Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013734

Physical Location & Seq

Genomic Coordinates Reverse (-)

36492981 .. 36493481

Gene Structure 501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57066

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAGGATATCTACTCAATGCAAGATAATTACGTATCAGTTAGAATCCTTTCCTTTAATAGAAAAGAAGCATCAAATTTCCCATGATTCAGAAAATTTTCTCCGGGTTTCTTACCAAATTCTTCTAAAAGCTACCAATGGATTCTCTTCTGCAAGCTTGGTTGGTTCAGGCAGTTTTGGGTCTGTGTATAAAGGAGTCCTCGACCAAGGAGAAACAACAATTGCTGTCAAAGTACTCAACCTCGTTAATCGTGGAGCTTCCAAAAGTTTCTTTGCTGAGTGTGAGGCCTTGAGAAACATTAGACACCGTAATCTGTTGAAGGTACTTTCTGCATGTTCAGGTGTTAACTATCAAGGTGATCATGATTTCAAGGCCTTGATTTATGAGTTCATGGTTAATGGCGGCTTAGATGAGTGGTTGCAGCCAACTCAGGCAGTTGCTGAGACGATTGAGAGACCTAGGAGTTTGAGTTTTTTCTCAAAGGTTAAACATTGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

166

Amino Acids

18.63

Weight (kDa)

8.9

Isoelectric Point (pI)

28.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	50 - 155	8.3e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	53 - 145	3.4e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013734)

Species	Orthologous Gene IDs
malus_domestica	MD00G1048000.v1.1 MD01G1112000.v1.1 MD02G1223600.v1.1 MD02G1224200.v1.1 MD07G1090100.v1.1
pyrus_communis	pycom01g12160
rosa_chinensis	RchiOBHm_Chr1g0344191 RchiOBHm_Chr1g0369871 RchiOBHm_Chr4g0404351 RchiOBHm_Chr7g0203471
rosa_multiflora	Rmu_sc0000019.1_g000003 Rmu_ssc0000434.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253800 Rroxscaffold_4G00286950 Rroxscaffold_4G00287100
rosa_rugosa	Rorug01G0352900 Rorug04G0040900 Rorug07G0076100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	402
AcsI	RAATTY	3 cut(s)	75, 94, 117
AfaI	GTAC	2 cut(s)	234, 324
AgsI	TTSAA	2 cut(s)	319, 370
AluBI	AGCT	3 cut(s)	131, 156, 257
AluI	AGCT	3 cut(s)	131, 156, 257
Alw26I	GTCTC	2 cut(s)	437, 448
AlwNI	CAGNNNCTG	1 cut(s)	440
AoxI	GGCC	2 cut(s)	285, 372
ApeKI	GCWGC	1 cut(s)	421
ApoI	RAATTY	3 cut(s)	75, 94, 117
Asp700I	GAANNNNTTC	2 cut(s)	48, 96
AspA2I	CCTAGG	1 cut(s)	458
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	368
AvrII	CCTAGG	1 cut(s)	458
BbvI	GCAGC	1 cut(s)	433
BclI	TGATCA	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	437, 448
BfaI	CTAG	1 cut(s)	459
BisI	GCNGC	2 cut(s)	403, 422
BlnI	CCTAGG	1 cut(s)	458
BlsI	GCNGC	2 cut(s)	404, 423
BmcAI	AGTACT	1 cut(s)	234
Bme1390I	CCNGG	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	79
BpuEI	CTTGAG	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	104
BsaAI	YACGTR	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	448
BsaJI	CCNNGG	2 cut(s)	205, 458
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bse3DI	GCAATG	1 cut(s)	490
BseDI	CCNNGG	2 cut(s)	205, 458
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	3 cut(s)	267, 432, 443
BseXI	GCAGC	1 cut(s)	433
BshFI	GGCC	2 cut(s)	287, 374
BsiSI	CCGG	1 cut(s)	103
BsmAI	GTCTC	2 cut(s)	437, 448
BsmBI	CGTCTC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	287, 374
Bso31I	GGTCTC	1 cut(s)	448
Bsp143I	GATC	1 cut(s)	358
BspACI	CCGC	1 cut(s)	402
BspANI	GGCC	2 cut(s)	287, 374
BspCNI	CTCAG	3 cut(s)	268, 433, 442
BspHI	TCATGA	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	490
BssECI	CCNNGG	2 cut(s)	205, 458
BssMI	GATC	1 cut(s)	358
BssT1I	CCWWGG	2 cut(s)	205, 458
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	1 cut(s)	151
BstBAI	YACGTR	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	4 cut(s)	276, 406, 429, 441
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	2 cut(s)	437, 448
BstMBI	GATC	1 cut(s)	358
BstNSI	RCATGY	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	102
BstSNI	TACGTA	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	433
BsuRI	GGCC	2 cut(s)	287, 374
Cac8I	GCNNGC	1 cut(s)	154
CaiI	CAGNNNCTG	1 cut(s)	440
CciI	TCATGA	1 cut(s)	361
Csp6I	GTAC	2 cut(s)	233, 323
CviAII	CATG	4 cut(s)	83, 333, 362, 391
CviJI	RGCY	7 cut(s)	131, 156, 257, 287, 374, 405, 424
CviKI_1	RGCY	7 cut(s)	131, 156, 257, 287, 374, 405, 424
CviQI	GTAC	2 cut(s)	233, 323
DdeI	CTNAG	4 cut(s)	276, 406, 429, 441
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco105I	TACGTA	1 cut(s)	33
Eco130I	CCWWGG	2 cut(s)	205, 458
Eco147I	AGGCCT	2 cut(s)	287, 374
Eco31I	GGTCTC	1 cut(s)	448
Eco32I	GATATC	1 cut(s)	9
EcoRV	GATATC	1 cut(s)	9
EcoT14I	CCWWGG	2 cut(s)	205, 458
ErhI	CCWWGG	2 cut(s)	205, 458
Esp3I	CGTCTC	1 cut(s)	437
FaeI	CATG	4 cut(s)	86, 336, 365, 394
FaiI	YATR	6 cut(s)	84, 189, 334, 363, 384, 392
FatI	CATG	4 cut(s)	82, 332, 361, 390
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	403, 422
Fsp4HI	GCNGC	2 cut(s)	403, 422
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	2 cut(s)	403, 422
HaeIII	GGCC	2 cut(s)	287, 374
HapII	CCGG	1 cut(s)	103
Hin1II	CATG	4 cut(s)	86, 336, 365, 394
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	4 cut(s)	44, 86, 141, 195
HpaI	GTTAAC	1 cut(s)	346
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	4 cut(s)	21, 152, 332, 421
HpyF3I	CTNAG	4 cut(s)	276, 406, 429, 441
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	4 cut(s)	86, 336, 365, 394
Ksp22I	TGATCA	1 cut(s)	358
KspAI	GTTAAC	1 cut(s)	346
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	4 cut(s)	116, 153, 324, 416
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	32
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	2 cut(s)	113, 138
MfeI	CAATTG	1 cut(s)	219
MluCI	AATT	5 cut(s)	27, 75, 94, 117, 219
MlyI	GAGTC	1 cut(s)	204
MnlI	CCTC	3 cut(s)	209, 251, 277
MroXI	GAANNNNTTC	2 cut(s)	48, 96
MseI	TTAA	5 cut(s)	56, 246, 345, 396, 486
MspI	CCGG	1 cut(s)	103
MspR9I	CCNGG	1 cut(s)	104
MunI	CAATTG	1 cut(s)	219
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	4 cut(s)	86, 336, 365, 394
NspI	RCATGY	1 cut(s)	336
PagI	TCATGA	1 cut(s)	361
PceI	AGGCCT	2 cut(s)	287, 374
PdmI	GAANNNNTTC	2 cut(s)	48, 96
PfeI	GAWTC	3 cut(s)	44, 86, 141
PkrI	GCNGC	2 cut(s)	404, 423
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
Ppu21I	YACGTR	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	440
RsaI	GTAC	2 cut(s)	234, 324
RsaNI	GTAC	2 cut(s)	233, 323
SaqAI	TTAA	5 cut(s)	56, 246, 345, 396, 486
SatI	GCNGC	2 cut(s)	403, 422
Sau3AI	GATC	1 cut(s)	358
ScaI	AGTACT	1 cut(s)	234
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	1 cut(s)	104
SfaNI	GCATC	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
SnaBI	TACGTA	1 cut(s)	33
Sse9I	AATT	5 cut(s)	27, 75, 94, 117, 219
SseBI	AGGCCT	2 cut(s)	287, 374
SsiI	CCGC	1 cut(s)	402
SspMI	CTAG	1 cut(s)	459
StuI	AGGCCT	2 cut(s)	287, 374
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	2 cut(s)	205, 458
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	201
TasI	AATT	5 cut(s)	27, 75, 94, 117, 219
TatI	WGTACW	1 cut(s)	232
TauI	GCSGC	1 cut(s)	405
TfiI	GAWTC	3 cut(s)	44, 86, 141
Tru1I	TTAA	5 cut(s)	56, 246, 345, 396, 486
Tru9I	TTAA	5 cut(s)	56, 246, 345, 396, 486
TseI	GCWGC	1 cut(s)	421
TspDTI	ATGAA	1 cut(s)	379
XapI	RAATTY	3 cut(s)	75, 94, 117
XceI	RCATGY	1 cut(s)	336
XmaJI	CCTAGG	1 cut(s)	458
XmnI	GAANNNNTTC	2 cut(s)	48, 96
XspI	CTAG	1 cut(s)	459
ZrmI	AGTACT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.