MD00G1048000.v1.1
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
9000616 .. 9000855
240 bp
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UTR
Exon/CDS
Intron
MD00G1048000.v1.1.491

Sequence Viewer

Length: 240 bp
ATGTTATATTTGGATCTTTCCCACAACAATCTTAGCGGTCCAATTCCAAAACAAGTCATCAATTTACTTGTTGCGTTGGATCTATCTAGAAACAAATTTACTGAATCCATTCCCATGGAAGTAGGTAACTTACAGCATCTTGTTTTCTTGGATGTTTCTGAAAACAAGTTATCTGGTGAGATTCCACAAAGCTTAGGGAGTTGCACAAGTTTGAGAAGTCTGTATCTGAGTGGGAACTGA

Protein Analysis

80

Amino Acids

8.68

Weight (kDa)

5.45

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 3 - 75 2.6e-07 Leucine-rich repeat region
LRR_8 PF13855 23 - 79 2.1e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 36
AclWI GGATC 2 cut(s) 21, 87
AcsI RAATTY 1 cut(s) 95
AluBI AGCT 1 cut(s) 192
AluI AGCT 1 cut(s) 192
AlwI GGATC 2 cut(s) 21, 87
ApoI RAATTY 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 188
AvaII GGWCC 1 cut(s) 38
BfaI CTAG 1 cut(s) 87
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 38
BmsI GCATC 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 218
Bsp143I GATC 2 cut(s) 13, 79
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 219
BspPI GGATC 2 cut(s) 21, 87
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 2 cut(s) 13, 79
BssT1I CCWWGG 1 cut(s) 114
BstDEI CTNAG 3 cut(s) 32, 193, 227
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 2 cut(s) 16, 82
BstMBI GATC 2 cut(s) 13, 79
BstX2I RGATCY 2 cut(s) 13, 79
BstXI CCANNNNNNTGG 1 cut(s) 115
BstYI RGATCY 2 cut(s) 13, 79
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 38
CviAII CATG 1 cut(s) 115
CviJI RGCY 1 cut(s) 192
CviKI_1 RGCY 1 cut(s) 192
DdeI CTNAG 3 cut(s) 32, 193, 227
DpnI GATC 2 cut(s) 15, 81
DpnII GATC 2 cut(s) 13, 79
Eco130I CCWWGG 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 118
FaiI YATR 2 cut(s) 7, 116
FatI CATG 1 cut(s) 114
FokI GGATG 1 cut(s) 164
FspBI CTAG 1 cut(s) 87
Hin1II CATG 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 2 cut(s) 104, 181
HphI GGTGA 1 cut(s) 188
Hpy188I TCNGA 2 cut(s) 160, 228
Hpy188III TCNNGA 1 cut(s) 87
HpyCH4V TGCA 1 cut(s) 204
HpyF3I CTNAG 3 cut(s) 32, 193, 227
Hsp92II CATG 1 cut(s) 118
Kzo9I GATC 2 cut(s) 13, 79
LpnPI CCDG 1 cut(s) 159
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 125
MalI GATC 2 cut(s) 15, 81
MboI GATC 2 cut(s) 13, 79
MflI RGATCY 2 cut(s) 13, 79
MluCI AATT 3 cut(s) 42, 61, 95
MmeI TCCRAC 1 cut(s) 57
MroXI GAANNNNTTC 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 113
NcoI CCATGG 1 cut(s) 114
NdeII GATC 2 cut(s) 13, 79
NlaIII CATG 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 2 cut(s) 104, 181
PspPI GGNCC 1 cut(s) 38
PsuI RGATCY 2 cut(s) 13, 79
RseI CAYNNNNRTG 1 cut(s) 113
Sau3AI GATC 2 cut(s) 13, 79
Sau96I GGNCC 1 cut(s) 38
SetI ASST 2 cut(s) 127, 194
SfaNI GCATC 1 cut(s) 145
SgeI CNNG 9 cut(s) 65, 80, 99, 127, 152, 160, 178, 186, 219
SinI GGWCC 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 3 cut(s) 42, 61, 95
SsiI CCGC 1 cut(s) 36
SspMI CTAG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 114
TasI AATT 3 cut(s) 42, 61, 95
TfiI GAWTC 2 cut(s) 104, 181
VpaK11BI GGWCC 1 cut(s) 38
XapI RAATTY 1 cut(s) 95
XbaI TCTAGA 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.