	828
BstNSI	RCATGY	4 cut(s)	32, 68, 437, 956
BstSCI	CCNGG	2 cut(s)	447, 826
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	3 cut(s)	187, 304, 547
BsuRI	GGCC	5 cut(s)	212, 333, 440, 825, 973
BtsCI	GGATG	3 cut(s)	120, 262, 540
BtsI	GCAGTG	2 cut(s)	182, 299
BtsIMutI	CAGTG	4 cut(s)	182, 299, 348, 706
Cac8I	GCNNGC	1 cut(s)	954
Cfr13I	GGNCC	1 cut(s)	824
Csp6I	GTAC	1 cut(s)	752
CviAII	CATG	7 cut(s)	29, 50, 65, 434, 517, 883, 953
CviQI	GTAC	1 cut(s)	752
DdeI	CTNAG	2 cut(s)	416, 690
DpnI	GATC	3 cut(s)	57, 505, 636
DpnII	GATC	3 cut(s)	55, 503, 634
EaeI	YGGCCR	3 cut(s)	210, 331, 438
EciI	GGCGGA	1 cut(s)	555
Eco147I	AGGCCT	1 cut(s)	973
Eco32I	GATATC	1 cut(s)	986
Eco57I	CTGAAG	1 cut(s)	956
EcoNI	CCTNNNNNAGG	1 cut(s)	978
EcoRII	CCWGG	1 cut(s)	826
EcoRV	GATATC	1 cut(s)	986
FaeI	CATG	7 cut(s)	32, 53, 68, 437, 520, 886, 956
FalI	AAGNNNNNCTT	4 cut(s)	642, 674, 972, 1004
FatI	CATG	7 cut(s)	28, 49, 64, 433, 516, 882, 952
FblI	GTMKAC	1 cut(s)	774
Fnu4HI	GCNGC	3 cut(s)	201, 318, 561
FokI	GGATG	3 cut(s)	107, 269, 547
Fsp4HI	GCNGC	3 cut(s)	201, 318, 561
GluI	GCNGC	3 cut(s)	201, 318, 561
HaeIII	GGCC	5 cut(s)	212, 333, 440, 825, 973
HapII	CCGG	2 cut(s)	404, 449
Hin1II	CATG	7 cut(s)	32, 53, 68, 437, 520, 886, 956
HindIII	AAGCTT	1 cut(s)	607
HinfI	GANTC	1 cut(s)	456
HpaII	CCGG	2 cut(s)	404, 449
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	4 cut(s)	775, 866, 880, 892
Hpy188I	TCNGA	5 cut(s)	225, 508, 667, 723, 936
Hpy188III	TCNNGA	6 cut(s)	70, 404, 473, 673, 812, 989
Hpy8I	GTNNAC	4 cut(s)	775, 866, 880, 892
HpyAV	CCTTC	4 cut(s)	69, 230, 704, 974
HpyCH4IV	ACGT	5 cut(s)	148, 268, 621, 742, 862
HpyCH4V	TGCA	5 cut(s)	9, 203, 320, 649, 797
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 566
HpyF3I	CTNAG	2 cut(s)	416, 690
HpySE526I	ACGT	5 cut(s)	148, 268, 621, 742, 862
Hsp92II	CATG	7 cut(s)	32, 53, 68, 437, 520, 886, 956
Kpn2I	TCCGGA	1 cut(s)	403
Kzo9I	GATC	3 cut(s)	55, 503, 634
Lsp1109I	GCAGC	3 cut(s)	187, 304, 547
LweI	GCATC	1 cut(s)	249
MaeII	ACGT	5 cut(s)	148, 268, 621, 742, 862
MalI	GATC	3 cut(s)	57, 505, 636
MboI	GATC	3 cut(s)	55, 503, 634
MboII	GAAGA	7 cut(s)	140, 164, 227, 260, 332, 935, 938
MlsI	TGGCCA	2 cut(s)	333, 440
MluCI	AATT	9 cut(s)	218, 322, 384, 428, 460, 525, 582, 599, 837
MluNI	TGGCCA	2 cut(s)	333, 440
MmeI	TCCRAC	3 cut(s)	433, 502, 763
MnlI	CCTC	1 cut(s)	295
Mox20I	TGGCCA	2 cut(s)	333, 440
MroI	TCCGGA	1 cut(s)	403
MroXI	GAANNNNTTC	3 cut(s)	219, 411, 460
MscI	TGGCCA	2 cut(s)	333, 440
MseI	TTAA	2 cut(s)	102, 909
MslI	CAYNNNNRTG	1 cut(s)	887
Msp20I	TGGCCA	2 cut(s)	333, 440
MspA1I	CMGCKG	3 cut(s)	200, 373, 560
MspCI	CTTAAG	1 cut(s)	908
MspI	CCGG	2 cut(s)	404, 449
MspR9I	CCNGG	2 cut(s)	449, 828
MvaI	CCWGG	1 cut(s)	828
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	2 cut(s)	209, 566
NciI	CCSGG	1 cut(s)	449
NdeII	GATC	3 cut(s)	55, 503, 634
NlaIII	CATG	7 cut(s)	32, 53, 68, 437, 520, 886, 956
NspI	RCATGY	4 cut(s)	32, 68, 437, 956
PaeI	GCATGC	1 cut(s)	956
PceI	AGGCCT	1 cut(s)	973
PciI	ACATGT	3 cut(s)	28, 64, 433
PcsI	WCGNNNNNNNCGW	1 cut(s)	859
PdmI	GAANNNNTTC	3 cut(s)	219, 411, 460
PfeI	GAWTC	1 cut(s)	456
PkrI	GCNGC	3 cut(s)	202, 319, 562
PscI	ACATGT	3 cut(s)	28, 64, 433
PsiI	TTATAA	1 cut(s)	576
Psp1406I	AACGTT	2 cut(s)	621, 862
Psp6I	CCWGG	1 cut(s)	826
PspGI	CCWGG	1 cut(s)	826
PspPI	GGNCC	1 cut(s)	824
PvuII	CAGCTG	3 cut(s)	200, 373, 560
RsaI	GTAC	1 cut(s)	753
RsaNI	GTAC	1 cut(s)	752
RseI	CAYNNNNRTG	1 cut(s)	887
SaqAI	TTAA	2 cut(s)	102, 909
SatI	GCNGC	3 cut(s)	201, 318, 561
Sau3AI	GATC	3 cut(s)	55, 503, 634
Sau96I	GGNCC	1 cut(s)	824
ScrFI	CCNGG	2 cut(s)	449, 828
SfaNI	GCATC	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	887
SmlI	CTYRAG	1 cut(s)	908
SmoI	CTYRAG	1 cut(s)	908
SphI	GCATGC	1 cut(s)	956
Sse9I	AATT	9 cut(s)	218, 322, 384, 428, 460, 525, 582, 599, 837
SseBI	AGGCCT	1 cut(s)	973
SsiI	CCGC	1 cut(s)	540
SspI	AATATT	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	973
StyD4I	CCNGG	2 cut(s)	447, 826
TaiI	ACGT	5 cut(s)	151, 271, 624, 745, 865
TasI	AATT	9 cut(s)	218, 322, 384, 428, 460, 525, 582, 599, 837
TfiI	GAWTC	1 cut(s)	456
Tru1I	TTAA	2 cut(s)	102, 909
Tru9I	TTAA	2 cut(s)	102, 909
TscAI	CASTG	4 cut(s)	182, 299, 355, 706
TseI	GCWGC	3 cut(s)	200, 317, 560
TspDTI	ATGAA	7 cut(s)	575, 723, 873, 899, 932, 936, 993
TspGWI	ACGGA	3 cut(s)	96, 113, 694
TspRI	CASTG	4 cut(s)	182, 299, 355, 706
Vha464I	CTTAAG	1 cut(s)	908
XagI	CCTNNNNNAGG	1 cut(s)	978
XapI	RAATTY	4 cut(s)	218, 322, 525, 582
XceI	RCATGY	4 cut(s)	32, 68, 437, 956
XmiI	GTMKAC	1 cut(s)	774
XmnI	GAANNNNTTC	3 cut(s)	219, 411, 460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.