Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0013734

Physical Location & Seq

Genomic Coordinates Forward (+)

26263316 .. 26263558

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1224200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGGCAGTTTTGAATCTGTTTATAAAGGAGTTCTTGGGCAAGGTGAAACAACAATTGCTGTCAAAGTATTCAACCTCATCCGTCGCGGAGCTTACAAAAGTTTTATTTCTGAGTGTGAGGTTTTGAGGAATATTAAACACTGTAATCTTTTCAAGGTACTATCAGCCTGTTCTAGTTTTGATTATCACGGTCATGATTTCAAGGCCTTAATTTATGAGTTCATGGTTAATGGGAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

81

Amino Acids

9.05

Weight (kDa)

8.51

Isoelectric Point (pI)

30.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 79	2.6e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 79	3e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013734)

Species	Orthologous Gene IDs
malus_domestica	MD00G1048000.v1.1 MD01G1112000.v1.1 MD02G1223600.v1.1 MD02G1224200.v1.1 MD07G1090100.v1.1
pyrus_communis	pycom01g12160
rosa_chinensis	RchiOBHm_Chr1g0344191 RchiOBHm_Chr1g0369871 RchiOBHm_Chr4g0404351 RchiOBHm_Chr7g0203471
rosa_multiflora	Rmu_sc0000019.1_g000003 Rmu_ssc0000434.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253800 Rroxscaffold_4G00286950 Rroxscaffold_4G00287100
rosa_rugosa	Rorug01G0352900 Rorug04G0040900 Rorug07G0076100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
AccII	CGCG	1 cut(s)	87
AciI	CCGC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	159
AgsI	TTSAA	4 cut(s)	14, 73, 154, 202
AluBI	AGCT	2 cut(s)	92, 237
AluI	AGCT	2 cut(s)	92, 237
AoxI	GGCC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	56
BfaI	CTAG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	102
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	206
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	87
BspHI	TCATGA	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	143, 191
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	1 cut(s)	87
BstUI	CGCG	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	139
CciI	TCATGA	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	2 cut(s)	194, 223
CviJI	RGCY	4 cut(s)	92, 167, 206, 237
CviKI_1	RGCY	4 cut(s)	92, 167, 206, 237
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	111
Eco147I	AGGCCT	1 cut(s)	206
FaeI	CATG	2 cut(s)	197, 226
FaiI	YATR	4 cut(s)	24, 195, 216, 224
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FatI	CATG	2 cut(s)	193, 222
FokI	GGATG	1 cut(s)	65
FspBI	CTAG	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	206
Hin1II	CATG	2 cut(s)	197, 226
HinfI	GANTC	1 cut(s)	14
HphI	GGTGA	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	1 cut(s)	194
Hpy99I	CGWCG	1 cut(s)	87
HpyCH4III	ACNGT	2 cut(s)	143, 191
HpyF3I	CTNAG	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	197, 226
LmnI	GCTCC	2 cut(s)	89, 234
LpnPI	CCDG	1 cut(s)	181
MaeI	CTAG	1 cut(s)	174
MfeI	CAATTG	1 cut(s)	54
MluCI	AATT	2 cut(s)	54, 210
MnlI	CCTC	3 cut(s)	86, 112, 120
MseI	TTAA	3 cut(s)	135, 209, 228
MslI	CAYNNNNRTG	1 cut(s)	192
MunI	CAATTG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	87
NlaIII	CATG	2 cut(s)	197, 226
PagI	TCATGA	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	14
PsiI	TTATAA	1 cut(s)	24
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	135, 209, 228
SetI	ASST	6 cut(s)	46, 78, 94, 123, 159, 239
SmiMI	CAYNNNNRTG	1 cut(s)	192
Sse9I	AATT	2 cut(s)	54, 210
SseBI	AGGCCT	1 cut(s)	206
SsiI	CCGC	1 cut(s)	87
SspI	AATATT	1 cut(s)	133
SspMI	CTAG	1 cut(s)	174
StuI	AGGCCT	1 cut(s)	206
TaaI	ACNGT	2 cut(s)	143, 191
TasI	AATT	2 cut(s)	54, 210
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	3 cut(s)	135, 209, 228
Tru9I	TTAA	3 cut(s)	135, 209, 228
TscAI	CASTG	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	211
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	146
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.