Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013734

Physical Location & Seq

Genomic Coordinates Reverse (-)

6403256 .. 6403936

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0040900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAGGGGTTTTCGTGATGCATTGGGATATGGTGATCTTGCTGATCTAGGGTTTAAGGGTGCAAAGATGACCTGGTGGAACTCTAAGACTCAAATACGCTTGGATAGAGCAGTTGGAACCTCTACATGGAGTGACATCTTTGGTTATTCAAGGGTGAAGCACTTGCCGCCCAATGATTCTGACCACGTTCCCATTCTACTACAAGCTAGTTCGGTACCTTTGCCCAAACGTCCTAAGTGGCACATGTTTAAATTTGAGTCCTTTTGGTTGCAGCACCAAGAGTGTGATCCTCTTGTGTTATCTAATTTGAAAACAGAAGATGGAGGTGCTCTTATGTTTGTACTAACAAGAAAGATCATTAATACGAGATGTGCCTTGGAATCTTGGCAGCATGATACCTTTAGACTGCGTCAAAATAAGATGGTGGATATTCGGAGCAGATTGGAAGTGCTTATGAATGAGTCGATGTCTGAGGCAGTTTACAATGAGAAGAAAGATTTAATGATTTCTTTACAGGATATTTTGTCGCAGGAAGAGGCATTTTGGAAGCAACGGGCCAAGCTTACTTGGTTGCAAGAGGGTGATAGAAATTCAAGTTTCTTTCACAAGAAGGCAGCTAATCAGAAGCGCAAAAATAATTTGTTGGGACTGTTTGATCATGAGGGGCAGTGGAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

226

Amino Acids

26.52

Weight (kDa)

9.51

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013734)

Species	Orthologous Gene IDs
malus_domestica	MD00G1048000.v1.1 MD01G1112000.v1.1 MD02G1223600.v1.1 MD02G1224200.v1.1 MD07G1090100.v1.1
pyrus_communis	pycom01g12160
rosa_chinensis	RchiOBHm_Chr1g0344191 RchiOBHm_Chr1g0369871 RchiOBHm_Chr4g0404351 RchiOBHm_Chr7g0203471
rosa_multiflora	Rmu_sc0000019.1_g000003 Rmu_ssc0000434.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253800 Rroxscaffold_4G00286950 Rroxscaffold_4G00287100
rosa_rugosa	Rorug01G0352900 Rorug04G0040900 Rorug07G0076100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	214
AccB1I	GGYRCC	1 cut(s)	214
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	2 cut(s)	251, 589
AfaI	GTAC	2 cut(s)	216, 342
AfiI	CCNNNNNNNGG	1 cut(s)	126
AflIII	ACRYGT	1 cut(s)	243
AgsI	TTSAA	3 cut(s)	150, 310, 594
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	3 cut(s)	206, 562, 617
AluI	AGCT	3 cut(s)	206, 562, 617
Alw21I	GWGCWC	1 cut(s)	331
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	1 cut(s)	555
ApeKI	GCWGC	3 cut(s)	271, 388, 614
ApoI	RAATTY	2 cut(s)	251, 589
AseI	ATTAAT	1 cut(s)	360
Asp718I	GGTACC	1 cut(s)	214
AspLEI	GCGC	1 cut(s)	630
AspS9I	GGNCC	1 cut(s)	555
AsuHPI	GGTGA	3 cut(s)	44, 166, 593
BanI	GGYRCC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	3 cut(s)	283, 400, 626
BccI	CCATC	2 cut(s)	314, 415
BciT130I	CCWGG	1 cut(s)	73
BclI	TGATCA	1 cut(s)	655
BfaI	CTAG	2 cut(s)	47, 207
BisI	GCNGC	4 cut(s)	167, 272, 389, 615
BlsI	GCNGC	4 cut(s)	168, 273, 390, 616
Bme1390I	CCNGG	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	555
BmiI	GGNNCC	2 cut(s)	118, 216
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	7
BsaJI	CCNNGG	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	462
BseXI	GCAGC	3 cut(s)	283, 400, 626
BshFI	GGCC	1 cut(s)	557
BshNI	GGYRCC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	331
BslFI	GGGAC	1 cut(s)	660
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	660
BsnI	GGCC	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	5 cut(s)	34, 43, 286, 354, 655
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	1 cut(s)	557
BspCNI	CTCAG	1 cut(s)	463
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	2 cut(s)	118, 216
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	5 cut(s)	34, 43, 286, 354, 655
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	651
Bst6I	CTCTTC	1 cut(s)	528
BstDEI	CTNAG	3 cut(s)	84, 234, 471
BstHHI	GCGC	1 cut(s)	630
BstKTI	GATC	5 cut(s)	37, 46, 289, 357, 658
BstMBI	GATC	5 cut(s)	34, 43, 286, 354, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNI	CCWGG	1 cut(s)	73
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	71
BstV1I	GCAGC	3 cut(s)	283, 400, 626
BsuRI	GGCC	1 cut(s)	557
BtsI	GCAGTG	1 cut(s)	674
BtsIMutI	CAGTG	1 cut(s)	674
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	1 cut(s)	630
Cfr13I	GGNCC	1 cut(s)	555
CseI	GACGC	1 cut(s)	398
CsiI	ACCWGGT	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	215, 341
CviAII	CATG	4 cut(s)	126, 244, 392, 659
CviJI	RGCY	4 cut(s)	206, 557, 562, 617
CviKI_1	RGCY	4 cut(s)	206, 557, 562, 617
CviQI	GTAC	2 cut(s)	215, 341
DdeI	CTNAG	3 cut(s)	84, 234, 471
DpnI	GATC	5 cut(s)	36, 45, 288, 356, 657
DpnII	GATC	5 cut(s)	34, 43, 286, 354, 655
DraI	TTTAAA	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	375
EcoT22I	ATGCAT	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	4 cut(s)	129, 247, 395, 662
FaiI	YATR	7 cut(s)	30, 127, 245, 335, 393, 455, 660
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	4 cut(s)	125, 243, 391, 658
FbaI	TGATCA	1 cut(s)	655
Fnu4HI	GCNGC	4 cut(s)	167, 272, 389, 615
Fsp4HI	GCNGC	4 cut(s)	167, 272, 389, 615
FspBI	CTAG	2 cut(s)	47, 207
GlaI	GCGC	1 cut(s)	629
GluI	GCNGC	4 cut(s)	167, 272, 389, 615
HaeIII	GGCC	1 cut(s)	557
HgaI	GACGC	1 cut(s)	398
HhaI	GCGC	1 cut(s)	630
Hin1II	CATG	4 cut(s)	129, 247, 395, 662
Hin6I	GCGC	1 cut(s)	628
HinP1I	GCGC	1 cut(s)	628
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	5 cut(s)	88, 176, 257, 380, 461
HphI	GGTGA	3 cut(s)	44, 166, 593
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	4 cut(s)	181, 435, 472, 624
Hpy188III	TCNNGA	2 cut(s)	14, 659
Hpy8I	GTNNAC	1 cut(s)	481
HpyAV	CCTTC	1 cut(s)	604
HpyCH4III	ACNGT	1 cut(s)	651
HpyCH4IV	ACGT	2 cut(s)	186, 229
HpyCH4V	TGCA	4 cut(s)	20, 62, 271, 574
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	3 cut(s)	84, 234, 471
HpySE526I	ACGT	2 cut(s)	186, 229
Hsp92II	CATG	4 cut(s)	129, 247, 395, 662
HspAI	GCGC	1 cut(s)	628
KpnI	GGTACC	1 cut(s)	218
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	5 cut(s)	34, 43, 286, 354, 655
LmnI	GCTCC	1 cut(s)	435
LpnPI	CCDG	4 cut(s)	58, 85, 500, 515
Lsp1109I	GCAGC	3 cut(s)	283, 400, 626
LweI	GCATC	1 cut(s)	7
MabI	ACCWGGT	1 cut(s)	71
MaeI	CTAG	2 cut(s)	47, 207
MaeII	ACGT	2 cut(s)	186, 229
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	5 cut(s)	36, 45, 288, 356, 657
MboI	GATC	5 cut(s)	34, 43, 286, 354, 655
MboII	GAAGA	3 cut(s)	329, 502, 545
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	4 cut(s)	251, 304, 589, 637
MlyI	GAGTC	3 cut(s)	82, 266, 470
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	7 cut(s)	130, 300, 317, 466, 529, 571, 655
Mph1103I	ATGCAT	1 cut(s)	22
MseI	TTAA	4 cut(s)	54, 249, 360, 500
MspR9I	CCNGG	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	166
NdeII	GATC	5 cut(s)	34, 43, 286, 354, 655
NlaIII	CATG	4 cut(s)	129, 247, 395, 662
NlaIV	GGNNCC	2 cut(s)	118, 216
NmuCI	GTSAC	1 cut(s)	131
NsiI	ATGCAT	1 cut(s)	22
NspI	RCATGY	1 cut(s)	247
PagI	TCATGA	1 cut(s)	658
PciI	ACATGT	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	176, 380
PflFI	GACNNNGTC	1 cut(s)	408
PkrI	GCNGC	4 cut(s)	168, 273, 390, 616
PleI	GAGTC	3 cut(s)	82, 265, 469
PpsI	GAGTC	3 cut(s)	82, 265, 469
PscI	ACATGT	1 cut(s)	243
PshBI	ATTAAT	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	2 cut(s)	118, 216
PspPI	GGNCC	1 cut(s)	555
PsyI	GACNNNGTC	1 cut(s)	408
RsaI	GTAC	2 cut(s)	216, 342
RsaNI	GTAC	2 cut(s)	215, 341
SaqAI	TTAA	4 cut(s)	54, 249, 360, 500
SatI	GCNGC	4 cut(s)	167, 272, 389, 615
Sau3AI	GATC	5 cut(s)	34, 43, 286, 354, 655
Sau96I	GGNCC	1 cut(s)	555
SchI	GAGTC	3 cut(s)	82, 266, 470
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	331
SexAI	ACCWGGT	1 cut(s)	71
SfaNI	GCATC	1 cut(s)	7
Sse9I	AATT	4 cut(s)	251, 304, 589, 637
SsiI	CCGC	1 cut(s)	167
SspMI	CTAG	2 cut(s)	47, 207
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	651
TaiI	ACGT	2 cut(s)	189, 232
TaqI	TCGA	1 cut(s)	464
TasI	AATT	4 cut(s)	251, 304, 589, 637
TatI	WGTACW	1 cut(s)	340
TauI	GCSGC	1 cut(s)	169
TfiI	GAWTC	2 cut(s)	176, 380
Tru1I	TTAA	4 cut(s)	54, 249, 360, 500
Tru9I	TTAA	4 cut(s)	54, 249, 360, 500
TscAI	CASTG	1 cut(s)	674
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	3 cut(s)	271, 388, 614
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	470
TspRI	CASTG	1 cut(s)	674
Tth111I	GACNNNGTC	1 cut(s)	408
VspI	ATTAAT	1 cut(s)	360
XapI	RAATTY	2 cut(s)	251, 589
XceI	RCATGY	1 cut(s)	247
XspI	CTAG	2 cut(s)	47, 207
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.