Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013734

Physical Location & Seq

Genomic Coordinates Reverse (-)

47866117 .. 47866842

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00253800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTCAATCAGTGTCCAATTGCTAGGAAATAATCTCAATGGCAGCATCCCTTCGAGCCTGGGAAAATGCCATAGGTTGCTAGAATTGGATCTTGCTCAAAATAACCTTGACGGCACAATACCTCAACAACTACTCATTGGCCTTCCCTTATCAATTTATTTGTACTTTTCGGAAAATCACTTTAGTGGGTCCCTGCCTGTGGAGGTTGGAAAGTTGAAGGCTCTAAGTGTACAAGACATTCTTGATAACATGTTATCTGGAGAATTTCCCAATAGCCTTGGTGGTTGTGAGAATTTAGAAGCCCTACACTTGCAAGACAACTTCTTCAAGGGTCCAATTCCTTCATCTATGAGTGCATTGAGAGGGATTCTAGTGTTAGACCTTTCTCGCAACAATTTTTTTGGGGAGAAGTGCATGCATATTAAAGGAGTTCTAGATGATGGTAGAGTTGTTGCTGTGAAGGTGTTTAACATGTTACACAGGGGAGCTTCAAAGAGCTTCATAGCTGAATGTGAGGCACTGAGAAATATCAGGCATCGAAATCTAGTCAAAATTATAAGTGCATGTTCATCTATTGATTTCCATGGAAATGATTTTAAGGCTCTAGTTTATGAGGCACAAAGGATAGGCAGAAAAATGTGGAGTGCTTGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

218

Amino Acids

24.07

Weight (kDa)

7.7

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013734)

Species	Orthologous Gene IDs
malus_domestica	MD00G1048000.v1.1 MD01G1112000.v1.1 MD02G1223600.v1.1 MD02G1224200.v1.1 MD07G1090100.v1.1
pyrus_communis	pycom01g12160
rosa_chinensis	RchiOBHm_Chr1g0344191 RchiOBHm_Chr1g0369871 RchiOBHm_Chr4g0404351 RchiOBHm_Chr7g0203471
rosa_multiflora	Rmu_sc0000019.1_g000003 Rmu_ssc0000434.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253800 Rroxscaffold_4G00286950 Rroxscaffold_4G00287100
rosa_rugosa	Rorug01G0352900 Rorug04G0040900 Rorug07G0076100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	557
AclWI	GGATC	1 cut(s)	96
AcsI	RAATTY	2 cut(s)	263, 292
AfaI	GTAC	2 cut(s)	164, 231
AfiI	CCNNNNNNNGG	1 cut(s)	199
AflIII	ACRYGT	2 cut(s)	249, 471
AgsI	TTSAA	3 cut(s)	217, 328, 492
AjnI	CCWGG	1 cut(s)	57
AleI	CACNNNNGTG	1 cut(s)	183
AluBI	AGCT	3 cut(s)	488, 498, 506
AluI	AGCT	3 cut(s)	488, 498, 506
AlwI	GGATC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	42
ApoI	RAATTY	2 cut(s)	263, 292
AspS9I	GGNCC	2 cut(s)	189, 332
AvaII	GGWCC	2 cut(s)	189, 332
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	434
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	59
BfaI	CTAG	6 cut(s)	23, 80, 371, 434, 545, 605
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	2 cut(s)	189, 332
BmgT120I	GGNCC	2 cut(s)	189, 332
BmiI	GGNNCC	3 cut(s)	190, 191, 333
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	54, 544
BpmI	CTGGAG	1 cut(s)	279
BsaJI	CCNNGG	3 cut(s)	58, 277, 583
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	3 cut(s)	58, 277, 583
BseGI	GGATG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	512
BseXI	GCAGC	1 cut(s)	54
BshFI	GGCC	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	141
Bsp1407I	TGTACA	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	88
Bsp19I	CCATGG	1 cut(s)	583
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	513
BspLI	GGNNCC	3 cut(s)	190, 191, 333
BspPI	GGATC	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	229
BssECI	CCNNGG	3 cut(s)	58, 277, 583
BssMI	GATC	1 cut(s)	88
BssT1I	CCWWGG	2 cut(s)	277, 583
Bst2UI	CCWGG	1 cut(s)	59
BstAUI	TGTACA	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	2 cut(s)	224, 521
BstDSI	CCRYGG	1 cut(s)	583
BstF5I	GGATG	1 cut(s)	45
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	4 cut(s)	253, 418, 475, 567
BstSCI	CCNGG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	583
BtsCI	GGATG	1 cut(s)	45
BtsIMutI	CAGTG	2 cut(s)	16, 518
Cac8I	GCNNGC	1 cut(s)	416
Cfr13I	GGNCC	2 cut(s)	189, 332
Csp6I	GTAC	2 cut(s)	163, 230
CviAII	CATG	5 cut(s)	250, 415, 472, 564, 584
CviJI	RGCY	9 cut(s)	57, 141, 221, 276, 302, 488, 498, 506, 602
CviKI_1	RGCY	9 cut(s)	57, 141, 221, 276, 302, 488, 498, 506, 602
CviQI	GTAC	2 cut(s)	163, 230
DdeI	CTNAG	2 cut(s)	224, 521
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eco130I	CCWWGG	2 cut(s)	277, 583
Eco47I	GGWCC	2 cut(s)	189, 332
EcoO109I	RGGNCCY	1 cut(s)	189
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	2 cut(s)	277, 583
EcoT22I	ATGCAT	1 cut(s)	420
ErhI	CCWWGG	2 cut(s)	277, 583
FaeI	CATG	5 cut(s)	253, 418, 475, 567, 587
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	5 cut(s)	249, 414, 471, 563, 583
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	43
FspBI	CTAG	6 cut(s)	23, 80, 371, 434, 545, 605
GluI	GCNGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	141
Hin1II	CATG	5 cut(s)	253, 418, 475, 567, 587
HinfI	GANTC	1 cut(s)	367
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	4 cut(s)	242, 258, 434, 654
Hpy8I	GTNNAC	1 cut(s)	230
HpyAV	CCTTC	5 cut(s)	60, 152, 211, 351, 454
HpyCH4V	TGCA	5 cut(s)	313, 356, 414, 418, 563
HpyF3I	CTNAG	2 cut(s)	224, 521
Hsp92II	CATG	5 cut(s)	253, 418, 475, 567, 587
KflI	GGGWCCC	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	485
LpnPI	CCDG	7 cut(s)	44, 71, 206, 210, 243, 466, 517
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	2 cut(s)	54, 544
MaeI	CTAG	6 cut(s)	23, 80, 371, 434, 545, 605
MaeIII	GTNAC	1 cut(s)	474
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	1 cut(s)	316
MfeI	CAATTG	1 cut(s)	17
MflI	RGATCY	1 cut(s)	88
MluCI	AATT	8 cut(s)	17, 83, 153, 263, 292, 336, 394, 552
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	5 cut(s)	132, 196, 356, 508, 607
Mph1103I	ATGCAT	1 cut(s)	420
MseI	TTAA	3 cut(s)	423, 468, 597
MslI	CAYNNNNRTG	2 cut(s)	183, 588
MspR9I	CCNGG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	59
NcoI	CCATGG	1 cut(s)	583
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	5 cut(s)	253, 418, 475, 567, 587
NlaIV	GGNNCC	3 cut(s)	190, 191, 333
NsiI	ATGCAT	1 cut(s)	420
NspI	RCATGY	4 cut(s)	253, 418, 475, 567
OliI	CACNNNNGTG	1 cut(s)	183
PaeI	GCATGC	1 cut(s)	418
PciI	ACATGT	2 cut(s)	249, 471
PfeI	GAWTC	1 cut(s)	367
PkrI	GCNGC	1 cut(s)	44
PpuMI	RGGWCCY	1 cut(s)	189
PscI	ACATGT	2 cut(s)	249, 471
PsiI	TTATAA	1 cut(s)	557
Psp5II	RGGWCCY	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	3 cut(s)	190, 191, 333
PspPI	GGNCC	2 cut(s)	189, 332
PspPPI	RGGWCCY	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	2 cut(s)	164, 231
RsaNI	GTAC	2 cut(s)	163, 230
RseI	CAYNNNNRTG	2 cut(s)	183, 588
SaqAI	TTAA	3 cut(s)	423, 468, 597
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	2 cut(s)	189, 332
ScrFI	CCNGG	1 cut(s)	59
SetI	ASST	9 cut(s)	77, 108, 124, 207, 384, 465, 490, 500, 508
SfaNI	GCATC	2 cut(s)	54, 544
SinI	GGWCC	2 cut(s)	189, 332
SmiMI	CAYNNNNRTG	2 cut(s)	183, 588
SphI	GCATGC	1 cut(s)	418
Sse9I	AATT	8 cut(s)	17, 83, 153, 263, 292, 336, 394, 552
SspMI	CTAG	6 cut(s)	23, 80, 371, 434, 545, 605
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	2 cut(s)	277, 583
TaqI	TCGA	2 cut(s)	53, 538
TasI	AATT	8 cut(s)	17, 83, 153, 263, 292, 336, 394, 552
TatI	WGTACW	2 cut(s)	162, 229
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	3 cut(s)	423, 468, 597
Tru9I	TTAA	3 cut(s)	423, 468, 597
TscAI	CASTG	2 cut(s)	16, 525
TseI	GCWGC	1 cut(s)	42
TspDTI	ATGAA	3 cut(s)	333, 490, 558
TspRI	CASTG	2 cut(s)	16, 525
VpaK11BI	GGWCC	2 cut(s)	189, 332
XapI	RAATTY	2 cut(s)	263, 292
XbaI	TCTAGA	1 cut(s)	433
XceI	RCATGY	4 cut(s)	253, 418, 475, 567
XspI	CTAG	6 cut(s)	23, 80, 371, 434, 545, 605
Zsp2I	ATGCAT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.