Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000434.1

Orthogroup ID

OG0013734

Physical Location & Seq

Genomic Coordinates Forward (+)

11086 .. 11751

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000434.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atggtaccaacaaaaggaattttcaagaatgcaactgctacgtcagtcgaaggaaatagtaaactttgtgatggcatacctgaatttcaattgccgaggtgcaagtttccacatccaagaaggggagcattgaccaaaaccttgaaatggatgatctctctaatttgtggaattcttggagtcactttagcagtttctattttctacaattttgtcttacagagggaaaagaagcatcaaatttcccatgattcagaaaattttctccgggtttcttaccaaattcttctaaaagctaccaatggattctcttctgcaagcttggttggttcaggcagttttgggtctgtgtataaaggagtcctcgaccaaggagaaacaacaattgctgtcaaagtactcaacctcgttaatcgtggagcttccaaaagtttctttgccgagtgtgaggccttgagaaacattagacaccgtaatctgttgaaggtactttctgtatgttcaggtgttaactatcaaggtgatcatgatttcaaggccttgatttatgagttcatggttaatggcagcttagatgagtggttgcatccaactcaggcagttgctgagacgattgagagacctaggagtttgagttttttctcaaaggttaaacattgctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

221

Amino Acids

24.64

Weight (kDa)

9.42

Isoelectric Point (pI)

22.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013734)

Species	Orthologous Gene IDs
malus_domestica	MD00G1048000.v1.1 MD01G1112000.v1.1 MD02G1223600.v1.1 MD02G1224200.v1.1 MD07G1090100.v1.1
pyrus_communis	pycom01g12160
rosa_chinensis	RchiOBHm_Chr1g0344191 RchiOBHm_Chr1g0369871 RchiOBHm_Chr4g0404351 RchiOBHm_Chr7g0203471
rosa_multiflora	Rmu_sc0000019.1_g000003 Rmu_ssc0000434.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253800 Rroxscaffold_4G00286950 Rroxscaffold_4G00287100
rosa_rugosa	Rorug01G0352900 Rorug04G0040900 Rorug07G0076100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	1 cut(s)	4
AcsI	RAATTY	6 cut(s)	18, 83, 171, 240, 259, 282
AfaI	GTAC	3 cut(s)	6, 399, 489
AfiI	CCNNNNNNNGG	3 cut(s)	14, 122, 147
AgsI	TTSAA	5 cut(s)	25, 89, 145, 484, 535
AluBI	AGCT	4 cut(s)	296, 321, 422, 570
AluI	AGCT	4 cut(s)	296, 321, 422, 570
Alw26I	GTCTC	2 cut(s)	602, 613
AlwNI	CAGNNNCTG	1 cut(s)	605
AoxI	GGCC	2 cut(s)	450, 537
ApeKI	GCWGC	1 cut(s)	567
ApoI	RAATTY	6 cut(s)	18, 83, 171, 240, 259, 282
Asp700I	GAANNNNTTC	1 cut(s)	261
Asp718I	GGTACC	1 cut(s)	4
AspA2I	CCTAGG	1 cut(s)	623
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	533
AvrII	CCTAGG	1 cut(s)	623
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	579
BccI	CCATC	1 cut(s)	65
BclI	TGATCA	1 cut(s)	523
BcnI	CCSGG	1 cut(s)	269
BcoDI	GTCTC	2 cut(s)	602, 613
BfaI	CTAG	1 cut(s)	624
BisI	GCNGC	1 cut(s)	568
BlnI	CCTAGG	1 cut(s)	623
BlsI	GCNGC	1 cut(s)	569
BmcAI	AGTACT	1 cut(s)	399
Bme1390I	CCNGG	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	2 cut(s)	244, 595
BpuEI	CTTGAG	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	613
BsaJI	CCNNGG	3 cut(s)	95, 370, 623
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 122, 147
Bse3DI	GCAATG	1 cut(s)	655
BseDI	CCNNGG	3 cut(s)	95, 370, 623
BseGI	GGATG	3 cut(s)	112, 156, 586
BseLI	CCNNNNNNNGG	3 cut(s)	14, 122, 147
BseMI	GCAATG	1 cut(s)	655
BseMII	CTCAG	2 cut(s)	597, 608
BseXI	GCAGC	1 cut(s)	579
BshFI	GGCC	2 cut(s)	452, 539
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	268
BslI	CCNNNNNNNGG	3 cut(s)	14, 122, 147
BsmAI	GTCTC	2 cut(s)	602, 613
BsmBI	CGTCTC	1 cut(s)	602
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	452, 539
Bso31I	GGTCTC	1 cut(s)	613
Bsp143I	GATC	2 cut(s)	153, 523
BspANI	GGCC	2 cut(s)	452, 539
BspCNI	CTCAG	2 cut(s)	598, 607
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	613
BsrDI	GCAATG	1 cut(s)	655
BssECI	CCNNGG	3 cut(s)	95, 370, 623
BssMI	GATC	2 cut(s)	153, 523
BssT1I	CCWWGG	2 cut(s)	370, 623
Bst4CI	ACNGT	1 cut(s)	473
Bst6I	CTCTTC	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	3 cut(s)	571, 594, 606
BstF5I	GGATG	3 cut(s)	112, 156, 586
BstKTI	GATC	2 cut(s)	156, 526
BstMAI	GTCTC	2 cut(s)	602, 613
BstMBI	GATC	2 cut(s)	153, 523
BstSCI	CCNGG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	579
BsuRI	GGCC	2 cut(s)	452, 539
BtsCI	GGATG	3 cut(s)	112, 156, 586
Cac8I	GCNNGC	1 cut(s)	319
CaiI	CAGNNNCTG	1 cut(s)	605
CciI	TCATGA	1 cut(s)	526
Csp6I	GTAC	3 cut(s)	5, 398, 488
CviAII	CATG	3 cut(s)	248, 527, 556
CviJI	RGCY	6 cut(s)	296, 321, 422, 452, 539, 570
CviKI_1	RGCY	6 cut(s)	296, 321, 422, 452, 539, 570
CviQI	GTAC	3 cut(s)	5, 398, 488
DdeI	CTNAG	3 cut(s)	571, 594, 606
DpnI	GATC	2 cut(s)	155, 525
DpnII	GATC	2 cut(s)	153, 523
Eam1104I	CTCTTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	316
Eco130I	CCWWGG	2 cut(s)	370, 623
Eco147I	AGGCCT	2 cut(s)	452, 539
Eco31I	GGTCTC	1 cut(s)	613
EcoRI	GAATTC	1 cut(s)	171
EcoT14I	CCWWGG	2 cut(s)	370, 623
ErhI	CCWWGG	2 cut(s)	370, 623
Esp3I	CGTCTC	1 cut(s)	602
FaeI	CATG	3 cut(s)	251, 530, 559
FaiI	YATR	7 cut(s)	77, 249, 354, 499, 528, 549, 557
FatI	CATG	3 cut(s)	247, 526, 555
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	1 cut(s)	568
FokI	GGATG	3 cut(s)	99, 163, 573
Fsp4HI	GCNGC	1 cut(s)	568
FspBI	CTAG	1 cut(s)	624
GluI	GCNGC	1 cut(s)	568
HaeIII	GGCC	2 cut(s)	452, 539
HapII	CCGG	1 cut(s)	268
Hin1II	CATG	3 cut(s)	251, 530, 559
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HindIII	AAGCTT	1 cut(s)	319
HinfI	GANTC	4 cut(s)	180, 251, 306, 360
HpaI	GTTAAC	1 cut(s)	511
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	2 cut(s)	62, 511
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	2 cut(s)	25, 527
Hpy8I	GTNNAC	2 cut(s)	62, 511
HpyAV	CCTTC	3 cut(s)	44, 114, 478
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	4 cut(s)	32, 102, 317, 586
HpyF3I	CTNAG	3 cut(s)	571, 594, 606
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	251, 530, 559
KpnI	GGTACC	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	523
KspAI	GTTAAC	1 cut(s)	511
Kzo9I	GATC	2 cut(s)	153, 523
LmnI	GCTCC	2 cut(s)	125, 419
LpnPI	CCDG	5 cut(s)	93, 281, 318, 489, 581
Lsp1109I	GCAGC	1 cut(s)	579
LweI	GCATC	2 cut(s)	244, 595
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	155, 525
MboI	GATC	2 cut(s)	153, 523
MboII	GAAGA	2 cut(s)	278, 303
MfeI	CAATTG	2 cut(s)	89, 384
MlyI	GAGTC	2 cut(s)	189, 369
MmeI	TCCRAC	1 cut(s)	614
MnlI	CCTC	5 cut(s)	90, 216, 374, 416, 442
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	4 cut(s)	411, 510, 561, 651
MspI	CCGG	1 cut(s)	268
MspR9I	CCNGG	1 cut(s)	269
MunI	CAATTG	2 cut(s)	89, 384
Mva1269I	GAATGC	1 cut(s)	34
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	2 cut(s)	153, 523
NlaIII	CATG	3 cut(s)	251, 530, 559
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	2 cut(s)	120, 466
NmuCI	GTSAC	1 cut(s)	181
PagI	TCATGA	1 cut(s)	526
PceI	AGGCCT	2 cut(s)	452, 539
PctI	GAATGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	251, 306
PkrI	GCNGC	1 cut(s)	569
PleI	GAGTC	2 cut(s)	188, 368
PpsI	GAGTC	2 cut(s)	188, 368
PspN4I	GGNNCC	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	605
RsaI	GTAC	3 cut(s)	6, 399, 489
RsaNI	GTAC	3 cut(s)	5, 398, 488
SaqAI	TTAA	4 cut(s)	411, 510, 561, 651
SatI	GCNGC	1 cut(s)	568
Sau3AI	GATC	2 cut(s)	153, 523
ScaI	AGTACT	1 cut(s)	399
SchI	GAGTC	2 cut(s)	189, 369
ScrFI	CCNGG	1 cut(s)	269
SfaNI	GCATC	2 cut(s)	244, 595
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
SseBI	AGGCCT	2 cut(s)	452, 539
SspMI	CTAG	1 cut(s)	624
StuI	AGGCCT	2 cut(s)	452, 539
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	2 cut(s)	370, 623
TaaI	ACNGT	1 cut(s)	473
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	48, 366
TatI	WGTACW	1 cut(s)	397
TfiI	GAWTC	2 cut(s)	251, 306
Tru1I	TTAA	4 cut(s)	411, 510, 561, 651
Tru9I	TTAA	4 cut(s)	411, 510, 561, 651
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	567
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	544
XapI	RAATTY	6 cut(s)	18, 83, 171, 240, 259, 282
XmaJI	CCTAGG	1 cut(s)	623
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	1 cut(s)	624
ZrmI	AGTACT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.