Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0013723

Physical Location & Seq

Genomic Coordinates Forward (+)

27750754 .. 27751739

Gene Structure 986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g24920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGTAGTTCTCGTAGACGACATTTTGTTTCATAAGGGAGCTCGTAAGCACCGGGTGAGGCCAGCCCTTAGACCTAAGTCGCAAGAGGAGGTCCTCAAGATTACTGCCTCAACGAAGGCTGAAGCTGAGGCCATCGGGTGTGCTGCTACCATAGTTGCAGGGGAGGAGAGACGACTGTTGCCTCATCTTCCTACCATCGATCCCATTTTTCCTCCAACCATGGAGTCCACTGACCAAGAAGGTGACCCTAGCTCCAGCCGTAAGAGGAAGTATAAGGAAGAGGTTGGCAACATCCATTGGAAAGATTTGAAGGTTGCCATGCAGCCAAGTAGTTTTAGATATGTCAATAATTGCCTGGCAGGACGTCGATCCAATGTTGATGAGCTTGGCAAGTCGCTAGATAAGAACGAATCAGATCGTGACCGAATGATGAGGCTATCTTCTTATGTCATGACTGATTATGACGACAGATTACGAGAGGTTAAGTGGTACAAGGAAAAGTTTAAGGAGAATAAGCAGCTTGTGAATAACACCAGAAAAACGAGCAAAGCTTTGGCTGAGGCCATCCGCTGCAAGGATCAAAACCTTGAATGTTTGAAGAGGCGGAATGGTGAGAACACAACTATTCTTGAAGTTTCCAAGGTTAAATGGGAGTTGGATAGTGCCTTGGTTGAGGTTTGTGGGCTGAAGAGGAGTATCCCAACTAAGATGAACGCTGCCGTGCAGGAGTTCTTAGGTTCCCAGGCCTTTCACAATGCCTCTAGGCCTCACTGCATCTGGGCGGCTAATTTGGAGAAAAGGAAATGGATGTCCATCCTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

275

Amino Acids

31.46

Weight (kDa)

9.35

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013723)

Species	Orthologous Gene IDs
malus_domestica	MD00G1026300.v1.1 MD00G1156600.v1.1 MD01G1110200.v1.1 MD02G1250300.v1.1 MD03G1186300.v1.1 MD05G1144200.v1.1 MD06G1079400.v1.1 MD08G1169100.v1.1 MD09G1023200.v1.1 MD10G1200500.v1.1 MD11G1050500.v1.1 MD14G1153500.v1.1
pyrus_communis	pycom04g18140 pycom11g24920 pycom12g10950 pycom16g22910 pycom16g24020 pycom420g00920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	367
AccI	GTMKAC	1 cut(s)	15
AciI	CCGC	3 cut(s)	568, 604, 782
AclWI	GGATC	3 cut(s)	194, 363, 585
AcuI	CTGAAG	2 cut(s)	141, 707
AcyI	GRCGYC	1 cut(s)	364
AdeI	CACNNNGTG	1 cut(s)	55
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	1 cut(s)	574
AgsI	TTSAA	5 cut(s)	310, 590, 598, 632, 821
AjnI	CCWGG	2 cut(s)	354, 741
AluBI	AGCT	6 cut(s)	41, 125, 252, 385, 520, 551
AluI	AGCT	6 cut(s)	41, 125, 252, 385, 520, 551
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	3 cut(s)	194, 363, 585
AoxI	GGCC	5 cut(s)	59, 129, 561, 744, 764
ApeKI	GCWGC	5 cut(s)	143, 322, 517, 570, 716
AspS9I	GGNCC	1 cut(s)	91
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	3 cut(s)	67, 254, 623
AvaII	GGWCC	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	43
BbvCI	CCTCAGC	2 cut(s)	126, 558
BbvI	GCAGC	5 cut(s)	130, 334, 529, 557, 703
BccI	CCATC	4 cut(s)	140, 203, 572, 821
BceAI	ACGGC	2 cut(s)	243, 704
BciT130I	CCWGG	2 cut(s)	356, 743
BciVI	GTATCC	1 cut(s)	707
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	3 cut(s)	249, 398, 762
BfuI	GTATCC	1 cut(s)	707
BisI	GCNGC	6 cut(s)	144, 323, 518, 571, 717, 783
BlsI	GCNGC	6 cut(s)	145, 324, 519, 572, 718, 784
Bme1390I	CCNGG	3 cut(s)	53, 356, 743
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	739
BmrFI	CCNGG	3 cut(s)	53, 356, 743
BmsI	GCATC	1 cut(s)	783
BoxI	GACNNNNGTC	1 cut(s)	76
BpmI	CTGGAG	1 cut(s)	238
Bpu10I	CCTNAGC	2 cut(s)	126, 558
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	198
BsaBI	GATNNNNATC	1 cut(s)	812
BsaHI	GRCGYC	1 cut(s)	364
BsaJI	CCNNGG	4 cut(s)	219, 639, 666, 741
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	574
Bse8I	GATNNNNATC	1 cut(s)	812
BseBI	CCWGG	2 cut(s)	356, 743
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	4 cut(s)	219, 639, 666, 741
BseGI	GGATG	4 cut(s)	291, 564, 813, 813
BseJI	GATNNNNATC	1 cut(s)	812
BseLI	CCNNNNNNNGG	1 cut(s)	574
BseMII	CTCAG	2 cut(s)	117, 549
BseRI	GAGGAG	3 cut(s)	101, 179, 706
BseXI	GCAGC	5 cut(s)	130, 334, 529, 557, 703
BsgI	GTGCAG	1 cut(s)	743
BshFI	GGCC	5 cut(s)	61, 131, 563, 746, 766
BshVI	ATCGAT	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	574
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsnI	GGCC	5 cut(s)	61, 131, 563, 746, 766
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	4 cut(s)	199, 368, 415, 577
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	3 cut(s)	568, 604, 782
BspANI	GGCC	5 cut(s)	61, 131, 563, 746, 766
BspCNI	CTCAG	2 cut(s)	118, 550
BspDI	ATCGAT	1 cut(s)	198
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	739
BspPI	GGATC	3 cut(s)	194, 363, 585
BssECI	CCNNGG	4 cut(s)	219, 639, 666, 741
BssMI	GATC	4 cut(s)	199, 368, 415, 577
BssNI	GRCGYC	1 cut(s)	364
BssT1I	CCWWGG	3 cut(s)	219, 639, 666
Bst2UI	CCWGG	2 cut(s)	356, 743
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	3 cut(s)	273, 593, 683
BstACI	GRCGYC	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	6 cut(s)	68, 75, 126, 558, 705, 733
BstDSI	CCRYGG	1 cut(s)	219
BstEII	GGTNACC	1 cut(s)	242
BstF5I	GGATG	4 cut(s)	291, 564, 813, 813
BstKTI	GATC	4 cut(s)	202, 371, 418, 580
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	4 cut(s)	199, 368, 415, 577
BstNI	CCWGG	2 cut(s)	356, 743
BstPAI	GACNNNNGTC	1 cut(s)	76
BstPI	GGTNACC	1 cut(s)	242
BstSCI	CCNGG	3 cut(s)	51, 354, 741
BstV1I	GCAGC	5 cut(s)	130, 334, 529, 557, 703
Bsu15I	ATCGAT	1 cut(s)	198
BsuI	GTATCC	1 cut(s)	707
BsuRI	GGCC	5 cut(s)	61, 131, 563, 746, 766
BsuTUI	ATCGAT	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	4 cut(s)	291, 564, 813, 813
BtsI	GCAGTG	1 cut(s)	769
BtsIMutI	CAGTG	2 cut(s)	228, 769
Cac8I	GCNNGC	1 cut(s)	63
CciI	TCATGA	1 cut(s)	450
Cfr13I	GGNCC	1 cut(s)	91
ClaI	ATCGAT	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	3 cut(s)	220, 319, 451
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	6 cut(s)	68, 75, 126, 558, 705, 733
DpnI	GATC	4 cut(s)	201, 370, 417, 579
DpnII	GATC	4 cut(s)	199, 368, 415, 577
DraIII	CACNNNGTG	1 cut(s)	55
Eam1104I	CTCTTC	3 cut(s)	273, 593, 683
EarI	CTCTTC	3 cut(s)	273, 593, 683
EciI	GGCGGA	1 cut(s)	619
Ecl136II	GAGCTC	1 cut(s)	41
Eco130I	CCWWGG	3 cut(s)	219, 639, 666
Eco147I	AGGCCT	2 cut(s)	746, 766
Eco24I	GRGCYC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	41
Eco57I	CTGAAG	2 cut(s)	141, 707
Eco91I	GGTNACC	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	91
EcoO65I	GGTNACC	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	354, 741
EcoT14I	CCWWGG	3 cut(s)	219, 639, 666
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	3 cut(s)	219, 639, 666
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	3 cut(s)	223, 322, 454
FaiI	YATR	9 cut(s)	33, 152, 221, 273, 320, 342, 447, 452, 462
FatI	CATG	3 cut(s)	219, 318, 450
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	6 cut(s)	144, 323, 518, 571, 717, 783
FokI	GGATG	4 cut(s)	278, 551, 800, 820
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	6 cut(s)	144, 323, 518, 571, 717, 783
FspBI	CTAG	3 cut(s)	249, 398, 762
GluI	GCNGC	6 cut(s)	144, 323, 518, 571, 717, 783
GsuI	CTGGAG	1 cut(s)	238
HaeIII	GGCC	5 cut(s)	61, 131, 563, 746, 766
HapII	CCGG	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	364
Hin1II	CATG	3 cut(s)	223, 322, 454
HindIII	AAGCTT	1 cut(s)	549
HinfI	GANTC	2 cut(s)	224, 410
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	3 cut(s)	67, 254, 623
Hpy166II	GTNNAC	2 cut(s)	16, 228
Hpy188I	TCNGA	1 cut(s)	415
Hpy188III	TCNNGA	4 cut(s)	97, 419, 451, 629
Hpy8I	GTNNAC	2 cut(s)	16, 228
Hpy99I	CGWCG	1 cut(s)	369
HpyAV	CCTTC	3 cut(s)	109, 233, 304
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	5 cut(s)	158, 322, 573, 724, 774
HpyF3I	CTNAG	6 cut(s)	68, 75, 126, 558, 705, 733
HpySE526I	ACGT	1 cut(s)	364
Hsp92I	GRCGYC	1 cut(s)	364
Hsp92II	CATG	3 cut(s)	223, 322, 454
Kzo9I	GATC	4 cut(s)	199, 368, 415, 577
LmnI	GCTCC	2 cut(s)	38, 257
Lsp1109I	GCAGC	5 cut(s)	130, 334, 529, 557, 703
LweI	GCATC	1 cut(s)	783
MaeI	CTAG	3 cut(s)	249, 398, 762
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	2 cut(s)	242, 419
MalI	GATC	4 cut(s)	201, 370, 417, 579
MboI	GATC	4 cut(s)	199, 368, 415, 577
MboII	GAAGA	5 cut(s)	179, 290, 432, 610, 700
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	2 cut(s)	349, 787
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	2 cut(s)	239, 636
MseI	TTAA	3 cut(s)	483, 504, 645
MspA1I	CMGCKG	1 cut(s)	570
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	3 cut(s)	53, 356, 743
MvaI	CCWGG	2 cut(s)	356, 743
NciI	CCSGG	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	4 cut(s)	199, 368, 415, 577
NlaIII	CATG	3 cut(s)	223, 322, 454
NlaIV	GGNNCC	1 cut(s)	739
NmuCI	GTSAC	2 cut(s)	242, 419
PagI	TCATGA	1 cut(s)	450
PceI	AGGCCT	2 cut(s)	746, 766
PfeI	GAWTC	1 cut(s)	410
PkrI	GCNGC	6 cut(s)	145, 324, 519, 572, 718, 784
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PpuMI	RGGWCCY	1 cut(s)	91
PshAI	GACNNNNGTC	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	91
Psp6I	CCWGG	2 cut(s)	354, 741
PspEI	GGTNACC	1 cut(s)	242
PspGI	CCWGG	2 cut(s)	354, 741
PspN4I	GGNNCC	1 cut(s)	739
PspPI	GGNCC	1 cut(s)	91
PspPPI	RGGWCCY	1 cut(s)	91
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
SacI	GAGCTC	1 cut(s)	43
SaqAI	TTAA	3 cut(s)	483, 504, 645
SatI	GCNGC	6 cut(s)	144, 323, 518, 571, 717, 783
Sau3AI	GATC	4 cut(s)	199, 368, 415, 577
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	3 cut(s)	53, 356, 743
SduI	GDGCHC	1 cut(s)	43
SfaNI	GCATC	1 cut(s)	783
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	2 cut(s)	349, 787
SseBI	AGGCCT	2 cut(s)	746, 766
SsiI	CCGC	3 cut(s)	568, 604, 782
SspMI	CTAG	3 cut(s)	249, 398, 762
SstI	GAGCTC	1 cut(s)	43
StuI	AGGCCT	2 cut(s)	746, 766
StyD4I	CCNGG	3 cut(s)	51, 354, 741
StyI	CCWWGG	3 cut(s)	219, 639, 666
TaaI	ACNGT	1 cut(s)	177
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	2 cut(s)	198, 367
TaqII	GACCGA	1 cut(s)	438
TasI	AATT	2 cut(s)	349, 787
TauI	GCSGC	1 cut(s)	785
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	3 cut(s)	483, 504, 645
Tru9I	TTAA	3 cut(s)	483, 504, 645
TscAI	CASTG	2 cut(s)	235, 776
TseFI	GTSAC	2 cut(s)	242, 419
TseI	GCWGC	5 cut(s)	143, 322, 517, 570, 716
Tsp45I	GTSAC	2 cut(s)	242, 419
TspDTI	ATGAA	2 cut(s)	20, 725
TspRI	CASTG	2 cut(s)	235, 776
VpaK11BI	GGWCC	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	3 cut(s)	249, 398, 762
ZraI	GACGTC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.