Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0013723

Physical Location & Seq

Genomic Coordinates Forward (+)

13063065 .. 13063935

Gene Structure 871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g10950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTTAGTTCCTGTAGATGACATTTTGTTTCACAAGGAAGCTCGTAAACACCGGGTGAGGCCAGCCCCTAGACCTAAGTCGCAAGAGGAGGTCCTCAAGATCACTGCCTCAAAAAGAGCTGAAGCTGAGGCTATCGGGTGTGCTGCTGCCATAGTTGCAGGGGAGGAGATACGACTGTTGCCTCCTCTTCCTACCATCGAGCCCATCTTTCCTCCAACCATAAAGTCCACTGACCAAGAAGGTGACCCTAGCTCCAGCCGTAAGAGGAAGTATAAGGAAGAGGTTTGTAGCATCCATTGGAATGATTTGAAGGTTGCCATACAACCAAGTAGTTTTAGGTATGTCAATAATTGCTTGGCAGGACGTCTATCCACTGTTGACGAGCTTGGCGAGCCGCTCGATGAGAATGAATCAGATCTTGACCGGATGATGAGGCTATCTTCTTATGACGACAGGTTACGAGAGGTCGAGCGGTACAAGGCAAAGTTTAAAGAGAATAACCAGCTTGTGAATGATACTAGAAAAACGAGCAAAGCTTTGGCTGAGGCTATCCGCCTCAAAGATCAACACTTTGAGAGTTTGAAGAGGCGAAATGGTGAGAATGTGAGGCTCAAGAAACAACTGGAGGGGACTAAGAAACAGTTGGAGACTACTATCCTCGAAGTTTCCAAGGTGAAATGGGAGTTGGATAATGCCTTGGTTGAAGTTTCTGAGCTAAAGAGGAGTATCCCAACTGAGAGGGACGCTGCCATGCAGGAGTTCTTAGGTTCCCAGGCCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

261

Amino Acids

29.74

Weight (kDa)

8.31

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013723)

Species	Orthologous Gene IDs
malus_domestica	MD00G1026300.v1.1 MD00G1156600.v1.1 MD01G1110200.v1.1 MD02G1250300.v1.1 MD03G1186300.v1.1 MD05G1144200.v1.1 MD06G1079400.v1.1 MD08G1169100.v1.1 MD09G1023200.v1.1 MD10G1200500.v1.1 MD11G1050500.v1.1 MD14G1153500.v1.1
pyrus_communis	pycom04g18140 pycom11g24920 pycom12g10950 pycom16g22910 pycom16g24020 pycom420g00920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	367
AccBSI	CCGCTC	2 cut(s)	397, 472
AciI	CCGC	3 cut(s)	395, 472, 553
AcuI	CTGAAG	1 cut(s)	141
AcyI	GRCGYC	1 cut(s)	364
AdeI	CACNNNGTG	1 cut(s)	55
AfaI	GTAC	1 cut(s)	476
AgsI	TTSAA	3 cut(s)	310, 583, 704
AjnI	CCWGG	1 cut(s)	771
AjuI	GAANNNNNNNTTGG	2 cut(s)	668, 700
AluBI	AGCT	8 cut(s)	41, 119, 125, 252, 385, 505, 536, 715
AluI	AGCT	8 cut(s)	41, 119, 125, 252, 385, 505, 536, 715
Alw26I	GTCTC	1 cut(s)	641
AoxI	GGCC	2 cut(s)	59, 774
ApeKI	GCWGC	3 cut(s)	143, 146, 746
AspS9I	GGNCC	1 cut(s)	91
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	4 cut(s)	67, 254, 608, 685
AvaII	GGWCC	1 cut(s)	91
BaeI	ACNNNNGTAYC	2 cut(s)	161, 194
BanII	GRGCYC	1 cut(s)	204
BbvCI	CCTCAGC	2 cut(s)	126, 543
BbvI	GCAGC	3 cut(s)	130, 133, 733
BccI	CCATC	2 cut(s)	203, 212
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	773
BciVI	GTATCC	1 cut(s)	737
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	641
BfaI	CTAG	3 cut(s)	69, 249, 519
BfmI	CTRYAG	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	737
BglII	AGATCT	1 cut(s)	415
BisI	GCNGC	4 cut(s)	144, 147, 395, 747
BlsI	GCNGC	4 cut(s)	145, 148, 396, 748
Bme1390I	CCNGG	2 cut(s)	53, 773
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	769
BmrFI	CCNGG	2 cut(s)	53, 773
BmsI	GCATC	1 cut(s)	300
BoxI	GACNNNNGTC	1 cut(s)	76
BpmI	CTGGAG	2 cut(s)	238, 644
Bpu10I	CCTNAGC	2 cut(s)	126, 543
BpuEI	CTTGAG	2 cut(s)	80, 596
BpuMI	CCSGG	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	364
BsaJI	CCNNGG	3 cut(s)	669, 696, 771
BsaWI	WCCGGW	1 cut(s)	423
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bse1I	ACTGG	1 cut(s)	627
BseBI	CCWGG	1 cut(s)	773
BseDI	CCNNGG	3 cut(s)	669, 696, 771
BseGI	GGATG	2 cut(s)	291, 432
BseMII	CTCAG	4 cut(s)	117, 534, 702, 726
BseNI	ACTGG	1 cut(s)	627
BseRI	GAGGAG	4 cut(s)	101, 174, 179, 736
BseXI	GCAGC	3 cut(s)	130, 133, 733
BshFI	GGCC	2 cut(s)	61, 776
BsiSI	CCGG	2 cut(s)	52, 424
BslFI	GGGAC	2 cut(s)	643, 755
BsmAI	GTCTC	1 cut(s)	641
BsmFI	GGGAC	2 cut(s)	643, 755
BsnI	GGCC	2 cut(s)	61, 776
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	99, 415, 562
BspACI	CCGC	3 cut(s)	395, 472, 553
BspANI	GGCC	2 cut(s)	61, 776
BspCNI	CTCAG	4 cut(s)	118, 535, 703, 727
BspLI	GGNNCC	1 cut(s)	769
BsrBI	CCGCTC	2 cut(s)	397, 472
BsrI	ACTGG	1 cut(s)	627
BssECI	CCNNGG	3 cut(s)	669, 696, 771
BssMI	GATC	3 cut(s)	99, 415, 562
BssNI	GRCGYC	1 cut(s)	364
BssT1I	CCWWGG	2 cut(s)	669, 696
Bst2UI	CCWGG	1 cut(s)	773
Bst4CI	ACNGT	3 cut(s)	177, 376, 642
Bst6I	CTCTTC	3 cut(s)	192, 273, 578
BstACI	GRCGYC	1 cut(s)	364
BstC8I	GCNNGC	2 cut(s)	63, 392
BstDEI	CTNAG	7 cut(s)	75, 126, 543, 633, 711, 735, 763
BstEII	GGTNACC	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	291, 432
BstKTI	GATC	3 cut(s)	102, 418, 565
BstMAI	GTCTC	1 cut(s)	641
BstMBI	GATC	3 cut(s)	99, 415, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 391
BstNI	CCWGG	1 cut(s)	773
BstPAI	GACNNNNGTC	1 cut(s)	76
BstPI	GGTNACC	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	51, 771
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	3 cut(s)	130, 133, 733
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuI	GTATCC	1 cut(s)	737
BsuRI	GGCC	2 cut(s)	61, 776
BtsCI	GGATG	2 cut(s)	291, 432
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	3 cut(s)	102, 228, 372
Cac8I	GCNNGC	2 cut(s)	63, 392
Cfr13I	GGNCC	1 cut(s)	91
CseI	GACGC	1 cut(s)	752
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	1 cut(s)	751
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	7 cut(s)	75, 126, 543, 633, 711, 735, 763
DpnI	GATC	3 cut(s)	101, 417, 564
DpnII	GATC	3 cut(s)	99, 415, 562
DraI	TTTAAA	1 cut(s)	490
DraIII	CACNNNGTG	1 cut(s)	55
Eam1104I	CTCTTC	3 cut(s)	192, 273, 578
EarI	CTCTTC	3 cut(s)	192, 273, 578
EciI	GGCGGA	1 cut(s)	542
Eco130I	CCWWGG	2 cut(s)	669, 696
Eco147I	AGGCCT	1 cut(s)	776
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	141
Eco91I	GGTNACC	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	91
EcoO65I	GGTNACC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	771
EcoT14I	CCWWGG	2 cut(s)	669, 696
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	2 cut(s)	669, 696
FaeI	CATG	1 cut(s)	754
FaiI	YATR	7 cut(s)	152, 221, 273, 320, 342, 447, 752
FaqI	GGGAC	2 cut(s)	643, 755
FatI	CATG	1 cut(s)	750
Fnu4HI	GCNGC	4 cut(s)	144, 147, 395, 747
FokI	GGATG	2 cut(s)	278, 439
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	4 cut(s)	144, 147, 395, 747
FspBI	CTAG	3 cut(s)	69, 249, 519
GluI	GCNGC	4 cut(s)	144, 147, 395, 747
GsuI	CTGGAG	2 cut(s)	238, 644
HaeIII	GGCC	2 cut(s)	61, 776
HapII	CCGG	2 cut(s)	52, 424
HgaI	GACGC	1 cut(s)	752
Hin1I	GRCGYC	1 cut(s)	364
Hin1II	CATG	1 cut(s)	754
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	2 cut(s)	52, 424
HphI	GGTGA	4 cut(s)	67, 254, 608, 685
Hpy166II	GTNNAC	3 cut(s)	47, 228, 379
Hpy188I	TCNGA	2 cut(s)	415, 712
Hpy188III	TCNNGA	3 cut(s)	97, 419, 613
Hpy8I	GTNNAC	3 cut(s)	47, 228, 379
HpyAV	CCTTC	2 cut(s)	233, 304
HpyCH4III	ACNGT	3 cut(s)	177, 376, 642
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	2 cut(s)	158, 754
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 391
HpyF3I	CTNAG	7 cut(s)	75, 126, 543, 633, 711, 735, 763
HpySE526I	ACGT	1 cut(s)	364
Hsp92I	GRCGYC	1 cut(s)	364
Hsp92II	CATG	1 cut(s)	754
Kzo9I	GATC	3 cut(s)	99, 415, 562
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	3 cut(s)	130, 133, 733
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	3 cut(s)	69, 249, 519
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	2 cut(s)	242, 456
MalI	GATC	3 cut(s)	101, 417, 564
MbiI	CCGCTC	2 cut(s)	397, 472
MboI	GATC	3 cut(s)	99, 415, 562
MboII	GAAGA	4 cut(s)	179, 290, 432, 595
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	1 cut(s)	349
MmeI	TCCRAC	3 cut(s)	239, 624, 666
MseI	TTAA	2 cut(s)	489, 781
MslI	CAYNNNNRTG	1 cut(s)	300
MspI	CCGG	2 cut(s)	52, 424
MspR9I	CCNGG	2 cut(s)	53, 773
MvaI	CCWGG	1 cut(s)	773
MwoI	GCNNNNNNNGC	2 cut(s)	155, 391
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	3 cut(s)	99, 415, 562
NlaIII	CATG	1 cut(s)	754
NlaIV	GGNNCC	1 cut(s)	769
NmuCI	GTSAC	1 cut(s)	242
PceI	AGGCCT	1 cut(s)	776
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	410
PkrI	GCNGC	4 cut(s)	145, 148, 396, 748
PpuMI	RGGWCCY	1 cut(s)	91
PshAI	GACNNNNGTC	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	771
PspEI	GGTNACC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	771
PspN4I	GGNNCC	1 cut(s)	769
PspPI	GGNCC	1 cut(s)	91
PspPPI	RGGWCCY	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	489, 781
SatI	GCNGC	4 cut(s)	144, 147, 395, 747
Sau3AI	GATC	3 cut(s)	99, 415, 562
Sau96I	GGNCC	1 cut(s)	91
ScrFI	CCNGG	2 cut(s)	53, 773
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	1 cut(s)	300
SfcI	CTRYAG	1 cut(s)	12
SinI	GGWCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	2 cut(s)	95, 611
SmoI	CTYRAG	2 cut(s)	95, 611
Sse9I	AATT	1 cut(s)	349
SseBI	AGGCCT	1 cut(s)	776
SsiI	CCGC	3 cut(s)	395, 472, 553
SspMI	CTAG	3 cut(s)	69, 249, 519
StuI	AGGCCT	1 cut(s)	776
StyD4I	CCNGG	2 cut(s)	51, 771
StyI	CCWWGG	2 cut(s)	669, 696
TaaI	ACNGT	3 cut(s)	177, 376, 642
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	4 cut(s)	198, 399, 468, 660
TasI	AATT	1 cut(s)	349
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	2 cut(s)	489, 781
Tru9I	TTAA	2 cut(s)	489, 781
TscAI	CASTG	3 cut(s)	109, 235, 379
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	3 cut(s)	143, 146, 746
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	423
TspRI	CASTG	3 cut(s)	109, 235, 379
VpaK11BI	GGWCC	1 cut(s)	91
XspI	CTAG	3 cut(s)	69, 249, 519
ZraI	GACGTC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.