RchiOBHm_Chr1g0369871
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
59532775 .. 59533083
309 bp
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UTR
Exon/CDS
Intron
PRQ59410

Sequence Viewer

Length: 309 bp
ATGTCATCAATTAACTTCCTTCCAAAGGTTTCATACCAGACACTTCACCATGCCACTGGCGGATTCTCTCCAAGCAATCAAATTGGATCAGGCGGTTTTGGCTCTGTATATAAAGGGATTCTTAATCAAGAAGAAAACAACGTTGTTGCCATCAAGGTCCTCAACCTTCAACAAAAAGGTGCTTCCAAGAGATTTGTGGTTGAATGCAATGCACTGAGAAATATCCGGCACAGGAATCTTGTGAAGATCTTAACATGTTGCTCCTGCACGGATTACAATGGTAATGACTTCAAAGCTCTAGTTTTTTAG

Protein Analysis

102

Amino Acids

11.22

Weight (kDa)

9.42

Isoelectric Point (pI)

48.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 25 - 89 1.5e-11 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 25 - 88 1.3e-10 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 60, 93
AclI AACGTT 1 cut(s) 141
AclWI GGATC 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 25
AflIII ACRYGT 1 cut(s) 254
AgsI TTSAA 3 cut(s) 170, 203, 292
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
AlwI GGATC 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 38
AvaII GGWCC 1 cut(s) 157
BccI CCATC 1 cut(s) 158
BfaI CTAG 1 cut(s) 299
BglII AGATCT 1 cut(s) 246
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 61
Bse3DI GCAATG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 250
BsiSI CCGG 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 25
BsmI GAATGC 1 cut(s) 209
Bsp143I GATC 2 cut(s) 86, 246
BspACI CCGC 2 cut(s) 60, 93
BspCNI CTCAG 1 cut(s) 207
BspPI GGATC 1 cut(s) 94
BsrDI GCAATG 1 cut(s) 214
BsrI ACTGG 1 cut(s) 61
BssMI GATC 2 cut(s) 86, 246
BstDEI CTNAG 1 cut(s) 215
BstENI CCTNNNNNAGG 1 cut(s) 23
BstKTI GATC 2 cut(s) 89, 249
BstMBI GATC 2 cut(s) 86, 246
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 246
BstXI CCANNNNNNTGG 1 cut(s) 56
BstYI RGATCY 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 54, 212
Cfr13I GGNCC 1 cut(s) 157
CviAII CATG 2 cut(s) 50, 255
CviJI RGCY 2 cut(s) 102, 296
CviKI_1 RGCY 2 cut(s) 102, 296
DdeI CTNAG 1 cut(s) 215
DpnI GATC 2 cut(s) 88, 248
DpnII GATC 2 cut(s) 86, 246
EciI GGCGGA 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 157
EcoNI CCTNNNNNAGG 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 157
FaeI CATG 2 cut(s) 53, 258
FaiI YATR 5 cut(s) 34, 51, 109, 111, 256
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 2 cut(s) 49, 254
FspBI CTAG 1 cut(s) 299
HapII CCGG 1 cut(s) 226
Hin1II CATG 2 cut(s) 53, 258
HinfI GANTC 3 cut(s) 63, 118, 235
HpaII CCGG 1 cut(s) 226
HphI GGTGA 1 cut(s) 38
Hpy188III TCNNGA 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 29, 176
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 3 cut(s) 207, 212, 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpyF3I CTNAG 1 cut(s) 215
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 2 cut(s) 53, 258
Kzo9I GATC 2 cut(s) 86, 246
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 6 cut(s) 42, 50, 75, 217, 239, 277
MaeI CTAG 1 cut(s) 299
MaeII ACGT 1 cut(s) 141
MalI GATC 2 cut(s) 88, 248
MboI GATC 2 cut(s) 86, 246
MboII GAAGA 2 cut(s) 143, 256
MflI RGATCY 1 cut(s) 246
MluCI AATT 2 cut(s) 9, 81
MnlI CCTC 1 cut(s) 170
MseI TTAA 3 cut(s) 12, 123, 251
MspI CCGG 1 cut(s) 226
Mva1269I GAATGC 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 99
NdeII GATC 2 cut(s) 86, 246
NlaIII CATG 2 cut(s) 53, 258
NspI RCATGY 1 cut(s) 258
PciI ACATGT 1 cut(s) 254
PctI GAATGC 1 cut(s) 209
PfeI GAWTC 3 cut(s) 63, 118, 235
PpuMI RGGWCCY 1 cut(s) 157
PscI ACATGT 1 cut(s) 254
Psp1406I AACGTT 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 157
PspPI GGNCC 1 cut(s) 157
PspPPI RGGWCCY 1 cut(s) 157
PsuI RGATCY 1 cut(s) 246
SaqAI TTAA 3 cut(s) 12, 123, 251
Sau3AI GATC 2 cut(s) 86, 246
Sau96I GGNCC 1 cut(s) 157
SetI ASST 6 cut(s) 30, 144, 159, 168, 181, 298
SinI GGWCC 1 cut(s) 157
Sse9I AATT 2 cut(s) 9, 81
SsiI CCGC 2 cut(s) 60, 93
SspMI CTAG 1 cut(s) 299
TaiI ACGT 1 cut(s) 144
TasI AATT 2 cut(s) 9, 81
TfiI GAWTC 3 cut(s) 63, 118, 235
Tru1I TTAA 3 cut(s) 12, 123, 251
Tru9I TTAA 3 cut(s) 12, 123, 251
TscAI CASTG 2 cut(s) 61, 219
TspDTI ATGAA 1 cut(s) 21
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 2 cut(s) 61, 219
VpaK11BI GGWCC 1 cut(s) 157
XagI CCTNNNNNAGG 1 cut(s) 23
XceI RCATGY 1 cut(s) 258
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.