Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013734

Physical Location & Seq

Genomic Coordinates Reverse (-)

8151083 .. 8152007

Gene Structure 925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00287100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGATATATCAGACAATAAGCTTAGTGGAGATATACCATCACAGGCCATTGGTCTGTCCTCCTCTGTCTTGCTCAACTTATCGCAAAACTCGCTAACTGGCATTTTGCCTGTGGAAGTGGGGAACCACTTTCAAGGAATCATTCCTTCTTCTTTGGCTGCTTTGAGAGGTCTTCAGTATCTAGATCTTTCACGAAACAACTTGTCAGGACATATTCCAAAAGACCTACAGAGGCTTCCATTCTTGATCCATTTGAACCTCTCGTTCAATAATTTGGAGGGTGAGACACTTCACCAAGCTACTGATGGATTCTCTCCGAGCAATCAAATTGGCTCAGGTGGTTTTGGCTCTGTATACAAAGGGATTCTTGATCAAGAAGAAAACAAAATTGTTGCCATAAAGGTCCTTAACCTTCAACAGAAAGGAGCTTCCAAGGGGTTTTGTGGCGGAATGCAATGCACTGGGAAATATCTGACACAGAAATCTTGTGAAGATCTTAACATATTGCTCCAGCACGGATTACAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

176

Amino Acids

18.97

Weight (kDa)

6.17

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	41 - 92	2.5e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013734)

Species	Orthologous Gene IDs
malus_domestica	MD00G1048000.v1.1 MD01G1112000.v1.1 MD02G1223600.v1.1 MD02G1224200.v1.1 MD07G1090100.v1.1
pyrus_communis	pycom01g12160
rosa_chinensis	RchiOBHm_Chr1g0344191 RchiOBHm_Chr1g0369871 RchiOBHm_Chr4g0404351 RchiOBHm_Chr7g0203471
rosa_multiflora	Rmu_sc0000019.1_g000003 Rmu_ssc0000434.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253800 Rroxscaffold_4G00286950 Rroxscaffold_4G00287100
rosa_rugosa	Rorug01G0352900 Rorug04G0040900 Rorug07G0076100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	1 cut(s)	447
AclWI	GGATC	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	158
AgsI	TTSAA	4 cut(s)	134, 256, 268, 416
AluBI	AGCT	3 cut(s)	22, 299, 428
AluI	AGCT	3 cut(s)	22, 299, 428
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	1 cut(s)	241
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	403
AsuHPI	GGTGA	2 cut(s)	284, 293
AvaII	GGWCC	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	2 cut(s)	46, 299
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	227
BglII	AGATCT	2 cut(s)	184, 493
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	1 cut(s)	125
BmrI	ACTGGG	1 cut(s)	471
BmuI	ACTGGG	1 cut(s)	471
BpiI	GAAGAC	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	494
Bpu10I	CCTNAGC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	432
Bse1I	ACTGG	2 cut(s)	103, 466
Bse3DI	GCAATG	1 cut(s)	461
BseDI	CCNNGG	1 cut(s)	432
BseMI	GCAATG	1 cut(s)	461
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	2 cut(s)	103, 466
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	1 cut(s)	47
BsmAI	GTCTC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	456
BsnI	GGCC	1 cut(s)	47
Bsp143I	GATC	4 cut(s)	184, 246, 370, 493
BspACI	CCGC	1 cut(s)	447
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	347
BspLI	GGNNCC	1 cut(s)	125
BspPI	GGATC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	461
BsrI	ACTGG	2 cut(s)	103, 466
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	4 cut(s)	184, 246, 370, 493
BssNAI	GTATAC	1 cut(s)	355
BssT1I	CCWWGG	1 cut(s)	432
Bst1107I	GTATAC	1 cut(s)	355
BstDEI	CTNAG	2 cut(s)	23, 334
BstKTI	GATC	4 cut(s)	187, 249, 373, 496
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	4 cut(s)	184, 246, 370, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	164
BstX2I	RGATCY	2 cut(s)	184, 493
BstYI	RGATCY	2 cut(s)	184, 493
BstZ17I	GTATAC	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	459
Cfr13I	GGNCC	1 cut(s)	403
CviJI	RGCY	8 cut(s)	22, 47, 158, 235, 299, 333, 348, 428
CviKI_1	RGCY	8 cut(s)	22, 47, 158, 235, 299, 333, 348, 428
DdeI	CTNAG	2 cut(s)	23, 334
DpnI	GATC	4 cut(s)	186, 248, 372, 495
DpnII	GATC	4 cut(s)	184, 246, 370, 493
EciI	GGCGGA	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
FaiI	YATR	6 cut(s)	8, 35, 213, 355, 398, 503
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FbaI	TGATCA	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	494
HaeIII	GGCC	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	3 cut(s)	138, 309, 364
HphI	GGTGA	2 cut(s)	284, 293
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	3 cut(s)	13, 318, 474
Hpy188III	TCNNGA	6 cut(s)	182, 192, 207, 244, 368, 374
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	2 cut(s)	156, 422
HpyCH4V	TGCA	2 cut(s)	454, 459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpyF3I	CTNAG	2 cut(s)	23, 334
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	4 cut(s)	184, 246, 370, 493
LmnI	GCTCC	2 cut(s)	425, 513
LpnPI	CCDG	7 cut(s)	29, 84, 123, 192, 321, 447, 524
Lsp1109I	GCAGC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	182
MalI	GATC	4 cut(s)	186, 248, 372, 495
MboI	GATC	4 cut(s)	184, 246, 370, 493
MboII	GAAGA	4 cut(s)	141, 164, 389, 503
MflI	RGATCY	2 cut(s)	184, 493
MluCI	AATT	3 cut(s)	271, 327, 387
MnlI	CCTC	6 cut(s)	70, 73, 161, 225, 269, 271
MseI	TTAA	2 cut(s)	408, 498
Mva1269I	GAATGC	1 cut(s)	456
MwoI	GCNNNNNNNGC	1 cut(s)	91
NdeII	GATC	4 cut(s)	184, 246, 370, 493
NlaIV	GGNNCC	1 cut(s)	125
PctI	GAATGC	1 cut(s)	456
PfeI	GAWTC	3 cut(s)	138, 309, 364
PkrI	GCNGC	1 cut(s)	160
PpuMI	RGGWCCY	1 cut(s)	403
Psp5II	RGGWCCY	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	403
PspPPI	RGGWCCY	1 cut(s)	403
PsuI	RGATCY	2 cut(s)	184, 493
SaqAI	TTAA	2 cut(s)	408, 498
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	4 cut(s)	184, 246, 370, 493
Sau96I	GGNCC	1 cut(s)	403
SetI	ASST	9 cut(s)	24, 172, 228, 261, 301, 340, 405, 414, 430
SfcI	CTRYAG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	403
Sse9I	AATT	3 cut(s)	271, 327, 387
SsiI	CCGC	1 cut(s)	447
SspMI	CTAG	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	432
TasI	AATT	3 cut(s)	271, 327, 387
TfiI	GAWTC	3 cut(s)	138, 309, 364
Tru1I	TTAA	2 cut(s)	408, 498
Tru9I	TTAA	2 cut(s)	408, 498
TscAI	CASTG	1 cut(s)	466
TseI	GCWGC	1 cut(s)	158
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	403
XbaI	TCTAGA	1 cut(s)	181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.