Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0013734

Physical Location & Seq

Genomic Coordinates Forward (+)

26082097 .. 26083131

Gene Structure 1035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1223600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTCCCCTGAAGTCGTCGGTCGTCTGTCATCTTCATTGTCTGTATTGGATTTATCTGAAAACCATTTGACTGGATTCCTACCAAAAGAAATAGGACATTTCCCAAATCTGGAGGCCTTTGATATCTCAAATAACATGTTCTTTGGTGAAATTCCTCCAAATCTTGGGAGTTGTATTAAATTAGAGTTTCTAGACATGGAGGGGAACTTCATCCAAGGGGATATTCCATCTTCTTTGGGTTCACTAAGAGGTTTAATAGGGCTATATCTATCTCACAACAACTTGTCAGGCATGATTCCAGAATTCTTGGAGCGGTTTGAATTTATGCAATCTTTGGACCTCTCCTATAATAATTTTGAGGGCATGCTACCAATGAAAGGGATTTTCAGTAATGCAAGTGCCATATCAGTTGAAGGAAATAGTAAACTTTGCGGTGGAATACCTGACTTGCATTTGCCAGAATGCAAGTTACAACGTTCCAAGAAGGGAGGATTGAGTCTAACCGTCAAATGGGTAATCTCTCTTATTTTTGGTCTTCTTGGAATCACGTTTGCCATCGTGTTTTGGTACCTTTGTAGCGTAAGGAGAGAAAGAAAGGAGCACACTTCAAGTGATTCAGAAGAATTTCTCAGGCTATCTTACCGAAGTCTTCTAAATGCAACAAATGGATTCTCCATTTCCAACTTGATTGGTGTGGGAAGTTTTGGGTCTGTTTATAAAGGAGTACTCGAACAAGGTGAAACAGTTGCCATCAAGGTAATCAATCTCGTTCGTCGTGGCGCTTCCAAAAGTTTCATTGCTGAGTGTGAAGCTTTGAGAAATATCAGACACCGTAATCTTATGAAGGTACTCTCTGTATGTTCGGGGATTGACTATCGTGGTTGTGAGTTCAAGGCCTTAGTATATGAGTTTATGGTTAATGGGAGCTTAGAGGAATGGTTGCATCCAACTGAAGCAATTGGTGAAAACATTGAGAGACCAAGGAGCTTGAATTTTTCTCAAAGGTTGAGTATTGCAATTAACTCCGCCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

345

Amino Acids

38.17

Weight (kDa)

6.03

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	61 - 119	2.6e-06	Leucine rich repeat
Pkinase	PF00069	225 - 323	9.4e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	226 - 340	3.4e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013734)

Species	Orthologous Gene IDs
malus_domestica	MD00G1048000.v1.1 MD01G1112000.v1.1 MD02G1223600.v1.1 MD02G1224200.v1.1 MD07G1090100.v1.1
pyrus_communis	pycom01g12160
rosa_chinensis	RchiOBHm_Chr1g0344191 RchiOBHm_Chr1g0369871 RchiOBHm_Chr4g0404351 RchiOBHm_Chr7g0203471
rosa_multiflora	Rmu_sc0000019.1_g000003 Rmu_ssc0000434.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253800 Rroxscaffold_4G00286950 Rroxscaffold_4G00287100
rosa_rugosa	Rorug01G0352900 Rorug04G0040900 Rorug07G0076100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	717
Acc65I	GGTACC	1 cut(s)	567
AccB1I	GGYRCC	1 cut(s)	567
AccB7I	CCANNNNNTGG	1 cut(s)	164
AccBSI	CCGCTC	1 cut(s)	313
AciI	CCGC	3 cut(s)	313, 432, 1026
AclI	AACGTT	1 cut(s)	475
AcsI	RAATTY	5 cut(s)	150, 302, 320, 623, 991
AcuI	CTGAAG	2 cut(s)	30, 972
AfaI	GTAC	3 cut(s)	569, 726, 849
AfiI	CCNNNNNNNGG	4 cut(s)	109, 164, 377, 510
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	5 cut(s)	320, 413, 609, 892, 991
AjuI	GAANNNNNNNTTGG	2 cut(s)	207, 239
AluBI	AGCT	3 cut(s)	812, 927, 987
AluI	AGCT	3 cut(s)	812, 927, 987
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	1 cut(s)	970
AoxI	GGCC	2 cut(s)	114, 894
ApoI	RAATTY	5 cut(s)	150, 302, 320, 623, 991
Asp700I	GAANNNNTTC	1 cut(s)	624
Asp718I	GGTACC	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	782
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	3 cut(s)	158, 749, 974
AvaII	GGWCC	1 cut(s)	337
BaeI	ACNNNNGTAYC	2 cut(s)	559, 592
BanI	GGYRCC	1 cut(s)	567
BbsI	GAAGAC	2 cut(s)	527, 641
Bbv12I	GWGCWC	1 cut(s)	603
BccI	CCATC	3 cut(s)	235, 563, 758
BceAI	ACGGC	1 cut(s)	1013
BcoDI	GTCTC	1 cut(s)	970
BfaI	CTAG	1 cut(s)	191
BfoI	RGCGCY	1 cut(s)	783
BmcAI	AGTACT	1 cut(s)	726
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	569
BmsI	GCATC	1 cut(s)	952
BpiI	GAAGAC	2 cut(s)	527, 641
BpmI	CTGGAG	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	970
BsaJI	CCNNGG	2 cut(s)	214, 980
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 164, 377, 510
Bse1I	ACTGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	795
BseDI	CCNNGG	2 cut(s)	214, 980
BseGI	GGATG	2 cut(s)	210, 943
BseLI	CCNNNNNNNGG	4 cut(s)	109, 164, 377, 510
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	2 cut(s)	643, 792
BseNI	ACTGG	1 cut(s)	76
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	2 cut(s)	116, 896
BshNI	GGYRCC	1 cut(s)	567
BsiEI	CGRYCG	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	603
BslI	CCNNNNNNNGG	4 cut(s)	109, 164, 377, 510
BsmAI	GTCTC	1 cut(s)	970
BsmI	GAATGC	1 cut(s)	467
BsnI	GGCC	2 cut(s)	116, 896
Bso31I	GGTCTC	1 cut(s)	970
Bsp1286I	GDGCHC	1 cut(s)	603
BspACI	CCGC	3 cut(s)	313, 432, 1026
BspANI	GGCC	2 cut(s)	116, 896
BspCNI	CTCAG	2 cut(s)	642, 793
BspLI	GGNNCC	1 cut(s)	569
BspT107I	GGYRCC	1 cut(s)	567
BspTNI	GGTCTC	1 cut(s)	970
BsrBI	CCGCTC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	795
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	214, 980
BssT1I	CCWWGG	2 cut(s)	214, 980
Bst4CI	ACNGT	3 cut(s)	505, 745, 833
BstC8I	GCNNGC	1 cut(s)	365
BstDEI	CTNAG	5 cut(s)	245, 629, 801, 898, 928
BstF5I	GGATG	2 cut(s)	210, 943
BstH2I	RGCGCY	1 cut(s)	783
BstHHI	GCGC	1 cut(s)	782
BstMAI	GTCTC	1 cut(s)	970
BstMCI	CGRYCG	1 cut(s)	22
BstNSI	RCATGY	2 cut(s)	139, 367
BstV2I	GAAGAC	2 cut(s)	527, 641
BstXI	CCANNNNNNTGG	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	116, 896
BtsCI	GGATG	2 cut(s)	210, 943
Cac8I	GCNNGC	1 cut(s)	365
CfoI	GCGC	1 cut(s)	782
Cfr13I	GGNCC	1 cut(s)	337
Csp6I	GTAC	3 cut(s)	568, 725, 848
CviAII	CATG	4 cut(s)	136, 196, 292, 364
CviJI	RGCY	7 cut(s)	116, 262, 634, 812, 896, 927, 987
CviKI_1	RGCY	7 cut(s)	116, 262, 634, 812, 896, 927, 987
CviQI	GTAC	3 cut(s)	568, 725, 848
DdeI	CTNAG	5 cut(s)	245, 629, 801, 898, 928
EciI	GGCGGA	1 cut(s)	1015
Eco130I	CCWWGG	2 cut(s)	214, 980
Eco147I	AGGCCT	2 cut(s)	116, 896
Eco31I	GGTCTC	1 cut(s)	970
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	337
Eco57I	CTGAAG	2 cut(s)	30, 972
EcoRI	GAATTC	1 cut(s)	302
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	2 cut(s)	214, 980
ErhI	CCWWGG	2 cut(s)	214, 980
FaeI	CATG	4 cut(s)	139, 199, 295, 367
FatI	CATG	4 cut(s)	135, 195, 291, 363
FokI	GGATG	2 cut(s)	197, 930
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	1 cut(s)	781
GsuI	CTGGAG	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	783
HaeIII	GGCC	2 cut(s)	116, 896
HhaI	GCGC	1 cut(s)	782
Hin1II	CATG	4 cut(s)	139, 199, 295, 367
Hin6I	GCGC	1 cut(s)	780
HinP1I	GCGC	1 cut(s)	780
HindIII	AAGCTT	1 cut(s)	810
HinfI	GANTC	6 cut(s)	75, 295, 496, 543, 614, 669
HphI	GGTGA	3 cut(s)	158, 749, 974
Hpy166II	GTNNAC	2 cut(s)	242, 425
Hpy188I	TCNGA	3 cut(s)	58, 619, 827
Hpy188III	TCNNGA	3 cut(s)	110, 191, 299
Hpy8I	GTNNAC	2 cut(s)	242, 425
Hpy99I	CGWCG	2 cut(s)	20, 777
HpyAV	CCTTC	3 cut(s)	407, 478, 838
HpyCH4III	ACNGT	3 cut(s)	505, 745, 833
HpyCH4IV	ACGT	2 cut(s)	475, 548
HpyCH4V	TGCA	7 cut(s)	328, 395, 451, 465, 659, 943, 1016
HpyF3I	CTNAG	5 cut(s)	245, 629, 801, 898, 928
HpySE526I	ACGT	2 cut(s)	475, 548
Hsp92II	CATG	4 cut(s)	139, 199, 295, 367
HspAI	GCGC	1 cut(s)	780
KpnI	GGTACC	1 cut(s)	571
LmnI	GCTCC	4 cut(s)	310, 598, 924, 984
LpnPI	CCDG	8 cut(s)	21, 57, 95, 273, 312, 456, 471, 616
LweI	GCATC	1 cut(s)	952
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	2 cut(s)	475, 548
MaeIII	GTNAC	1 cut(s)	468
MbiI	CCGCTC	1 cut(s)	313
MboII	GAAGA	5 cut(s)	24, 222, 527, 632, 641
MfeI	CAATTG	1 cut(s)	957
MhlI	GDGCHC	1 cut(s)	603
MluCI	AATT	9 cut(s)	150, 179, 302, 320, 352, 623, 957, 991, 1017
MlyI	GAGTC	1 cut(s)	505
MmeI	TCCRAC	2 cut(s)	705, 971
MnlI	CCTC	8 cut(s)	106, 165, 193, 242, 350, 352, 482, 925
MroXI	GAANNNNTTC	1 cut(s)	624
MseI	TTAA	4 cut(s)	177, 254, 918, 1020
MunI	CAATTG	1 cut(s)	957
Mva1269I	GAATGC	1 cut(s)	467
NlaIII	CATG	4 cut(s)	139, 199, 295, 367
NlaIV	GGNNCC	1 cut(s)	569
NspI	RCATGY	2 cut(s)	139, 367
PaeI	GCATGC	1 cut(s)	367
PceI	AGGCCT	2 cut(s)	116, 896
PciI	ACATGT	1 cut(s)	135
PctI	GAATGC	1 cut(s)	467
PdmI	GAANNNNTTC	1 cut(s)	624
PfeI	GAWTC	5 cut(s)	75, 295, 543, 614, 669
PflMI	CCANNNNNTGG	1 cut(s)	164
PleI	GAGTC	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	504
PscI	ACATGT	1 cut(s)	135
PsiI	TTATAA	1 cut(s)	717
Psp1406I	AACGTT	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	569
PspPI	GGNCC	1 cut(s)	337
RsaI	GTAC	3 cut(s)	569, 726, 849
RsaNI	GTAC	3 cut(s)	568, 725, 848
SaqAI	TTAA	4 cut(s)	177, 254, 918, 1020
Sau96I	GGNCC	1 cut(s)	337
ScaI	AGTACT	1 cut(s)	726
SchI	GAGTC	1 cut(s)	505
SduI	GDGCHC	1 cut(s)	603
SfaNI	GCATC	1 cut(s)	952
SinI	GGWCC	1 cut(s)	337
SphI	GCATGC	1 cut(s)	367
Sse9I	AATT	9 cut(s)	150, 179, 302, 320, 352, 623, 957, 991, 1017
SseBI	AGGCCT	2 cut(s)	116, 896
SsiI	CCGC	3 cut(s)	313, 432, 1026
SspMI	CTAG	1 cut(s)	191
StuI	AGGCCT	2 cut(s)	116, 896
StyI	CCWWGG	2 cut(s)	214, 980
TaaI	ACNGT	3 cut(s)	505, 745, 833
TaiI	ACGT	2 cut(s)	478, 551
TaqI	TCGA	1 cut(s)	729
TaqII	GACCGA	1 cut(s)	8
TasI	AATT	9 cut(s)	150, 179, 302, 320, 352, 623, 957, 991, 1017
TatI	WGTACW	1 cut(s)	724
TfiI	GAWTC	5 cut(s)	75, 295, 543, 614, 669
Tru1I	TTAA	4 cut(s)	177, 254, 918, 1020
Tru9I	TTAA	4 cut(s)	177, 254, 918, 1020
TspDTI	ATGAA	5 cut(s)	24, 199, 389, 784, 857
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	5 cut(s)	150, 302, 320, 623, 991
XbaI	TCTAGA	1 cut(s)	190
XceI	RCATGY	2 cut(s)	139, 367
XmnI	GAANNNNTTC	1 cut(s)	624
XspI	CTAG	1 cut(s)	191
ZrmI	AGTACT	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.