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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1026300.v1.1 MD00G1156600.v1.1 MD01G1110200.v1.1 MD02G1250300.v1.1 MD03G1186300.v1.1 MD05G1144200.v1.1 MD06G1079400.v1.1 MD08G1169100.v1.1 MD09G1023200.v1.1 MD10G1200500.v1.1 MD11G1050500.v1.1 MD14G1153500.v1.1 |
| pyrus_communis | pycom04g18140 pycom11g24920 pycom12g10950 pycom16g22910 pycom16g24020 pycom420g00920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 332, 385, 1232 |
| AccBSI | CCGCTC | 1 cut(s) | 1012 |
| AccII | CGCG | 3 cut(s) | 328, 847, 1582 |
| AciI | CCGC | 6 cut(s) | 328, 578, 781, 847, 1012, 1582 |
| AclWI | GGATC | 3 cut(s) | 764, 1475, 1557 |
| AcoI | YGGCCR | 3 cut(s) | 848, 978, 1380 |
| AcsI | RAATTY | 1 cut(s) | 588 |
| AcuI | CTGAAG | 2 cut(s) | 1049, 1118 |
| AcyI | GRCGYC | 1 cut(s) | 889 |
| AfaI | GTAC | 3 cut(s) | 268, 437, 1016 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 537, 636, 637, 787, 826, 1099, 1215 |
| AflII | CTTAAG | 4 cut(s) | 406, 644, 1151, 1303 |
| AflIII | ACRYGT | 1 cut(s) | 217 |
| AgsI | TTSAA | 3 cut(s) | 958, 1123, 1364 |
| AjiI | CACGTC | 1 cut(s) | 218 |
| AjnI | CCWGG | 3 cut(s) | 465, 759, 772 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1536, 1568 |
| AluBI | AGCT | 9 cut(s) | 358, 415, 809, 910, 926, 961, 1045, 1119, 1355 |
| AluI | AGCT | 9 cut(s) | 358, 415, 809, 910, 926, 961, 1045, 1119, 1355 |
| Alw21I | GWGCWC | 3 cut(s) | 753, 912, 1348 |
| Alw26I | GTCTC | 1 cut(s) | 1454 |
| AlwI | GGATC | 3 cut(s) | 764, 1475, 1557 |
| AoxI | GGCC | 6 cut(s) | 650, 678, 848, 978, 1056, 1380 |
| ApeKI | GCWGC | 5 cut(s) | 692, 695, 1042, 1286, 1488 |
| ApoI | RAATTY | 1 cut(s) | 588 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 411, 443 |
| AspLEI | GCGC | 1 cut(s) | 60 |
| AspS9I | GGNCC | 3 cut(s) | 640, 650, 1057 |
| AsuHPI | GGTGA | 2 cut(s) | 1148, 1553 |
| AsuII | TTCGAA | 1 cut(s) | 1417 |
| AvaII | GGWCC | 1 cut(s) | 640 |
| AxyI | CCTNAGG | 1 cut(s) | 1145 |
| BaeGI | GKGCMC | 2 cut(s) | 335, 390 |
| BanI | GGYRCC | 3 cut(s) | 332, 385, 1232 |
| BanII | GRGCYC | 2 cut(s) | 912, 921 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 558, 590 |
| BbsI | GAAGAC | 3 cut(s) | 573, 671, 957 |
| Bbv12I | GWGCWC | 3 cut(s) | 753, 912, 1348 |
| BbvI | GCAGC | 5 cut(s) | 679, 682, 1054, 1273, 1500 |
| BccI | CCATC | 8 cut(s) | 39, 344, 619, 629, 1223, 1372, 1397, 1565 |
| BceAI | ACGGC | 3 cut(s) | 665, 683, 1367 |
| BciT130I | CCWGG | 3 cut(s) | 467, 761, 774 |
| BciVI | GTATCC | 2 cut(s) | 498, 1216 |
| BcoDI | GTCTC | 1 cut(s) | 1454 |
| BfaI | CTAG | 2 cut(s) | 525, 1485 |
| BfmI | CTRYAG | 1 cut(s) | 240 |
| BfrI | CTTAAG | 4 cut(s) | 406, 644, 1151, 1303 |
| BfuI | GTATCC | 2 cut(s) | 498, 1216 |
| BisI | GCNGC | 6 cut(s) | 693, 696, 848, 1043, 1287, 1489 |
| BlsI | GCNGC | 6 cut(s) | 694, 697, 849, 1044, 1288, 1490 |
| Bme1390I | CCNGG | 3 cut(s) | 467, 761, 774 |
| Bme18I | GGWCC | 1 cut(s) | 640 |
| BmgBI | CACGTC | 1 cut(s) | 218 |
| BmgT120I | GGNCC | 3 cut(s) | 640, 650, 1057 |
| BmiI | GGNNCC | 8 cut(s) | 334, 387, 609, 641, 651, 719, 778, 1234 |
| BmrFI | CCNGG | 3 cut(s) | 467, 761, 774 |
| BmsI | GCATC | 4 cut(s) | 45, 1453, 1513, 1549 |
| BoxI | GACNNNNGTC | 3 cut(s) | 625, 671, 1466 |
| BpiI | GAAGAC | 3 cut(s) | 573, 671, 957 |
| BpmI | CTGGAG | 2 cut(s) | 690, 1277 |
| Bpu10I | CCTNAGC | 3 cut(s) | 210, 922, 927 |
| Bpu14I | TTCGAA | 1 cut(s) | 1417 |
| BpuEI | CTTGAG | 2 cut(s) | 853, 1332 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1443 |
| BsaHI | GRCGYC | 1 cut(s) | 889 |
| BsaJI | CCNNGG | 6 cut(s) | 466, 601, 821, 1110, 1197, 1209 |
| BsaWI | WCCGGW | 1 cut(s) | 948 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 26 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 537, 636, 637, 787, 826, 1099, 1215 |
| Bse1I | ACTGG | 4 cut(s) | 82, 548, 673, 1260 |
| Bse21I | CCTNAGG | 1 cut(s) | 1145 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1443 |
| BseBI | CCWGG | 3 cut(s) | 467, 761, 774 |
| BseDI | CCNNGG | 6 cut(s) | 466, 601, 821, 1110, 1197, 1209 |
| BseJI | GATNNNNATC | 1 cut(s) | 1443 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 537, 636, 637, 787, 826, 1099, 1215 |
| BseMII | CTCAG | 3 cut(s) | 201, 1097, 1547 |
| BseNI | ACTGG | 4 cut(s) | 82, 548, 673, 1260 |
| BseSI | GKGCMC | 2 cut(s) | 335, 390 |
| BseXI | GCAGC | 5 cut(s) | 679, 682, 1054, 1273, 1500 |
| BseYI | CCCAGC | 1 cut(s) | 61 |
| Bsh1236I | CGCG | 3 cut(s) | 328, 847, 1582 |
| Bsh1285I | CGRYCG | 2 cut(s) | 476, 949 |
| BshFI | GGCC | 6 cut(s) | 652, 680, 850, 980, 1058, 1382 |
| BshNI | GGYRCC | 3 cut(s) | 332, 385, 1232 |
| BsiEI | CGRYCG | 2 cut(s) | 476, 949 |
| BsiHKAI | GWGCWC | 3 cut(s) | 753, 912, 1348 |
| BsiSI | CCGG | 1 cut(s) | 949 |
| BslFI | GGGAC | 5 cut(s) | 483, 535, 613, 803, 1086 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 537, 636, 637, 787, 826, 1099, 1215 |
| BsmAI | GTCTC | 1 cut(s) | 1454 |
| BsmFI | GGGAC | 5 cut(s) | 483, 535, 613, 803, 1086 |
| BsmI | GAATGC | 2 cut(s) | 1266, 1410 |
| BsnI | GGCC | 6 cut(s) | 652, 680, 850, 980, 1058, 1382 |
| Bsp119I | TTCGAA | 1 cut(s) | 1417 |
| Bsp1286I | GDGCHC | 6 cut(s) | 335, 390, 753, 912, 921, 1348 |
| Bsp143I | GATC | 5 cut(s) | 473, 769, 1390, 1480, 1549 |
| Bsp19I | CCATGG | 1 cut(s) | 1110 |
| BspACI | CCGC | 6 cut(s) | 328, 578, 781, 847, 1012, 1582 |
| BspANI | GGCC | 6 cut(s) | 652, 680, 850, 980, 1058, 1382 |
| BspCNI | CTCAG | 3 cut(s) | 202, 1096, 1546 |
| BspFNI | CGCG | 3 cut(s) | 328, 847, 1582 |
| BspLI | GGNNCC | 8 cut(s) | 334, 387, 609, 641, 651, 719, 778, 1234 |
| BspPI | GGATC | 3 cut(s) | 764, 1475, 1557 |
| BspQI | GCTCTTC | 1 cut(s) | 1256 |
| BspT104I | TTCGAA | 1 cut(s) | 1417 |
| BspT107I | GGYRCC | 3 cut(s) | 332, 385, 1232 |
| BspTI | CTTAAG | 4 cut(s) | 406, 644, 1151, 1303 |
| BsrBI | CCGCTC | 1 cut(s) | 1012 |
| BsrI | ACTGG | 4 cut(s) | 82, 548, 673, 1260 |
| BssECI | CCNNGG | 6 cut(s) | 466, 601, 821, 1110, 1197, 1209 |
| BssMI | GATC | 5 cut(s) | 473, 769, 1390, 1480, 1549 |
| BssNI | GRCGYC | 1 cut(s) | 889 |
| BssT1I | CCWWGG | 3 cut(s) | 1110, 1197, 1209 |
| Bst2UI | CCWGG | 3 cut(s) | 467, 761, 774 |
| Bst6I | CTCTTC | 2 cut(s) | 1256, 1539 |
| BstACI | GRCGYC | 1 cut(s) | 889 |
| BstAFI | CTTAAG | 4 cut(s) | 406, 644, 1151, 1303 |
| BstBI | TTCGAA | 1 cut(s) | 1417 |
| BstC8I | GCNNGC | 4 cut(s) | 413, 654, 811, 1357 |
| BstDEI | CTNAG | 9 cut(s) | 210, 451, 624, 922, 927, 1083, 1145, 1237, 1533 |
| BstDSI | CCRYGG | 2 cut(s) | 821, 1110 |
| BstFNI | CGCG | 3 cut(s) | 328, 847, 1582 |
| BstHHI | GCGC | 1 cut(s) | 60 |
| BstKTI | GATC | 5 cut(s) | 476, 772, 1393, 1483, 1552 |
| BstMAI | GTCTC | 1 cut(s) | 1454 |
| BstMBI | GATC | 5 cut(s) | 473, 769, 1390, 1480, 1549 |
| BstMCI | CGRYCG | 2 cut(s) | 476, 949 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 92, 220, 704, 916, 1352 |
| BstNI | CCWGG | 3 cut(s) | 467, 761, 774 |
| BstNSI | RCATGY | 1 cut(s) | 99 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 625, 671, 1466 |
| BstSCI | CCNGG | 3 cut(s) | 465, 759, 772 |
| BstSFI | CTRYAG | 1 cut(s) | 240 |
| BstSLI | GKGCMC | 2 cut(s) | 335, 390 |
| BstUI | CGCG | 3 cut(s) | 328, 847, 1582 |
| BstV1I | GCAGC | 5 cut(s) | 679, 682, 1054, 1273, 1500 |
| BstV2I | GAAGAC | 3 cut(s) | 573, 671, 957 |
| BstX2I | RGATCY | 1 cut(s) | 1549 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 347 |
| BstYI | RGATCY | 1 cut(s) | 1549 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1145 |
| BsuI | GTATCC | 2 cut(s) | 498, 1216 |
| BsuRI | GGCC | 6 cut(s) | 652, 680, 850, 980, 1058, 1382 |
| BtgI | CCRYGG | 2 cut(s) | 821, 1110 |
| BtrI | CACGTC | 1 cut(s) | 218 |
| BtsI | GCAGTG | 1 cut(s) | 820 |
| BtsIMutI | CAGTG | 5 cut(s) | 41, 75, 555, 753, 820 |
| Cac8I | GCNNGC | 4 cut(s) | 413, 654, 811, 1357 |
| CfoI | GCGC | 1 cut(s) | 60 |
| Cfr13I | GGNCC | 3 cut(s) | 640, 650, 1057 |
| CseI | GACGC | 2 cut(s) | 334, 878 |
| Csp6I | GTAC | 3 cut(s) | 267, 436, 1015 |
| CviAII | CATG | 8 cut(s) | 72, 96, 150, 317, 785, 976, 1111, 1538 |
| CviQI | GTAC | 3 cut(s) | 267, 436, 1015 |
| DdeI | CTNAG | 9 cut(s) | 210, 451, 624, 922, 927, 1083, 1145, 1237, 1533 |
| DpnI | GATC | 5 cut(s) | 475, 771, 1392, 1482, 1551 |
| DpnII | GATC | 5 cut(s) | 473, 769, 1390, 1480, 1549 |
| EaeI | YGGCCR | 3 cut(s) | 848, 978, 1380 |
| Eam1104I | CTCTTC | 2 cut(s) | 1256, 1539 |
| EarI | CTCTTC | 2 cut(s) | 1256, 1539 |
| Ecl136II | GAGCTC | 1 cut(s) | 910 |
| Eco130I | CCWWGG | 3 cut(s) | 1110, 1197, 1209 |
| Eco24I | GRGCYC | 2 cut(s) | 912, 921 |
| Eco32I | GATATC | 1 cut(s) | 868 |
| Eco47I | GGWCC | 1 cut(s) | 640 |
| Eco53kI | GAGCTC | 1 cut(s) | 910 |
| Eco57I | CTGAAG | 2 cut(s) | 1049, 1118 |
| Eco81I | CCTNAGG | 1 cut(s) | 1145 |
| EcoICRI | GAGCTC | 1 cut(s) | 910 |
| EcoO109I | RGGNCCY | 2 cut(s) | 640, 650 |
| EcoRII | CCWGG | 3 cut(s) | 465, 759, 772 |
| EcoRV | GATATC | 1 cut(s) | 868 |
| EcoT14I | CCWWGG | 3 cut(s) | 1110, 1197, 1209 |
| EcoT38I | GRGCYC | 2 cut(s) | 912, 921 |
| ErhI | CCWWGG | 3 cut(s) | 1110, 1197, 1209 |
| FaeI | CATG | 8 cut(s) | 75, 99, 153, 320, 788, 979, 1114, 1541 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1536, 1568 |
| FaqI | GGGAC | 5 cut(s) | 483, 535, 613, 803, 1086 |
| FatI | CATG | 8 cut(s) | 71, 95, 149, 316, 784, 975, 1110, 1537 |
| FauI | CCCGC | 2 cut(s) | 321, 788 |
| FauNDI | CATATG | 1 cut(s) | 970 |
| Fnu4HI | GCNGC | 6 cut(s) | 693, 696, 848, 1043, 1287, 1489 |
| FriOI | GRGCYC | 2 cut(s) | 912, 921 |
| Fsp4HI | GCNGC | 6 cut(s) | 693, 696, 848, 1043, 1287, 1489 |
| FspBI | CTAG | 2 cut(s) | 525, 1485 |
| GlaI | GCGC | 1 cut(s) | 59 |
| GluI | GCNGC | 6 cut(s) | 693, 696, 848, 1043, 1287, 1489 |
| GsaI | CCCAGC | 1 cut(s) | 65 |
| GsuI | CTGGAG | 2 cut(s) | 690, 1277 |
| HaeIII | GGCC | 6 cut(s) | 652, 680, 850, 980, 1058, 1382 |
| HapII | CCGG | 1 cut(s) | 949 |
| HgaI | GACGC | 2 cut(s) | 334, 878 |
| HhaI | GCGC | 1 cut(s) | 60 |
| Hin1I | GRCGYC | 1 cut(s) | 889 |
| Hin1II | CATG | 8 cut(s) | 75, 99, 153, 320, 788, 979, 1114, 1541 |
| Hin6I | GCGC | 1 cut(s) | 58 |
| HinP1I | GCGC | 1 cut(s) | 58 |
| HinfI | GANTC | 6 cut(s) | 672, 894, 935, 1081, 1499, 1531 |
| HpaII | CCGG | 1 cut(s) | 949 |
| HphI | GGTGA | 2 cut(s) | 1148, 1553 |
| Hpy166II | GTNNAC | 1 cut(s) | 1051 |
| Hpy188I | TCNGA | 9 cut(s) | 102, 364, 460, 565, 602, 914, 940, 1252, 1504 |
| Hpy188III | TCNNGA | 3 cut(s) | 235, 989, 1349 |
| Hpy8I | GTNNAC | 1 cut(s) | 1051 |
| Hpy99I | CGWCG | 3 cut(s) | 219, 435, 894 |
| HpyCH4IV | ACGT | 2 cut(s) | 217, 252 |
| HpyCH4V | TGCA | 7 cut(s) | 75, 95, 707, 1000, 1294, 1526, 1562 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 92, 220, 704, 916, 1352 |
| HpyF3I | CTNAG | 9 cut(s) | 210, 451, 624, 922, 927, 1083, 1145, 1237, 1533 |
| HpySE526I | ACGT | 2 cut(s) | 217, 252 |
| Hsp92I | GRCGYC | 1 cut(s) | 889 |
| Hsp92II | CATG | 8 cut(s) | 75, 99, 153, 320, 788, 979, 1114, 1541 |
| HspAI | GCGC | 1 cut(s) | 58 |
| Kzo9I | GATC | 5 cut(s) | 473, 769, 1390, 1480, 1549 |
| LguI | GCTCTTC | 1 cut(s) | 1256 |
| LmnI | GCTCC | 4 cut(s) | 355, 717, 748, 1407 |
| Lsp1109I | GCAGC | 5 cut(s) | 679, 682, 1054, 1273, 1500 |
| LweI | GCATC | 4 cut(s) | 45, 1453, 1513, 1549 |
| MaeI | CTAG | 2 cut(s) | 525, 1485 |
| MaeII | ACGT | 2 cut(s) | 217, 252 |
| MaeIII | GTNAC | 5 cut(s) | 41, 47, 202, 248, 322 |
| MalI | GATC | 5 cut(s) | 475, 771, 1392, 1482, 1551 |
| MbiI | CCGCTC | 1 cut(s) | 1012 |
| MboI | GATC | 5 cut(s) | 473, 769, 1390, 1480, 1549 |
| MboII | GAAGA | 9 cut(s) | 578, 676, 957, 1273, 1302, 1406, 1442, 1505, 1556 |
| MfeI | CAATTG | 1 cut(s) | 874 |
| MflI | RGATCY | 1 cut(s) | 1549 |
| MhlI | GDGCHC | 6 cut(s) | 335, 390, 753, 912, 921, 1348 |
| MluCI | AATT | 4 cut(s) | 588, 874, 1157, 1223 |
| MlyI | GAGTC | 4 cut(s) | 681, 1075, 1508, 1525 |
| MmeI | TCCRAC | 6 cut(s) | 80, 364, 469, 1117, 1164, 1295 |
| MseI | TTAA | 5 cut(s) | 407, 645, 1152, 1304, 1332 |
| MspCI | CTTAAG | 4 cut(s) | 406, 644, 1151, 1303 |
| MspI | CCGG | 1 cut(s) | 949 |
| MspR9I | CCNGG | 3 cut(s) | 467, 761, 774 |
| MunI | CAATTG | 1 cut(s) | 874 |
| Mva1269I | GAATGC | 2 cut(s) | 1266, 1410 |
| MvaI | CCWGG | 3 cut(s) | 467, 761, 774 |
| MvnI | CGCG | 3 cut(s) | 328, 847, 1582 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 92, 220, 704, 916, 1352 |
| NcoI | CCATGG | 1 cut(s) | 1110 |
| NdeI | CATATG | 1 cut(s) | 970 |
| NdeII | GATC | 5 cut(s) | 473, 769, 1390, 1480, 1549 |
| NlaIII | CATG | 8 cut(s) | 75, 99, 153, 320, 788, 979, 1114, 1541 |
| NlaIV | GGNNCC | 8 cut(s) | 334, 387, 609, 641, 651, 719, 778, 1234 |
| NmeAIII | GCCGAG | 2 cut(s) | 112, 1006 |
| NmuCI | GTSAC | 2 cut(s) | 202, 322 |
| NspI | RCATGY | 1 cut(s) | 99 |
| NspV | TTCGAA | 1 cut(s) | 1417 |
| PciSI | GCTCTTC | 1 cut(s) | 1256 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 258 |
| PctI | GAATGC | 2 cut(s) | 1266, 1410 |
| PfeI | GAWTC | 2 cut(s) | 894, 935 |
| PfoI | TCCNGGA | 1 cut(s) | 759 |
| PkrI | GCNGC | 6 cut(s) | 694, 697, 849, 1044, 1288, 1490 |
| Ple19I | CGATCG | 1 cut(s) | 476 |
| PleI | GAGTC | 4 cut(s) | 680, 1075, 1507, 1525 |
| PpsI | GAGTC | 4 cut(s) | 680, 1075, 1507, 1525 |
| PpuMI | RGGWCCY | 1 cut(s) | 640 |
| PshAI | GACNNNNGTC | 3 cut(s) | 625, 671, 1466 |
| Psp124BI | GAGCTC | 1 cut(s) | 912 |
| Psp5II | RGGWCCY | 1 cut(s) | 640 |
| Psp6I | CCWGG | 3 cut(s) | 465, 759, 772 |
| PspFI | CCCAGC | 1 cut(s) | 61 |
| PspGI | CCWGG | 3 cut(s) | 465, 759, 772 |
| PspN4I | GGNNCC | 8 cut(s) | 334, 387, 609, 641, 651, 719, 778, 1234 |
| PspPI | GGNCC | 3 cut(s) | 640, 650, 1057 |
| PspPPI | RGGWCCY | 1 cut(s) | 640 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 246, 278 |
| PsuI | RGATCY | 1 cut(s) | 1549 |
| PvuI | CGATCG | 1 cut(s) | 476 |
| RsaI | GTAC | 3 cut(s) | 268, 437, 1016 |
| RsaNI | GTAC | 3 cut(s) | 267, 436, 1015 |
| SacI | GAGCTC | 1 cut(s) | 912 |
| SapI | GCTCTTC | 1 cut(s) | 1256 |
| SaqAI | TTAA | 5 cut(s) | 407, 645, 1152, 1304, 1332 |
| SatI | GCNGC | 6 cut(s) | 693, 696, 848, 1043, 1287, 1489 |
| Sau3AI | GATC | 5 cut(s) | 473, 769, 1390, 1480, 1549 |
| Sau96I | GGNCC | 3 cut(s) | 640, 650, 1057 |
| SchI | GAGTC | 4 cut(s) | 681, 1075, 1508, 1525 |
| ScrFI | CCNGG | 3 cut(s) | 467, 761, 774 |
| SduI | GDGCHC | 6 cut(s) | 335, 390, 753, 912, 921, 1348 |
| SfaNI | GCATC | 4 cut(s) | 45, 1453, 1513, 1549 |
| SfcI | CTRYAG | 1 cut(s) | 240 |
| SfuI | TTCGAA | 1 cut(s) | 1417 |
| SinI | GGWCC | 1 cut(s) | 640 |
| SmlI | CTYRAG | 6 cut(s) | 406, 644, 832, 1151, 1303, 1347 |
| SmoI | CTYRAG | 6 cut(s) | 406, 644, 832, 1151, 1303, 1347 |
| Sse9I | AATT | 4 cut(s) | 588, 874, 1157, 1223 |
| SsiI | CCGC | 6 cut(s) | 328, 578, 781, 847, 1012, 1582 |
| SspMI | CTAG | 2 cut(s) | 525, 1485 |
| SstI | GAGCTC | 1 cut(s) | 912 |
| StyD4I | CCNGG | 3 cut(s) | 465, 759, 772 |
| StyI | CCWWGG | 3 cut(s) | 1110, 1197, 1209 |
| TaiI | ACGT | 2 cut(s) | 220, 255 |
| TaqI | TCGA | 7 cut(s) | 476, 675, 892, 903, 1313, 1417, 1450 |
| TasI | AATT | 4 cut(s) | 588, 874, 1157, 1223 |
| TauI | GCSGC | 1 cut(s) | 850 |
| TfiI | GAWTC | 2 cut(s) | 894, 935 |
| Tru1I | TTAA | 5 cut(s) | 407, 645, 1152, 1304, 1332 |
| Tru9I | TTAA | 5 cut(s) | 407, 645, 1152, 1304, 1332 |
| TscAI | CASTG | 5 cut(s) | 41, 82, 555, 760, 820 |
| TseFI | GTSAC | 2 cut(s) | 202, 322 |
| TseI | GCWGC | 5 cut(s) | 692, 695, 1042, 1286, 1488 |
| Tsp45I | GTSAC | 2 cut(s) | 202, 322 |
| TspDTI | ATGAA | 7 cut(s) | 305, 483, 581, 948, 957, 1310, 1524 |
| TspGWI | ACGGA | 1 cut(s) | 604 |
| TspRI | CASTG | 5 cut(s) | 41, 82, 555, 760, 820 |
| Vha464I | CTTAAG | 4 cut(s) | 406, 644, 1151, 1303 |
| VpaK11BI | GGWCC | 1 cut(s) | 640 |
| XapI | RAATTY | 1 cut(s) | 588 |
| XceI | RCATGY | 1 cut(s) | 99 |
| XspI | CTAG | 2 cut(s) | 525, 1485 |