Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0013723

Physical Location & Seq

Genomic Coordinates Forward (+)

34443235 .. 34443507

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1156600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 144 bp

ATGCGGCCAAAGGACTTTGGGTATATCAACAATTGCCTGGCAGGGCGTCGATTCACTTTCGATGAGCTCGGAGAGCCCTTAGCTAAAGATGAATCAGATTGCGACCGGATGTTGAAGCTGTCTTCATATGTGAGTCATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006726 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010033 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016684 GO:0019221 GO:0019725 GO:0023052 GO:0033209 GO:0034097 GO:0034612 GO:0042221 GO:0042440 GO:0042441 GO:0042592 GO:0043324 GO:0043473 GO:0043474 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046148 GO:0047134 GO:0048066 GO:0048069 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071345 GO:0071356 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF953

Protein Analysis

48

Amino Acids

5.38

Weight (kDa)

5.61

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013723)

Species	Orthologous Gene IDs
malus_domestica	MD00G1026300.v1.1 MD00G1156600.v1.1 MD01G1110200.v1.1 MD02G1250300.v1.1 MD03G1186300.v1.1 MD05G1144200.v1.1 MD06G1079400.v1.1 MD08G1169100.v1.1 MD09G1023200.v1.1 MD10G1200500.v1.1 MD11G1050500.v1.1 MD14G1153500.v1.1
pyrus_communis	pycom04g18140 pycom11g24920 pycom12g10950 pycom16g22910 pycom16g24020 pycom420g00920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	4
AcoI	YGGCCR	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	3 cut(s)	67, 83, 118
AluI	AGCT	3 cut(s)	67, 83, 118
Alw21I	GWGCWC	1 cut(s)	69
AoxI	GGCC	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	69, 78
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	38
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	38
BmrFI	CCNGG	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	38
BseGI	GGATG	1 cut(s)	114
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	7
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	106
BsnI	GGCC	1 cut(s)	7
Bsp1286I	GDGCHC	2 cut(s)	69, 78
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	7
BssNI	GRCGYC	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	114
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	114
CseI	GACGC	1 cut(s)	35
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	6 cut(s)	7, 67, 76, 83, 118, 141
CviKI_1	RGCY	6 cut(s)	7, 67, 76, 83, 118, 141
DdeI	CTNAG	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	5
Ecl136II	GAGCTC	1 cut(s)	67
Eco24I	GRGCYC	2 cut(s)	69, 78
Eco53kI	GAGCTC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	36
EcoT38I	GRGCYC	2 cut(s)	69, 78
FaeI	CATG	1 cut(s)	140
FaiI	YATR	4 cut(s)	24, 127, 129, 138
FatI	CATG	1 cut(s)	136
FauNDI	CATATG	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	121
FriOI	GRGCYC	2 cut(s)	69, 78
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	7
HapII	CCGG	1 cut(s)	106
HgaI	GACGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	140
HinfI	GANTC	3 cut(s)	51, 92, 133
HpaII	CCGG	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	71, 97
Hpy99I	CGWCG	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	1 cut(s)	79
Hsp92I	GRCGYC	1 cut(s)	46
Hsp92II	CATG	1 cut(s)	140
LpnPI	CCDG	4 cut(s)	23, 27, 50, 119
MboII	GAAGA	1 cut(s)	114
MfeI	CAATTG	1 cut(s)	31
MhlI	GDGCHC	2 cut(s)	69, 78
MluCI	AATT	1 cut(s)	31
MlyI	GAGTC	1 cut(s)	142
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	73
NdeI	CATATG	1 cut(s)	127
NlaIII	CATG	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	51, 92
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
SacI	GAGCTC	1 cut(s)	69
SatI	GCNGC	1 cut(s)	5
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	2 cut(s)	69, 78
SetI	ASST	3 cut(s)	69, 85, 120
SgeI	CNNG	5 cut(s)	49, 50, 54, 80, 118
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	4
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	36
TaqI	TCGA	2 cut(s)	49, 60
TasI	AATT	1 cut(s)	31
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	51, 92
TspDTI	ATGAA	2 cut(s)	105, 114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.