Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0013723

Physical Location & Seq

Genomic Coordinates Reverse (-)

19531151 .. 19534124

Gene Structure 2974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1079400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTTAGTTCCCGTAGACGACATTTTGTTTCACAAGGGAGCTCGTAAGCACCGAGTGAGGCCAACCCCTAAACTTAAGTCACAAGAGGAGGTCCTCAAGATTGCTGCCTCAAAAAAGGCTGAAGCTGAGGCCATCGGGTGTGCTGCTACCATAGTTACAAGGGATGAGAGACGACTGTTGCCTCCTCTTCCTACCATCAATCCCATATTTCTTCCAACCATGGAGTCTACTGACCAAGAAGGTGGCCCTAGCTGTAGCCGTAAGAGAAAGTACAAGGAAAAGGTTGGCAGCATTCATTGGAAGGACTTGAAGGTTGCCATGCAGCCAAGTAGTTTTAGGTATGTCAATAATTGCCTGGCAAGACGTCGATCCACTATTGATGAGCTTGGCAAGCCGTTAGATGAAAATGAATCAGATCGTGACCGGATGATGAGGTTATCTTCTTATGTCATGACCGAGTACGATGACAGATTACGAGAAGTCGAGCGGTACAAGGCAAAGTTTAAAGAGAATAAGCAGCTTGTGAATGACGCCAGAAAAACAAGCAAAGCTTTGGCTGATGCCATCCACCTTAAGGATGAAAACTTTGAGAGTTTGAAGAGGCGGAATGGTGAGAACGTGAGGCTCAAGAAACAATTGGAAGCGACTAAGGAACAGTTGGAGACAACCATCCTTGAGGTTTCCAAGGTTAAAGGGGAGTTGGATAGTACCTTGGTTGAGGTTTCTAGGCTGAAGATGAGTATCCCAACTGAGAGGGATGCTGCTGTGCAGGAGTTCTTAGGTTCCCAGGCCTTTCACGATGCTTTTAGACCTCACTACATCCGAGCAGCTAATTATGAGAAAAGGAAATGGATGGCCGTCCTTGAGCATTACAACAATGGAAGCATTATCCGAAAGTACCGTGATGAGATGGATGAGTACCGACAAAAGGGTGAAGCCTTCGTCCTCTCAGTTGATCCTAATAGTGATGATGACTCTAATAATGAGGCTAGTATCAGTAAGCAGTCTCAGGAGAGTGAGGATGGTCCTAGAGATGCTGAGGAAGGTGGTGATGACGATGGGGTTGAAATGCAGAGTGATATTGTCAGGGGTTCGGCCTCAGATGAGGATAACTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0044464 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

373

Amino Acids

42.56

Weight (kDa)

6.1

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013723)

Species	Orthologous Gene IDs
malus_domestica	MD00G1026300.v1.1 MD00G1156600.v1.1 MD01G1110200.v1.1 MD02G1250300.v1.1 MD03G1186300.v1.1 MD05G1144200.v1.1 MD06G1079400.v1.1 MD08G1169100.v1.1 MD09G1023200.v1.1 MD10G1200500.v1.1 MD11G1050500.v1.1 MD14G1153500.v1.1
pyrus_communis	pycom04g18140 pycom11g24920 pycom12g10950 pycom16g22910 pycom16g24020 pycom420g00920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	367
AccBSI	CCGCTC	1 cut(s)	487
AccI	GTMKAC	2 cut(s)	15, 227
AciI	CCGC	2 cut(s)	487, 604
AclWI	GGATC	2 cut(s)	363, 950
AcoI	YGGCCR	1 cut(s)	855
AcuI	CTGAAG	2 cut(s)	141, 752
AcyI	GRCGYC	2 cut(s)	364, 531
AdeI	CACNNNGTG	1 cut(s)	55
AfaI	GTAC	6 cut(s)	272, 461, 491, 709, 899, 920
AfiI	CCNNNNNNNGG	2 cut(s)	574, 928
AflII	CTTAAG	2 cut(s)	74, 572
AgsI	TTSAA	3 cut(s)	310, 598, 1067
AjnI	CCWGG	2 cut(s)	354, 786
AluBI	AGCT	7 cut(s)	41, 125, 252, 385, 520, 551, 830
AluI	AGCT	7 cut(s)	41, 125, 252, 385, 520, 551, 830
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	3 cut(s)	163, 656, 1011
AlwI	GGATC	2 cut(s)	363, 950
AoxI	GGCC	6 cut(s)	59, 129, 244, 789, 855, 1095
ApeKI	GCWGC	7 cut(s)	104, 143, 288, 322, 517, 761, 827
AspS9I	GGNCC	3 cut(s)	91, 245, 1025
AsuHPI	GGTGA	3 cut(s)	623, 944, 1061
AvaII	GGWCC	2 cut(s)	91, 1025
BanII	GRGCYC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	43
BbvCI	CCTCAGC	2 cut(s)	126, 1038
BbvI	GCAGC	7 cut(s)	91, 130, 300, 334, 529, 748, 839
BccI	CCATC	8 cut(s)	140, 203, 572, 677, 847, 904, 1016, 1052
BceAI	ACGGC	3 cut(s)	243, 379, 842
BciT130I	CCWGG	2 cut(s)	356, 788
BciVI	GTATCC	1 cut(s)	752
BcoDI	GTCTC	3 cut(s)	163, 656, 1011
BfaI	CTAG	4 cut(s)	249, 726, 990, 1029
BfmI	CTRYAG	1 cut(s)	253
BfrI	CTTAAG	2 cut(s)	74, 572
BfuI	GTATCC	1 cut(s)	752
BisI	GCNGC	7 cut(s)	105, 144, 289, 323, 518, 762, 828
BlsI	GCNGC	7 cut(s)	106, 145, 290, 324, 519, 763, 829
Bme1390I	CCNGG	2 cut(s)	356, 788
Bme18I	GGWCC	2 cut(s)	91, 1025
BmgT120I	GGNCC	3 cut(s)	91, 245, 1025
BmiI	GGNNCC	1 cut(s)	784
BmrFI	CCNGG	2 cut(s)	356, 788
BmsI	GCATC	4 cut(s)	550, 748, 790, 1024
BplI	GAGNNNNNCTC	1 cut(s)	1097
Bpu10I	CCTNAGC	2 cut(s)	126, 1038
BpuEI	CTTGAG	4 cut(s)	80, 611, 695, 884
BsaBI	GATNNNNATC	1 cut(s)	740
BsaHI	GRCGYC	2 cut(s)	364, 531
BsaJI	CCNNGG	4 cut(s)	219, 684, 711, 786
BsaWI	WCCGGW	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	2 cut(s)	574, 928
Bse8I	GATNNNNATC	1 cut(s)	740
BseBI	CCWGG	2 cut(s)	356, 788
BseDI	CCNNGG	4 cut(s)	219, 684, 711, 786
BseJI	GATNNNNATC	1 cut(s)	740
BseLI	CCNNNNNNNGG	2 cut(s)	574, 928
BseMII	CTCAG	6 cut(s)	117, 741, 963, 1022, 1029, 1113
BseRI	GAGGAG	2 cut(s)	101, 174
BseXI	GCAGC	7 cut(s)	91, 130, 300, 334, 529, 748, 839
BsgI	GTGCAG	1 cut(s)	788
BshFI	GGCC	6 cut(s)	61, 131, 246, 791, 857, 1097
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	424
BslI	CCNNNNNNNGG	2 cut(s)	574, 928
BsmAI	GTCTC	3 cut(s)	163, 656, 1011
BsmBI	CGTCTC	1 cut(s)	163
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	6 cut(s)	61, 131, 246, 791, 857, 1097
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	3 cut(s)	368, 415, 955
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	2 cut(s)	487, 604
BspANI	GGCC	6 cut(s)	61, 131, 246, 791, 857, 1097
BspCNI	CTCAG	6 cut(s)	118, 742, 962, 1021, 1030, 1112
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	784
BspPI	GGATC	2 cut(s)	363, 950
BspTI	CTTAAG	2 cut(s)	74, 572
BsrBI	CCGCTC	1 cut(s)	487
BssECI	CCNNGG	4 cut(s)	219, 684, 711, 786
BssMI	GATC	3 cut(s)	368, 415, 955
BssNI	GRCGYC	2 cut(s)	364, 531
BssT1I	CCWWGG	3 cut(s)	219, 684, 711
Bst2UI	CCWGG	2 cut(s)	356, 788
Bst4CI	ACNGT	3 cut(s)	177, 657, 902
Bst6I	CTCTTC	2 cut(s)	192, 593
BstACI	GRCGYC	2 cut(s)	364, 531
BstAFI	CTTAAG	2 cut(s)	74, 572
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	8 cut(s)	126, 648, 750, 778, 949, 1008, 1038, 1099
BstDSI	CCRYGG	1 cut(s)	219
BstKTI	GATC	3 cut(s)	371, 418, 958
BstMAI	GTCTC	3 cut(s)	163, 656, 1011
BstMBI	GATC	3 cut(s)	368, 415, 955
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstNI	CCWGG	2 cut(s)	356, 788
BstSCI	CCNGG	2 cut(s)	354, 786
BstSFI	CTRYAG	1 cut(s)	253
BstV1I	GCAGC	7 cut(s)	91, 130, 300, 334, 529, 748, 839
BstXI	CCANNNNNNTGG	1 cut(s)	242
BsuI	GTATCC	1 cut(s)	752
BsuRI	GGCC	6 cut(s)	61, 131, 246, 791, 857, 1097
BtgI	CCRYGG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	392
CciI	TCATGA	1 cut(s)	450
Cfr13I	GGNCC	3 cut(s)	91, 245, 1025
CseI	GACGC	1 cut(s)	539
Csp6I	GTAC	6 cut(s)	271, 460, 490, 708, 898, 919
CviAII	CATG	3 cut(s)	220, 319, 451
CviQI	GTAC	6 cut(s)	271, 460, 490, 708, 898, 919
DdeI	CTNAG	8 cut(s)	126, 648, 750, 778, 949, 1008, 1038, 1099
DpnI	GATC	3 cut(s)	370, 417, 957
DpnII	GATC	3 cut(s)	368, 415, 955
DraI	TTTAAA	1 cut(s)	505
DraIII	CACNNNGTG	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	855
Eam1104I	CTCTTC	2 cut(s)	192, 593
EarI	CTCTTC	2 cut(s)	192, 593
EciI	GGCGGA	1 cut(s)	619
Ecl136II	GAGCTC	1 cut(s)	41
Eco130I	CCWWGG	3 cut(s)	219, 684, 711
Eco147I	AGGCCT	1 cut(s)	791
Eco24I	GRGCYC	1 cut(s)	43
Eco47I	GGWCC	2 cut(s)	91, 1025
Eco53kI	GAGCTC	1 cut(s)	41
Eco57I	CTGAAG	2 cut(s)	141, 752
EcoICRI	GAGCTC	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	354, 786
EcoT14I	CCWWGG	3 cut(s)	219, 684, 711
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	3 cut(s)	219, 684, 711
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	3 cut(s)	223, 322, 454
FaiI	YATR	8 cut(s)	152, 206, 221, 320, 342, 447, 452, 837
FalI	AAGNNNNNCTT	2 cut(s)	535, 567
FatI	CATG	3 cut(s)	219, 318, 450
FblI	GTMKAC	2 cut(s)	15, 227
Fnu4HI	GCNGC	7 cut(s)	105, 144, 289, 323, 518, 762, 828
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	7 cut(s)	105, 144, 289, 323, 518, 762, 828
FspBI	CTAG	4 cut(s)	249, 726, 990, 1029
GluI	GCNGC	7 cut(s)	105, 144, 289, 323, 518, 762, 828
HaeIII	GGCC	6 cut(s)	61, 131, 246, 791, 857, 1097
HapII	CCGG	1 cut(s)	424
HgaI	GACGC	1 cut(s)	539
Hin1I	GRCGYC	2 cut(s)	364, 531
Hin1II	CATG	3 cut(s)	223, 322, 454
HindIII	AAGCTT	1 cut(s)	549
HinfI	GANTC	3 cut(s)	224, 410, 974
HpaII	CCGG	1 cut(s)	424
HphI	GGTGA	3 cut(s)	623, 944, 1061
Hpy166II	GTNNAC	2 cut(s)	16, 228
Hpy188I	TCNGA	4 cut(s)	415, 824, 893, 1102
Hpy188III	TCNNGA	6 cut(s)	97, 419, 451, 628, 797, 1010
Hpy8I	GTNNAC	2 cut(s)	16, 228
Hpy99I	CGWCG	1 cut(s)	369
HpyAV	CCTTC	5 cut(s)	233, 295, 304, 949, 1037
HpyCH4III	ACNGT	3 cut(s)	177, 657, 902
HpyCH4IV	ACGT	2 cut(s)	364, 618
HpyCH4V	TGCA	3 cut(s)	322, 769, 1072
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
HpyF3I	CTNAG	8 cut(s)	126, 648, 750, 778, 949, 1008, 1038, 1099
HpySE526I	ACGT	2 cut(s)	364, 618
Hsp92I	GRCGYC	2 cut(s)	364, 531
Hsp92II	CATG	3 cut(s)	223, 322, 454
Kzo9I	GATC	3 cut(s)	368, 415, 955
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	9 cut(s)	341, 368, 437, 547, 755, 773, 800, 995, 1072
Lsp1109I	GCAGC	7 cut(s)	91, 130, 300, 334, 529, 748, 839
LweI	GCATC	4 cut(s)	550, 748, 790, 1024
MaeI	CTAG	4 cut(s)	249, 726, 990, 1029
MaeII	ACGT	2 cut(s)	364, 618
MaeIII	GTNAC	3 cut(s)	78, 154, 419
MalI	GATC	3 cut(s)	370, 417, 957
MbiI	CCGCTC	1 cut(s)	487
MboI	GATC	3 cut(s)	368, 415, 955
MboII	GAAGA	5 cut(s)	179, 203, 432, 610, 745
MfeI	CAATTG	1 cut(s)	635
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	3 cut(s)	349, 635, 832
MlyI	GAGTC	2 cut(s)	233, 968
MmeI	TCCRAC	3 cut(s)	239, 639, 681
MseI	TTAA	4 cut(s)	75, 504, 573, 690
MspCI	CTTAAG	2 cut(s)	74, 572
MspI	CCGG	1 cut(s)	424
MspR9I	CCNGG	2 cut(s)	356, 788
MunI	CAATTG	1 cut(s)	635
Mva1269I	GAATGC	1 cut(s)	291
MvaI	CCWGG	2 cut(s)	356, 788
MwoI	GCNNNNNNNGC	1 cut(s)	391
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	3 cut(s)	368, 415, 955
NlaIII	CATG	3 cut(s)	223, 322, 454
NlaIV	GGNNCC	1 cut(s)	784
NmuCI	GTSAC	2 cut(s)	78, 419
PagI	TCATGA	1 cut(s)	450
PceI	AGGCCT	1 cut(s)	791
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PctI	GAATGC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	410
PkrI	GCNGC	7 cut(s)	106, 145, 290, 324, 519, 763, 829
PleI	GAGTC	2 cut(s)	232, 968
PpsI	GAGTC	2 cut(s)	232, 968
PpuMI	RGGWCCY	1 cut(s)	91
Psp124BI	GAGCTC	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	91
Psp6I	CCWGG	2 cut(s)	354, 786
PspGI	CCWGG	2 cut(s)	354, 786
PspN4I	GGNNCC	1 cut(s)	784
PspPI	GGNCC	3 cut(s)	91, 245, 1025
PspPPI	RGGWCCY	1 cut(s)	91
RsaI	GTAC	6 cut(s)	272, 461, 491, 709, 899, 920
RsaNI	GTAC	6 cut(s)	271, 460, 490, 708, 898, 919
SacI	GAGCTC	1 cut(s)	43
SaqAI	TTAA	4 cut(s)	75, 504, 573, 690
SatI	GCNGC	7 cut(s)	105, 144, 289, 323, 518, 762, 828
Sau3AI	GATC	3 cut(s)	368, 415, 955
Sau96I	GGNCC	3 cut(s)	91, 245, 1025
SchI	GAGTC	2 cut(s)	233, 968
ScrFI	CCNGG	2 cut(s)	356, 788
SduI	GDGCHC	1 cut(s)	43
SfaNI	GCATC	4 cut(s)	550, 748, 790, 1024
SfcI	CTRYAG	1 cut(s)	253
SinI	GGWCC	2 cut(s)	91, 1025
SmlI	CTYRAG	6 cut(s)	74, 95, 572, 626, 674, 863
SmoI	CTYRAG	6 cut(s)	74, 95, 572, 626, 674, 863
Sse9I	AATT	3 cut(s)	349, 635, 832
SseBI	AGGCCT	1 cut(s)	791
SsiI	CCGC	2 cut(s)	487, 604
SspMI	CTAG	4 cut(s)	249, 726, 990, 1029
SstI	GAGCTC	1 cut(s)	43
StuI	AGGCCT	1 cut(s)	791
StyD4I	CCNGG	2 cut(s)	354, 786
StyI	CCWWGG	3 cut(s)	219, 684, 711
TaaI	ACNGT	3 cut(s)	177, 657, 902
TaiI	ACGT	2 cut(s)	367, 621
TaqI	TCGA	2 cut(s)	367, 483
TaqII	GACCGA	1 cut(s)	470
TasI	AATT	3 cut(s)	349, 635, 832
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	4 cut(s)	75, 504, 573, 690
Tru9I	TTAA	4 cut(s)	75, 504, 573, 690
TseFI	GTSAC	2 cut(s)	78, 419
TseI	GCWGC	7 cut(s)	104, 143, 288, 322, 517, 761, 827
Tsp45I	GTSAC	2 cut(s)	78, 419
TspDTI	ATGAA	4 cut(s)	284, 417, 423, 594
Vha464I	CTTAAG	2 cut(s)	74, 572
VpaK11BI	GGWCC	2 cut(s)	91, 1025
XmiI	GTMKAC	2 cut(s)	15, 227
XspI	CTAG	4 cut(s)	249, 726, 990, 1029
ZraI	GACGTC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.