Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013723

Physical Location & Seq

Genomic Coordinates Reverse (-)

29894793 .. 29898971

Gene Structure 4179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1200500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCAGCCAAGTAGTTTTAGGTATGTCAATAATTGCATGGCAGGACGTCGATCCACTGTTGATGAGCTTGGCGAGCCGCTAGATGAGAATGAATCAGATCGTGACCGGATAATGAGGCTATCTTCTTATGTTTTGATCGAGTACGATGACAGATTACGAGAGGTCGAGCGGTACAAGGCAAAGTTTAAAGAGAATAAGCAGCTTGTGAATGACGCCAGAAAAGCGAGCAAAGCTTTGGCTGATACCATCCCTCTTAAGGATCAAAACTTTGAGAATTTGAAGAGGCAGAATGGTGACAACGTGAGGCTCAAGAAACAATTGGAAGCGACAAAAAAAAACAGTTGGAGACAACCATCCTTGATGTTTCCAAGGTTAAATGGGAGTTGGATAGTGCATTGGTTGAGGTTTCTGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

139

Amino Acids

16.36

Weight (kDa)

9.67

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013723)

Species	Orthologous Gene IDs
malus_domestica	MD00G1026300.v1.1 MD00G1156600.v1.1 MD01G1110200.v1.1 MD02G1250300.v1.1 MD03G1186300.v1.1 MD05G1144200.v1.1 MD06G1079400.v1.1 MD08G1169100.v1.1 MD09G1023200.v1.1 MD10G1200500.v1.1 MD11G1050500.v1.1 MD14G1153500.v1.1
pyrus_communis	pycom04g18140 pycom11g24920 pycom12g10950 pycom16g22910 pycom16g24020 pycom420g00920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	49
AccBSI	CCGCTC	1 cut(s)	169
AciI	CCGC	2 cut(s)	77, 169
AclWI	GGATC	2 cut(s)	45, 267
AcsI	RAATTY	1 cut(s)	274
AcyI	GRCGYC	2 cut(s)	46, 213
AfaI	GTAC	2 cut(s)	143, 173
AfiI	CCNNNNNNNGG	1 cut(s)	256
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	280
AluBI	AGCT	3 cut(s)	67, 202, 233
AluI	AGCT	3 cut(s)	67, 202, 233
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	2 cut(s)	45, 267
ApeKI	GCWGC	2 cut(s)	4, 199
ApoI	RAATTY	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	305
BbvI	GCAGC	2 cut(s)	16, 211
BccI	CCATC	2 cut(s)	254, 361
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	1 cut(s)	80
BfrI	CTTAAG	1 cut(s)	254
BisI	GCNGC	3 cut(s)	5, 77, 200
BlsI	GCNGC	3 cut(s)	6, 78, 201
BpuEI	CTTGAG	1 cut(s)	293
BsaHI	GRCGYC	2 cut(s)	46, 213
BsaJI	CCNNGG	1 cut(s)	368
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	2 cut(s)	246, 353
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseXI	GCAGC	2 cut(s)	16, 211
BsiSI	CCGG	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	1 cut(s)	340
Bsp143I	GATC	4 cut(s)	50, 97, 135, 259
BspACI	CCGC	2 cut(s)	77, 169
BspPI	GGATC	2 cut(s)	45, 267
BspTI	CTTAAG	1 cut(s)	254
BsrBI	CCGCTC	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	368
BssMI	GATC	4 cut(s)	50, 97, 135, 259
BssNI	GRCGYC	2 cut(s)	46, 213
BssT1I	CCWWGG	1 cut(s)	368
Bst4CI	ACNGT	2 cut(s)	58, 341
Bst6I	CTCTTC	1 cut(s)	275
BstACI	GRCGYC	2 cut(s)	46, 213
BstAFI	CTTAAG	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	74, 226
BstF5I	GGATG	2 cut(s)	246, 353
BstKTI	GATC	4 cut(s)	53, 100, 138, 262
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	4 cut(s)	50, 97, 135, 259
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 221, 230
BstV1I	GCAGC	2 cut(s)	16, 211
BtsCI	GGATG	2 cut(s)	246, 353
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	2 cut(s)	74, 226
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	142, 172
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	9 cut(s)	7, 67, 76, 118, 202, 233, 239, 307, 414
CviKI_1	RGCY	9 cut(s)	7, 67, 76, 118, 202, 233, 239, 307, 414
CviQI	GTAC	2 cut(s)	142, 172
DpnI	GATC	4 cut(s)	52, 99, 137, 261
DpnII	GATC	4 cut(s)	50, 97, 135, 259
DraI	TTTAAA	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	1 cut(s)	40
FaiI	YATR	3 cut(s)	24, 38, 129
FatI	CATG	1 cut(s)	36
Fnu4HI	GCNGC	3 cut(s)	5, 77, 200
FokI	GGATG	2 cut(s)	233, 340
Fsp4HI	GCNGC	3 cut(s)	5, 77, 200
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	3 cut(s)	5, 77, 200
HapII	CCGG	1 cut(s)	106
HgaI	GACGC	1 cut(s)	221
Hin1I	GRCGYC	2 cut(s)	46, 213
Hin1II	CATG	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	1 cut(s)	305
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	2 cut(s)	101, 310
Hpy99I	CGWCG	1 cut(s)	51
HpyCH4III	ACNGT	2 cut(s)	58, 341
HpyCH4IV	ACGT	2 cut(s)	46, 300
HpyCH4V	TGCA	3 cut(s)	4, 36, 394
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 221, 230
HpySE526I	ACGT	2 cut(s)	46, 300
Hsp92I	GRCGYC	2 cut(s)	46, 213
Hsp92II	CATG	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	50, 97, 135, 259
LpnPI	CCDG	4 cut(s)	27, 119, 229, 395
Lsp1109I	GCAGC	2 cut(s)	16, 211
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	2 cut(s)	46, 300
MaeIII	GTNAC	2 cut(s)	101, 293
MalI	GATC	4 cut(s)	52, 99, 137, 261
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	4 cut(s)	50, 97, 135, 259
MboII	GAAGA	2 cut(s)	114, 292
MfeI	CAATTG	1 cut(s)	317
MluCI	AATT	3 cut(s)	31, 274, 317
MmeI	TCCRAC	2 cut(s)	323, 365
MnlI	CCTC	6 cut(s)	108, 154, 261, 276, 297, 396
MseI	TTAA	3 cut(s)	186, 255, 374
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	1 cut(s)	106
MunI	CAATTG	1 cut(s)	317
MwoI	GCNNNNNNNGC	3 cut(s)	73, 221, 230
NdeII	GATC	4 cut(s)	50, 97, 135, 259
NlaIII	CATG	1 cut(s)	40
NmuCI	GTSAC	2 cut(s)	101, 293
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	6, 78, 201
RsaI	GTAC	2 cut(s)	143, 173
RsaNI	GTAC	2 cut(s)	142, 172
SaqAI	TTAA	3 cut(s)	186, 255, 374
SatI	GCNGC	3 cut(s)	5, 77, 200
Sau3AI	GATC	4 cut(s)	50, 97, 135, 259
SetI	ASST	9 cut(s)	23, 49, 69, 165, 204, 235, 303, 374, 407
SmlI	CTYRAG	2 cut(s)	254, 308
SmoI	CTYRAG	2 cut(s)	254, 308
Sse9I	AATT	3 cut(s)	31, 274, 317
SsiI	CCGC	2 cut(s)	77, 169
SspMI	CTAG	1 cut(s)	80
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	2 cut(s)	58, 341
TaiI	ACGT	2 cut(s)	49, 303
TaqI	TCGA	3 cut(s)	49, 138, 165
TasI	AATT	3 cut(s)	31, 274, 317
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	3 cut(s)	186, 255, 374
Tru9I	TTAA	3 cut(s)	186, 255, 374
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	2 cut(s)	101, 293
TseI	GCWGC	2 cut(s)	4, 199
Tsp45I	GTSAC	2 cut(s)	101, 293
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	61
Vha464I	CTTAAG	1 cut(s)	254
XapI	RAATTY	1 cut(s)	274
XspI	CTAG	1 cut(s)	80
ZraI	GACGTC	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.