Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0013723

Physical Location & Seq

Genomic Coordinates Forward (+)

22296318 .. 22296715

Gene Structure 398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1110200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCGGCCAAAGGACTTTGGGTATATCAACAATTGCTTGGCAGGGCGTCGATTCACTTTCGATGAGCTCGGAGAGCCTTTAGCTAAAGATGAATCAGATTGTGACCGGATGTTGAAGCTATCTTCATATGTCATGACTGAGTATCACGACAGACTGCGAAAGGCTGAGCGGTGCAAGGTGAAACTGAAAGAGAATAAGCAGCTTGTGAATGATGCCAGGAAGACGAGCAAAGCTTTGGCTGATGCCATTGAAGTCAGGGATCAACATTTTGAGAGTTTGAAGAGGCGGAATGGTGAGAACTTGAGACTCAAAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

106

Amino Acids

12.36

Weight (kDa)

9.37

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013723)

Species	Orthologous Gene IDs
malus_domestica	MD00G1026300.v1.1 MD00G1156600.v1.1 MD01G1110200.v1.1 MD02G1250300.v1.1 MD03G1186300.v1.1 MD05G1144200.v1.1 MD06G1079400.v1.1 MD08G1169100.v1.1 MD09G1023200.v1.1 MD10G1200500.v1.1 MD11G1050500.v1.1 MD14G1153500.v1.1
pyrus_communis	pycom04g18140 pycom11g24920 pycom12g10950 pycom16g22910 pycom16g24020 pycom420g00920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	169
AciI	CCGC	3 cut(s)	4, 169, 286
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	46
AgsI	TTSAA	3 cut(s)	115, 251, 280
AjnI	CCWGG	1 cut(s)	215
AluBI	AGCT	5 cut(s)	67, 83, 118, 202, 233
AluI	AGCT	5 cut(s)	67, 83, 118, 202, 233
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	199
AsuHPI	GGTGA	2 cut(s)	190, 305
BanII	GRGCYC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	298
BisI	GCNGC	2 cut(s)	5, 200
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	2 cut(s)	6, 201
Bme1390I	CCNGG	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	217
BmsI	GCATC	2 cut(s)	202, 232
BpiI	GAAGAC	1 cut(s)	227
Bpu1102I	GCTNAGC	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	129, 156
BseXI	GCAGC	1 cut(s)	211
BshFI	GGCC	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	259
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	3 cut(s)	4, 169, 286
BspANI	GGCC	1 cut(s)	7
BspCNI	CTCAG	2 cut(s)	130, 157
BspHI	TCATGA	1 cut(s)	132
BspPI	GGATC	1 cut(s)	267
BsrBI	CCGCTC	1 cut(s)	169
BssMI	GATC	1 cut(s)	259
BssNI	GRCGYC	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	275
BstACI	GRCGYC	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	138, 165
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	114
CciI	TCATGA	1 cut(s)	132
CseI	GACGC	1 cut(s)	35
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	9 cut(s)	7, 67, 76, 83, 118, 164, 202, 233, 239
CviKI_1	RGCY	9 cut(s)	7, 67, 76, 83, 118, 164, 202, 233, 239
DdeI	CTNAG	2 cut(s)	138, 165
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	5
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
EciI	GGCGGA	1 cut(s)	301
Ecl136II	GAGCTC	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	69
Eco53kI	GAGCTC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	215
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	1 cut(s)	136
FaiI	YATR	5 cut(s)	24, 127, 129, 134, 316
FatI	CATG	1 cut(s)	132
FauNDI	CATATG	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	5, 200
FokI	GGATG	1 cut(s)	121
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	5, 200
GluI	GCNGC	2 cut(s)	5, 200
HaeIII	GGCC	1 cut(s)	7
HapII	CCGG	1 cut(s)	106
HgaI	GACGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	3 cut(s)	51, 92, 306
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	2 cut(s)	190, 305
Hpy188I	TCNGA	2 cut(s)	71, 97
Hpy188III	TCNNGA	2 cut(s)	133, 146
Hpy99I	CGWCG	1 cut(s)	51
HpyCH4V	TGCA	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	2 cut(s)	138, 165
Hsp92I	GRCGYC	1 cut(s)	46
Hsp92II	CATG	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	259
LpnPI	CCDG	5 cut(s)	27, 119, 202, 229, 241
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	2 cut(s)	202, 232
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	261
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	1 cut(s)	259
MboII	GAAGA	3 cut(s)	114, 232, 292
MfeI	CAATTG	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	1 cut(s)	31
MlyI	GAGTC	1 cut(s)	300
MnlI	CCTC	1 cut(s)	276
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	217
MunI	CAATTG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	217
MwoI	GCNNNNNNNGC	1 cut(s)	73
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	101
PagI	TCATGA	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	51, 92
PkrI	GCNGC	2 cut(s)	6, 201
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
SacI	GAGCTC	1 cut(s)	69
SatI	GCNGC	2 cut(s)	5, 200
Sau3AI	GATC	1 cut(s)	259
SchI	GAGTC	1 cut(s)	300
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	6 cut(s)	69, 85, 120, 180, 204, 235
SfaNI	GCATC	2 cut(s)	202, 232
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	3 cut(s)	4, 169, 286
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	215
TaqI	TCGA	2 cut(s)	49, 60
TasI	AATT	1 cut(s)	31
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	51, 92
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	2 cut(s)	105, 114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.