Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000019.1

Orthogroup ID

OG0013734

Physical Location & Seq

Genomic Coordinates Reverse (-)

11635 .. 13431

Gene Structure 1797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000019.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atggaggaagattttgatgccaagttaaagattcaggggaattcttcctctaatggtggtggtggtgctaatagtaacgttcagagagccaagaactttgcttgcagggctccccaagaaatttcaccatccaagactttgaatttggcaagatctatgatcaaggacaaaaaaaaagaggaagtgaaagaagaggcaggggtctacggcactgagcttcttggggtagaggaagaagaggaagtggtctacgacgaattcttggagcagtttcactgtctccaatctctggatctctcttacaacaatttggagggcatggtaccaacaaaaggaattttcaagaatgcaactgctacgtcagtcgaaggaaatagtaaactttgtgatggcatacctgaatttcaattgccgaggtgcaagtttccacatccaagaaggggagcattgaccaaaaccttgaaatggatgatctctctaatttgtggaattcttggagtcactttagcagtttctattttctacaattttgtcttacagagggaaaagaagcatcaaatttcccatgattcagaaaattttctccgggtttcttaccaaattcttctaaaagctaccaatggattctcttctgcaagcttggttggttcaggcagttttgggtctgtgtataaaggagtcctcgaccaaggagaaacaacaattgctgtcaaagtactcaacctcgttaatcgtggagcttccaaaagtttctttgccgagtgtgaggccttgagaaacattagacaccgtaatctgttgaaggtactttctgtatgttcaggtgttaactatcaaggtgatcatgatttcaaggccttgatttatgagttcatggttaatggcagcttagatgagtggttgcatccaactcaggcagttgctgagacgattgagagacctaggagtttgagttttttctcaaaggttaaacattgctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

327

Amino Acids

36.39

Weight (kDa)

7.58

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013734)

Species	Orthologous Gene IDs
malus_domestica	MD00G1048000.v1.1 MD01G1112000.v1.1 MD02G1223600.v1.1 MD02G1224200.v1.1 MD07G1090100.v1.1
pyrus_communis	pycom01g12160
rosa_chinensis	RchiOBHm_Chr1g0344191 RchiOBHm_Chr1g0369871 RchiOBHm_Chr4g0404351 RchiOBHm_Chr7g0203471
rosa_multiflora	Rmu_sc0000019.1_g000003 Rmu_ssc0000434.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253800 Rroxscaffold_4G00286950 Rroxscaffold_4G00287100
rosa_rugosa	Rorug01G0352900 Rorug04G0040900 Rorug07G0076100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	322
AccB1I	GGYRCC	1 cut(s)	322
AccB7I	CCANNNNNTGG	1 cut(s)	289
AccI	GTMKAC	2 cut(s)	204, 249
AclI	AACGTT	1 cut(s)	78
AclWI	GGATC	1 cut(s)	300
AfaI	GTAC	3 cut(s)	324, 717, 807
AfiI	CCNNNNNNNGG	4 cut(s)	289, 332, 440, 465
AgsI	TTSAA	6 cut(s)	142, 343, 407, 463, 802, 853
AluBI	AGCT	5 cut(s)	217, 614, 639, 740, 888
AluI	AGCT	5 cut(s)	217, 614, 639, 740, 888
Alw26I	GTCTC	3 cut(s)	284, 920, 931
AlwI	GGATC	1 cut(s)	300
AlwNI	CAGNNNCTG	1 cut(s)	923
AoxI	GGCC	2 cut(s)	768, 855
ApeKI	GCWGC	1 cut(s)	885
ArsI	GACNNNNNNTTYG	2 cut(s)	127, 159
Asp700I	GAANNNNTTC	1 cut(s)	579
Asp718I	GGTACC	1 cut(s)	322
AspA2I	CCTAGG	1 cut(s)	941
AsuC2I	CCSGG	1 cut(s)	587
AsuHPI	GGTGA	2 cut(s)	117, 851
AvrII	CCTAGG	1 cut(s)	941
BanI	GGYRCC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	897
BccI	CCATC	2 cut(s)	136, 383
BceAI	ACGGC	1 cut(s)	223
BclI	TGATCA	2 cut(s)	159, 841
BcnI	CCSGG	1 cut(s)	587
BcoDI	GTCTC	3 cut(s)	284, 920, 931
BfaI	CTAG	1 cut(s)	942
BglII	AGATCT	1 cut(s)	152
BisI	GCNGC	1 cut(s)	886
BlnI	CCTAGG	1 cut(s)	941
BlsI	GCNGC	1 cut(s)	887
BmcAI	AGTACT	1 cut(s)	717
Bme1390I	CCNGG	1 cut(s)	587
BmiI	GGNNCC	2 cut(s)	111, 324
BmrFI	CCNGG	1 cut(s)	587
BmsI	GCATC	3 cut(s)	7, 562, 913
BpuEI	CTTGAG	1 cut(s)	793
BpuMI	CCSGG	1 cut(s)	587
BsaI	GGTCTC	1 cut(s)	931
BsaJI	CCNNGG	3 cut(s)	413, 688, 941
BsaXI	ACNNNNNCTCC	2 cut(s)	937, 967
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 332, 440, 465
Bse3DI	GCAATG	1 cut(s)	973
BseDI	CCNNGG	3 cut(s)	413, 688, 941
BseGI	GGATG	4 cut(s)	128, 430, 474, 904
BseLI	CCNNNNNNNGG	4 cut(s)	289, 332, 440, 465
BseMI	GCAATG	1 cut(s)	973
BseMII	CTCAG	3 cut(s)	204, 915, 926
BseXI	GCAGC	1 cut(s)	897
BshFI	GGCC	2 cut(s)	770, 857
BshNI	GGYRCC	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	586
BslI	CCNNNNNNNGG	4 cut(s)	289, 332, 440, 465
BsmAI	GTCTC	3 cut(s)	284, 920, 931
BsmBI	CGTCTC	1 cut(s)	920
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	770, 857
Bso31I	GGTCTC	1 cut(s)	931
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	5 cut(s)	152, 159, 292, 471, 841
BspANI	GGCC	2 cut(s)	770, 857
BspCNI	CTCAG	3 cut(s)	205, 916, 925
BspHI	TCATGA	1 cut(s)	844
BspLI	GGNNCC	2 cut(s)	111, 324
BspPI	GGATC	1 cut(s)	300
BspT107I	GGYRCC	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	931
BsrDI	GCAATG	1 cut(s)	973
BssECI	CCNNGG	3 cut(s)	413, 688, 941
BssMI	GATC	5 cut(s)	152, 159, 292, 471, 841
BssT1I	CCWWGG	2 cut(s)	688, 941
Bst4CI	ACNGT	2 cut(s)	278, 791
Bst6I	CTCTTC	3 cut(s)	186, 231, 634
BstC8I	GCNNGC	2 cut(s)	103, 637
BstDEI	CTNAG	4 cut(s)	213, 889, 912, 924
BstF5I	GGATG	4 cut(s)	128, 430, 474, 904
BstKTI	GATC	5 cut(s)	155, 162, 295, 474, 844
BstMAI	GTCTC	3 cut(s)	284, 920, 931
BstMBI	GATC	5 cut(s)	152, 159, 292, 471, 841
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	585
BstV1I	GCAGC	1 cut(s)	897
BstX2I	RGATCY	2 cut(s)	152, 292
BstYI	RGATCY	2 cut(s)	152, 292
BsuRI	GGCC	2 cut(s)	770, 857
BtsCI	GGATG	4 cut(s)	128, 430, 474, 904
BtsIMutI	CAGTG	2 cut(s)	210, 274
Cac8I	GCNNGC	2 cut(s)	103, 637
CaiI	CAGNNNCTG	1 cut(s)	923
CciI	TCATGA	1 cut(s)	844
Csp6I	GTAC	3 cut(s)	323, 716, 806
CviAII	CATG	4 cut(s)	319, 566, 845, 874
CviJI	RGCY	9 cut(s)	89, 110, 217, 614, 639, 740, 770, 857, 888
CviKI_1	RGCY	9 cut(s)	89, 110, 217, 614, 639, 740, 770, 857, 888
CviQI	GTAC	3 cut(s)	323, 716, 806
DdeI	CTNAG	4 cut(s)	213, 889, 912, 924
DpnI	GATC	5 cut(s)	154, 161, 294, 473, 843
DpnII	GATC	5 cut(s)	152, 159, 292, 471, 841
Eam1104I	CTCTTC	3 cut(s)	186, 231, 634
EarI	CTCTTC	3 cut(s)	186, 231, 634
Eco130I	CCWWGG	2 cut(s)	688, 941
Eco147I	AGGCCT	2 cut(s)	770, 857
Eco24I	GRGCYC	1 cut(s)	112
Eco31I	GGTCTC	1 cut(s)	931
EcoRI	GAATTC	3 cut(s)	40, 257, 489
EcoT14I	CCWWGG	2 cut(s)	688, 941
EcoT38I	GRGCYC	1 cut(s)	112
ErhI	CCWWGG	2 cut(s)	688, 941
Esp3I	CGTCTC	1 cut(s)	920
FaeI	CATG	4 cut(s)	322, 569, 848, 877
FaiI	YATR	9 cut(s)	158, 320, 395, 567, 672, 817, 846, 867, 875
FatI	CATG	4 cut(s)	318, 565, 844, 873
FbaI	TGATCA	2 cut(s)	159, 841
FblI	GTMKAC	2 cut(s)	204, 249
Fnu4HI	GCNGC	1 cut(s)	886
FokI	GGATG	4 cut(s)	115, 417, 481, 891
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	886
FspBI	CTAG	1 cut(s)	942
GluI	GCNGC	1 cut(s)	886
HaeIII	GGCC	2 cut(s)	770, 857
HapII	CCGG	1 cut(s)	586
Hin1II	CATG	4 cut(s)	322, 569, 848, 877
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HindIII	AAGCTT	1 cut(s)	637
HinfI	GANTC	5 cut(s)	31, 498, 569, 624, 678
HpaI	GTTAAC	1 cut(s)	829
HpaII	CCGG	1 cut(s)	586
HphI	GGTGA	2 cut(s)	117, 851
Hpy166II	GTNNAC	4 cut(s)	205, 250, 380, 829
Hpy188I	TCNGA	2 cut(s)	84, 574
Hpy188III	TCNNGA	3 cut(s)	290, 343, 845
Hpy8I	GTNNAC	4 cut(s)	205, 250, 380, 829
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	3 cut(s)	362, 432, 796
HpyCH4III	ACNGT	2 cut(s)	278, 791
HpyCH4IV	ACGT	2 cut(s)	78, 359
HpyCH4V	TGCA	5 cut(s)	105, 350, 420, 635, 904
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	4 cut(s)	213, 889, 912, 924
HpySE526I	ACGT	2 cut(s)	78, 359
Hsp92II	CATG	4 cut(s)	322, 569, 848, 877
KpnI	GGTACC	1 cut(s)	326
Ksp22I	TGATCA	2 cut(s)	159, 841
KspAI	GTTAAC	1 cut(s)	829
Kzo9I	GATC	5 cut(s)	152, 159, 292, 471, 841
LmnI	GCTCC	4 cut(s)	115, 265, 443, 737
LpnPI	CCDG	9 cut(s)	20, 91, 183, 275, 411, 599, 636, 807, 899
Lsp1109I	GCAGC	1 cut(s)	897
LweI	GCATC	3 cut(s)	7, 562, 913
MaeI	CTAG	1 cut(s)	942
MaeII	ACGT	2 cut(s)	78, 359
MaeIII	GTNAC	2 cut(s)	74, 499
MalI	GATC	5 cut(s)	154, 161, 294, 473, 843
MboI	GATC	5 cut(s)	152, 159, 292, 471, 841
MboII	GAAGA	7 cut(s)	20, 36, 203, 245, 248, 596, 621
MfeI	CAATTG	2 cut(s)	407, 702
MflI	RGATCY	2 cut(s)	152, 292
MhlI	GDGCHC	1 cut(s)	112
MlyI	GAGTC	2 cut(s)	507, 687
MmeI	TCCRAC	1 cut(s)	932
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	5 cut(s)	26, 729, 828, 879, 969
MspI	CCGG	1 cut(s)	586
MspR9I	CCNGG	1 cut(s)	587
MunI	CAATTG	2 cut(s)	407, 702
Mva1269I	GAATGC	1 cut(s)	352
MwoI	GCNNNNNNNGC	1 cut(s)	107
NciI	CCSGG	1 cut(s)	587
NdeII	GATC	5 cut(s)	152, 159, 292, 471, 841
NlaIII	CATG	4 cut(s)	322, 569, 848, 877
NlaIV	GGNNCC	2 cut(s)	111, 324
NmeAIII	GCCGAG	2 cut(s)	438, 784
NmuCI	GTSAC	1 cut(s)	499
PagI	TCATGA	1 cut(s)	844
PceI	AGGCCT	2 cut(s)	770, 857
PctI	GAATGC	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	3 cut(s)	31, 569, 624
PflMI	CCANNNNNTGG	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	887
PleI	GAGTC	2 cut(s)	506, 686
PpsI	GAGTC	2 cut(s)	506, 686
Psp1406I	AACGTT	1 cut(s)	78
PspN4I	GGNNCC	2 cut(s)	111, 324
PstNI	CAGNNNCTG	1 cut(s)	923
PsuI	RGATCY	2 cut(s)	152, 292
RsaI	GTAC	3 cut(s)	324, 717, 807
RsaNI	GTAC	3 cut(s)	323, 716, 806
SaqAI	TTAA	5 cut(s)	26, 729, 828, 879, 969
SatI	GCNGC	1 cut(s)	886
Sau3AI	GATC	5 cut(s)	152, 159, 292, 471, 841
ScaI	AGTACT	1 cut(s)	717
SchI	GAGTC	2 cut(s)	507, 687
ScrFI	CCNGG	1 cut(s)	587
SduI	GDGCHC	1 cut(s)	112
SfaNI	GCATC	3 cut(s)	7, 562, 913
SmlI	CTYRAG	1 cut(s)	772
SmoI	CTYRAG	1 cut(s)	772
SseBI	AGGCCT	2 cut(s)	770, 857
SspMI	CTAG	1 cut(s)	942
StuI	AGGCCT	2 cut(s)	770, 857
StyD4I	CCNGG	1 cut(s)	585
StyI	CCWWGG	2 cut(s)	688, 941
TaaI	ACNGT	2 cut(s)	278, 791
TaiI	ACGT	2 cut(s)	81, 362
TaqI	TCGA	2 cut(s)	366, 684
TatI	WGTACW	1 cut(s)	715
TfiI	GAWTC	3 cut(s)	31, 569, 624
Tru1I	TTAA	5 cut(s)	26, 729, 828, 879, 969
Tru9I	TTAA	5 cut(s)	26, 729, 828, 879, 969
TscAI	CASTG	2 cut(s)	217, 281
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	1 cut(s)	885
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	1 cut(s)	862
TspRI	CASTG	2 cut(s)	217, 281
Van91I	CCANNNNNTGG	1 cut(s)	289
XmaJI	CCTAGG	1 cut(s)	941
XmiI	GTMKAC	2 cut(s)	204, 249
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	1 cut(s)	942
ZrmI	AGTACT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.