Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013723

Physical Location & Seq

Genomic Coordinates Forward (+)

20156760 .. 20157804

Gene Structure 1045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1169100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGCAACCAAGTAGTTTTAGGTATGTCAATAATTGCCTGGCAGGGCGTCAATCCACTGTTGAAGAGCTTGCCGAGATGCTAGATAAGAACGAATCAGATCGTGACCAGATGATAAGGCTATTTTCTCATGTCATGATCGAGTATGACGACATATTACAAGAGGTCAAGCGGTACACGGCAAAGTTTAAAAAGATTAAGCAGCTTGTGAATGACGTCAGAAAAAACGAGCAAAGCTTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

81

Amino Acids

9.5

Weight (kDa)

6.57

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013723)

Species	Orthologous Gene IDs
malus_domestica	MD00G1026300.v1.1 MD00G1156600.v1.1 MD01G1110200.v1.1 MD02G1250300.v1.1 MD03G1186300.v1.1 MD05G1144200.v1.1 MD06G1079400.v1.1 MD08G1169100.v1.1 MD09G1023200.v1.1 MD10G1200500.v1.1 MD11G1050500.v1.1 MD14G1153500.v1.1
pyrus_communis	pycom04g18140 pycom11g24920 pycom12g10950 pycom16g22910 pycom16g24020 pycom420g00920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
AciI	CCGC	1 cut(s)	169
AcyI	GRCGYC	2 cut(s)	46, 213
AfaI	GTAC	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	3 cut(s)	67, 202, 234
AluI	AGCT	3 cut(s)	67, 202, 234
ApeKI	GCWGC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	211
BceAI	ACGGC	1 cut(s)	192
BciT130I	CCWGG	1 cut(s)	38
BfaI	CTAG	1 cut(s)	80
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	38
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	66
BsaHI	GRCGYC	2 cut(s)	46, 213
BseBI	CCWGG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	97, 135
BspACI	CCGC	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	132
BspQI	GCTCTTC	1 cut(s)	57
BssMI	GATC	2 cut(s)	97, 135
BssNI	GRCGYC	2 cut(s)	46, 213
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	2 cut(s)	46, 213
BstC8I	GCNNGC	1 cut(s)	69
BstKTI	GATC	2 cut(s)	100, 138
BstMBI	GATC	2 cut(s)	97, 135
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	69
CciI	TCATGA	1 cut(s)	132
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	2 cut(s)	128, 133
CviJI	RGCY	5 cut(s)	67, 118, 202, 234, 240
CviKI_1	RGCY	5 cut(s)	67, 118, 202, 234, 240
CviQI	GTAC	1 cut(s)	172
DpnI	GATC	2 cut(s)	99, 137
DpnII	GATC	2 cut(s)	97, 135
DraI	TTTAAA	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	36
FaeI	CATG	2 cut(s)	131, 136
FaiI	YATR	5 cut(s)	24, 129, 134, 144, 152
FatI	CATG	2 cut(s)	127, 132
Fnu4HI	GCNGC	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	200
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	1 cut(s)	200
HgaI	GACGC	1 cut(s)	35
Hin1I	GRCGYC	2 cut(s)	46, 213
Hin1II	CATG	2 cut(s)	131, 136
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	2 cut(s)	97, 218
Hpy188III	TCNNGA	2 cut(s)	101, 133
Hpy8I	GTNNAC	1 cut(s)	174
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	1 cut(s)	4
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	2 cut(s)	46, 213
Hsp92II	CATG	2 cut(s)	131, 136
Kzo9I	GATC	2 cut(s)	97, 135
LguI	GCTCTTC	1 cut(s)	57
LpnPI	CCDG	4 cut(s)	23, 27, 50, 119
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	2 cut(s)	99, 137
MboI	GATC	2 cut(s)	97, 135
MboII	GAAGA	1 cut(s)	74
MluCI	AATT	1 cut(s)	31
MnlI	CCTC	1 cut(s)	154
MseI	TTAA	2 cut(s)	186, 195
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
NdeII	GATC	2 cut(s)	97, 135
NlaIII	CATG	2 cut(s)	131, 136
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	101
PagI	TCATGA	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	186, 195
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	2 cut(s)	97, 135
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	6 cut(s)	23, 69, 165, 204, 216, 236
SfaNI	GCATC	1 cut(s)	66
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	169
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	2 cut(s)	186, 195
Tru9I	TTAA	2 cut(s)	186, 195
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	101
TspRI	CASTG	1 cut(s)	61
XspI	CTAG	1 cut(s)	80
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.