Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0013723

Physical Location & Seq

Genomic Coordinates Reverse (-)

23357346 .. 23357924

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g22910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAGCAAAGCTTTGGCTGAGGCCATCCGCCTCAAAGATCAACACTTTGAAAGTTTGAAGAGGCGAAATGGTGAGAACGTGAGGCTCAAGAAACAACTGGAGAGGACTAAGAAACAGTTGGAGACTACTATCCTCGAAGTTTCCAAGGTGAAAGGGAAGTTGGATAGTGCCTTGGTTGAAGTTTCTGAGATAAAGAGGAGTATCCCAACTGAGAGGGACGCTGCCGTGCAGGAGTTCTTAGGTTCCCAGGCCTTTCAAGATGCTTTTAAACCTCACTGCATCCGGGCGGCTAATTTTGAGAAAAGGAAATGGATGGCCGTCCTTGAGCGTTACGATAATGGAAGCATTATCCAAAAGTACCGTGATGAGATGGATGAGTACCGACAAAGAGGTGAAGCCTTCGTCCTCGCAGTCGATCCTAGTAGTGAGGATGACTCTGATAATGAGGCTAGTATCGGTGAGCAATCTCAAGAGAGTGAGGATGGTTCTGGAGATACCGAGGATGGTGGCAATAGCGATGCGGTTGAAACGCAGAGTGATATTGTCAGGGGTTCGGCCTCAGATGAGGATGACTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

193

Amino Acids

21.58

Weight (kDa)

4.74

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013723)

Species	Orthologous Gene IDs
malus_domestica	MD00G1026300.v1.1 MD00G1156600.v1.1 MD01G1110200.v1.1 MD02G1250300.v1.1 MD03G1186300.v1.1 MD05G1144200.v1.1 MD06G1079400.v1.1 MD08G1169100.v1.1 MD09G1023200.v1.1 MD10G1200500.v1.1 MD11G1050500.v1.1 MD14G1153500.v1.1
pyrus_communis	pycom04g18140 pycom11g24920 pycom12g10950 pycom16g22910 pycom16g24020 pycom420g00920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	28, 287, 521
AclWI	GGATC	1 cut(s)	410
AcoI	YGGCCR	1 cut(s)	315
AfaI	GTAC	2 cut(s)	359, 380
AgsI	TTSAA	5 cut(s)	50, 58, 179, 257, 527
AjnI	CCWGG	1 cut(s)	246
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	1 cut(s)	410
AoxI	GGCC	4 cut(s)	21, 249, 315, 555
ApeKI	GCWGC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	284
AsuHPI	GGTGA	4 cut(s)	83, 160, 404, 470
BbvCI	CCTCAGC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	5 cut(s)	32, 307, 364, 476, 497
BceAI	ACGGC	2 cut(s)	209, 302
BciT130I	CCWGG	1 cut(s)	248
BciVI	GTATCC	1 cut(s)	212
BcnI	CCSGG	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	2 cut(s)	420, 450
BfuI	GTATCC	1 cut(s)	212
BisI	GCNGC	2 cut(s)	222, 288
BlsI	GCNGC	2 cut(s)	223, 289
Bme1390I	CCNGG	2 cut(s)	248, 284
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	2 cut(s)	248, 284
BmsI	GCATC	3 cut(s)	250, 288, 508
BplI	GAGNNNNNCTC	3 cut(s)	419, 451, 557
BpmI	CTGGAG	2 cut(s)	119, 510
Bpu10I	CCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	3 cut(s)	71, 344, 453
BpuMI	CCSGG	1 cut(s)	284
BsaJI	CCNNGG	4 cut(s)	144, 171, 246, 498
Bse1I	ACTGG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	4 cut(s)	144, 171, 246, 498
BseGI	GGATG	8 cut(s)	24, 279, 318, 379, 436, 487, 508, 574
BseMII	CTCAG	4 cut(s)	9, 177, 201, 573
BseNI	ACTGG	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	208
BsgI	GTGCAG	1 cut(s)	248
BshFI	GGCC	4 cut(s)	23, 251, 317, 557
BsiSI	CCGG	1 cut(s)	283
BslFI	GGGAC	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	4 cut(s)	23, 251, 317, 557
Bsp143I	GATC	2 cut(s)	37, 415
BspACI	CCGC	3 cut(s)	28, 287, 521
BspANI	GGCC	4 cut(s)	23, 251, 317, 557
BspCNI	CTCAG	4 cut(s)	10, 178, 202, 572
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	4 cut(s)	144, 171, 246, 498
BssMI	GATC	2 cut(s)	37, 415
BssT1I	CCWWGG	2 cut(s)	144, 171
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	117, 362
Bst6I	CTCTTC	1 cut(s)	53
BstDEI	CTNAG	6 cut(s)	18, 108, 186, 210, 238, 559
BstF5I	GGATG	8 cut(s)	24, 279, 318, 379, 436, 487, 508, 574
BstKTI	GATC	2 cut(s)	40, 418
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	2 cut(s)	37, 415
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	2 cut(s)	246, 282
BstV1I	GCAGC	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	212
BsuRI	GGCC	4 cut(s)	23, 251, 317, 557
BtgZI	GCGATG	1 cut(s)	531
BtsCI	GGATG	8 cut(s)	24, 279, 318, 379, 436, 487, 508, 574
BtsI	GCAGTG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	274
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	358, 379
CviQI	GTAC	2 cut(s)	358, 379
DdeI	CTNAG	6 cut(s)	18, 108, 186, 210, 238, 559
DpnI	GATC	2 cut(s)	39, 417
DpnII	GATC	2 cut(s)	37, 415
DraI	TTTAAA	1 cut(s)	268
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	144, 171
Eco147I	AGGCCT	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	2 cut(s)	144, 171
ErhI	CCWWGG	2 cut(s)	144, 171
FaiI	YATR	1 cut(s)	577
FaqI	GGGAC	1 cut(s)	230
Fnu4HI	GCNGC	2 cut(s)	222, 288
FokI	GGATG	7 cut(s)	11, 266, 325, 386, 443, 494, 515
Fsp4HI	GCNGC	2 cut(s)	222, 288
FspBI	CTAG	2 cut(s)	420, 450
GluI	GCNGC	2 cut(s)	222, 288
GsuI	CTGGAG	2 cut(s)	119, 510
HaeIII	GGCC	4 cut(s)	23, 251, 317, 557
HapII	CCGG	1 cut(s)	283
HgaI	GACGC	1 cut(s)	227
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	2 cut(s)	434, 572
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	4 cut(s)	83, 160, 404, 470
Hpy188I	TCNGA	3 cut(s)	187, 439, 562
Hpy188III	TCNNGA	4 cut(s)	88, 257, 470, 489
HpyAV	CCTTC	1 cut(s)	409
HpyCH4III	ACNGT	2 cut(s)	117, 362
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	2 cut(s)	229, 279
HpyF3I	CTNAG	6 cut(s)	18, 108, 186, 210, 238, 559
HpySE526I	ACGT	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	37, 415
LpnPI	CCDG	7 cut(s)	83, 215, 233, 260, 296, 474, 532
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	3 cut(s)	250, 288, 508
MaeI	CTAG	2 cut(s)	420, 450
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	2 cut(s)	39, 417
MboI	GATC	2 cut(s)	37, 415
MboII	GAAGA	1 cut(s)	70
MluCI	AATT	1 cut(s)	292
MlyI	GAGTC	2 cut(s)	428, 566
MmeI	TCCRAC	2 cut(s)	99, 141
MseI	TTAA	1 cut(s)	267
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	2 cut(s)	248, 284
MvaI	CCWGG	1 cut(s)	248
NciI	CCSGG	1 cut(s)	284
NdeII	GATC	2 cut(s)	37, 415
NlaIV	GGNNCC	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	223, 289
PleI	GAGTC	2 cut(s)	428, 566
PpsI	GAGTC	2 cut(s)	428, 566
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	244
RsaI	GTAC	2 cut(s)	359, 380
RsaNI	GTAC	2 cut(s)	358, 379
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	2 cut(s)	222, 288
Sau3AI	GATC	2 cut(s)	37, 415
SchI	GAGTC	2 cut(s)	428, 566
ScrFI	CCNGG	2 cut(s)	248, 284
SetI	ASST	6 cut(s)	13, 81, 150, 244, 274, 394
SfaNI	GCATC	3 cut(s)	250, 288, 508
SmlI	CTYRAG	3 cut(s)	86, 323, 468
SmoI	CTYRAG	3 cut(s)	86, 323, 468
Sse9I	AATT	1 cut(s)	292
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	3 cut(s)	28, 287, 521
SspMI	CTAG	2 cut(s)	420, 450
StuI	AGGCCT	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	246, 282
StyI	CCWWGG	2 cut(s)	144, 171
TaaI	ACNGT	2 cut(s)	117, 362
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	2 cut(s)	135, 414
TasI	AATT	1 cut(s)	292
TauI	GCSGC	1 cut(s)	290
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	281
TseI	GCWGC	1 cut(s)	221
TspRI	CASTG	1 cut(s)	281
XspI	CTAG	2 cut(s)	420, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.