Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013734

Physical Location & Seq

Genomic Coordinates Reverse (-)

9362435 .. 9362987

Gene Structure 553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1090100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGCAGTTTTGGGTCCGTTTACAAAGGAGTACTTGAGCAAGGTGAAACTACAGTTGACAACAAGGTACTCAACCTCGTTCGTCACGGAGCTTACAAAAGTTTTATTGTTGAGTGTGAGGCTTTCAAAAATATTAGACACCGTAATCTTGTCGAGGTACTCTCGGCATGTTTTGGTTTTGATTATCGCAGTCACGACTTCAAGGCCTTAATTTATAAGTTCATGGTTAACGAGAGCTTGGAGGAATGGTTGTATCCAATTCATACAATTGGTGAGACAAATGAGAGGCCAAGGAGCTTAACAATTTCTCAAAGGTTGAATATTGTTATTGATATGCCAATAGTTCATTGCGACCTCAAACCCAACAATATTCTTCTCAATGAGGACATGATTGCACATGTAGGTGACTTCGGGTTGGTGAGGTTCCTACCAAGAGCTGCTGAAAATTCTTCAGGAAAGGAATCGAGTTCTTTAGGGATCATTTTTTTTTCATCCCAGAGTGGTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

170

Amino Acids

19.09

Weight (kDa)

6.06

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 148	1.9e-18	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	2 - 151	4e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013734)

Species	Orthologous Gene IDs
malus_domestica	MD00G1048000.v1.1 MD01G1112000.v1.1 MD02G1223600.v1.1 MD02G1224200.v1.1 MD07G1090100.v1.1
pyrus_communis	pycom01g12160
rosa_chinensis	RchiOBHm_Chr1g0344191 RchiOBHm_Chr1g0369871 RchiOBHm_Chr4g0404351 RchiOBHm_Chr7g0203471
rosa_multiflora	Rmu_sc0000019.1_g000003 Rmu_ssc0000434.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253800 Rroxscaffold_4G00286950 Rroxscaffold_4G00287100
rosa_rugosa	Rorug01G0352900 Rorug04G0040900 Rorug07G0076100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
Acc65I	GGTACC	1 cut(s)	503
AccB1I	GGYRCC	1 cut(s)	503
AclWI	GGATC	1 cut(s)	485
AcsI	RAATTY	1 cut(s)	445
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	4 cut(s)	33, 69, 159, 505
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	3 cut(s)	127, 202, 319
AluBI	AGCT	4 cut(s)	92, 237, 297, 437
AluI	AGCT	4 cut(s)	92, 237, 297, 437
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	485
AoxI	GGCC	2 cut(s)	204, 287
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	1 cut(s)	445
Asp718I	GGTACC	1 cut(s)	503
AspS9I	GGNCC	1 cut(s)	15
AsuHPI	GGTGA	4 cut(s)	56, 284, 416, 430
AvaII	GGWCC	1 cut(s)	15
BanI	GGYRCC	1 cut(s)	503
BbvI	GCAGC	1 cut(s)	424
BciVI	GTATCC	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	264
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
BmcAI	AGTACT	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	15
BmiI	GGNNCC	3 cut(s)	16, 425, 505
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpuEI	CTTGAG	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	290
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bse3DI	GCAATG	1 cut(s)	346
BseDI	CCNNGG	1 cut(s)	290
BseGI	GGATG	1 cut(s)	491
BseMI	GCAATG	1 cut(s)	346
BseXI	GCAGC	1 cut(s)	424
BshFI	GGCC	2 cut(s)	206, 289
BshNI	GGYRCC	1 cut(s)	503
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	206, 289
Bsp143I	GATC	1 cut(s)	477
BspANI	GGCC	2 cut(s)	206, 289
BspLI	GGNNCC	3 cut(s)	16, 425, 505
BspPI	GGATC	1 cut(s)	485
BspT107I	GGYRCC	1 cut(s)	503
BsrDI	GCAATG	1 cut(s)	346
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	1 cut(s)	477
BssT1I	CCWWGG	1 cut(s)	290
Bst4CI	ACNGT	2 cut(s)	55, 143
BstF5I	GGATG	1 cut(s)	491
BstKTI	GATC	1 cut(s)	480
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	477
BstNSI	RCATGY	2 cut(s)	171, 401
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	424
BsuI	GTATCC	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	206, 289
BtsCI	GGATG	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	15
Csp6I	GTAC	4 cut(s)	32, 68, 158, 504
CviAII	CATG	4 cut(s)	168, 223, 388, 398
CviJI	RGCY	7 cut(s)	92, 122, 206, 237, 289, 297, 437
CviKI_1	RGCY	7 cut(s)	92, 122, 206, 237, 289, 297, 437
CviQI	GTAC	4 cut(s)	32, 68, 158, 504
DpnI	GATC	1 cut(s)	479
DpnII	GATC	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	290
Eco147I	AGGCCT	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	435
EcoT14I	CCWWGG	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	4 cut(s)	171, 226, 391, 401
FaiI	YATR	7 cut(s)	169, 216, 224, 264, 335, 389, 399
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FatI	CATG	4 cut(s)	167, 222, 387, 397
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	1 cut(s)	478
Fsp4HI	GCNGC	1 cut(s)	438
GluI	GCNGC	1 cut(s)	438
HaeIII	GGCC	2 cut(s)	206, 289
Hin1II	CATG	4 cut(s)	171, 226, 391, 401
HincII	GTYRAC	2 cut(s)	58, 229
HindII	GTYRAC	2 cut(s)	58, 229
HinfI	GANTC	1 cut(s)	461
HpaI	GTTAAC	1 cut(s)	229
HphI	GGTGA	4 cut(s)	56, 284, 416, 430
Hpy166II	GTNNAC	3 cut(s)	22, 58, 229
Hpy188III	TCNNGA	2 cut(s)	194, 453
Hpy8I	GTNNAC	3 cut(s)	22, 58, 229
HpyCH4III	ACNGT	2 cut(s)	55, 143
HpyCH4V	TGCA	1 cut(s)	395
Hsp92II	CATG	4 cut(s)	171, 226, 391, 401
KpnI	GGTACC	1 cut(s)	507
KspAI	GTTAAC	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	477
LmnI	GCTCC	2 cut(s)	89, 294
LpnPI	CCDG	1 cut(s)	438
Lsp1109I	GCAGC	1 cut(s)	424
MaeIII	GTNAC	3 cut(s)	83, 191, 404
MalI	GATC	1 cut(s)	479
MboI	GATC	1 cut(s)	477
MboII	GAAGA	2 cut(s)	365, 441
MfeI	CAATTG	1 cut(s)	267
MluCI	AATT	5 cut(s)	210, 258, 267, 303, 445
MnlI	CCTC	8 cut(s)	86, 112, 148, 235, 279, 365, 376, 414
MseI	TTAA	3 cut(s)	209, 228, 299
MslI	CAYNNNNRTG	1 cut(s)	402
MunI	CAATTG	1 cut(s)	267
NdeII	GATC	1 cut(s)	477
NlaIII	CATG	4 cut(s)	171, 226, 391, 401
NlaIV	GGNNCC	3 cut(s)	16, 425, 505
NmeAIII	GCCGAG	1 cut(s)	143
NmuCI	GTSAC	3 cut(s)	83, 191, 404
NspI	RCATGY	2 cut(s)	171, 401
PceI	AGGCCT	1 cut(s)	206
PciI	ACATGT	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	461
PkrI	GCNGC	1 cut(s)	439
PscI	ACATGT	1 cut(s)	397
PsiI	TTATAA	1 cut(s)	216
PspN4I	GGNNCC	3 cut(s)	16, 425, 505
PspPI	GGNCC	1 cut(s)	15
RsaI	GTAC	4 cut(s)	33, 69, 159, 505
RsaNI	GTAC	4 cut(s)	32, 68, 158, 504
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	3 cut(s)	209, 228, 299
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	1 cut(s)	477
Sau96I	GGNCC	1 cut(s)	15
ScaI	AGTACT	1 cut(s)	33
SfcI	CTRYAG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	15
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	5 cut(s)	210, 258, 267, 303, 445
SseBI	AGGCCT	1 cut(s)	206
SspI	AATATT	3 cut(s)	133, 322, 370
StuI	AGGCCT	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	2 cut(s)	55, 143
TaqI	TCGA	2 cut(s)	153, 464
TasI	AATT	5 cut(s)	210, 258, 267, 303, 445
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	3 cut(s)	209, 228, 299
Tru9I	TTAA	3 cut(s)	209, 228, 299
TseFI	GTSAC	3 cut(s)	83, 191, 404
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	3 cut(s)	83, 191, 404
TspDTI	ATGAA	4 cut(s)	211, 251, 335, 480
TspGWI	ACGGA	2 cut(s)	7, 102
VpaK11BI	GGWCC	1 cut(s)	15
XapI	RAATTY	1 cut(s)	445
XceI	RCATGY	2 cut(s)	171, 401
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.