Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0011515

Physical Location & Seq

Genomic Coordinates Reverse (-)

7445534 .. 7446665

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1016100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCTGTTGCACTTGGATAGGGAGAGAGAGATGTCGGTGATGGTATCGGCTTTGACGCATGTGGTGGCCGGAGATGATGATGAGGTGGCTGCTGCTGCACCTGCATGTGGGAATTCTGATTCAGGGACTAGTTCATGGGGTAGTGTTGGAACTAAGAGAGGAAGAGAAGAAGAGGAAGGCGGCAGCGGCCGTGGCGGCGCTCCCTTGTTCGAGTCGGTTATAAGGCTCTGTAGAACTTTTGGTGAATTTCCACAGCAGATTCAGCGGACATCCTCTGCTTTTGGAGAAGGCTCAAGCGTACGAACAAGGACAACAGCGCCTACACAAACAGCGTTCCCTCCAACTCCAATTAGTGCTTATGTTTACAGTGCACCCGAAATAGCAGAGCCAATGAGGAGAAGATACAGAGGAGTGAGACAAAGGCCGTGGGGCAAATGGGCGGCTGAGATTAGAGACCCCTTCAAGGCCGCAAGGGTGTGGCTAGGCACCTTCGAAACAGCCGAAGCCGCCGCCCAAGCCTACGACCAAGCTGCCCTCCGATTCAGAGGCAACAAGGCCAAACTCAACTTCCCAGAAAACGTCAGACTCCTTTTGTCAACCGCCGTTGCTCCGCCGACCCAGTTGACTCATTCTGCTCCTCAAAATACCCTTTTGTCCGTTGCCACATCCACTGAGTCGATTGTTCACTCTCATGCATTCCATTCATCGGAAGAGGTGGCTTCAACCACAAGAAATCTTGTTAGCTATTCTATTTTGGCTGATATGCAGAGGCAACCCAACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0033993 GO:0034284 GO:0042221 GO:0043207 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

262

Amino Acids

28.36

Weight (kDa)

7.86

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	134 - 183	8.6e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23350
malus_domestica	MD01G1016100.v1.1 MD15G1334900.v1.1
prunus_persica	Prupe.6G165700_v2.0.a1
pyrus_communis	pycom01g04730 pycom15g29040
rosa_chinensis	RchiOBHm_Chr2g0118211 RchiOBHm_Chr2g0118251
rosa_laevigata	RLG00000018404
rosa_multiflora	Rmu_sc0001925.1_g000007
rosa_roxburghii	Rroxscaffold_2G00125050 Rroxscaffold_2G00125730
rosa_rugosa	Rorug02G0217300.1
rosa_samantha	Rh2AG273500 Rh2BG285700 Rh2DG281500 Rh2DG299500 Rh2DG299600 Rh2DG299700
rosa_wichuraiana	Rw2G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AarI	CACCTGC	1 cut(s)	109
Acc36I	ACCTGC	1 cut(s)	109
AccB1I	GGYRCC	1 cut(s)	485
AcoI	YGGCCR	2 cut(s)	66, 187
AcsI	RAATTY	2 cut(s)	112, 245
AfaI	GTAC	1 cut(s)	300
AfiI	CCNNNNNNNGG	3 cut(s)	107, 463, 706
AgsI	TTSAA	2 cut(s)	463, 723
AhlI	ACTAGT	1 cut(s)	128
AjuI	GAANNNNNNNTTGG	2 cut(s)	551, 583
AluBI	AGCT	2 cut(s)	530, 744
AluI	AGCT	2 cut(s)	530, 744
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	2 cut(s)	409, 447
Alw44I	GTGCAC	1 cut(s)	369
AoxI	GGCC	5 cut(s)	66, 187, 422, 465, 555
ApaLI	GTGCAC	1 cut(s)	369
ApeKI	GCWGC	5 cut(s)	89, 92, 95, 183, 530
ApoI	RAATTY	2 cut(s)	112, 245
AspLEI	GCGC	2 cut(s)	200, 319
AsuHPI	GGTGA	2 cut(s)	49, 254
AsuII	TTCGAA	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	485
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	5 cut(s)	76, 79, 82, 195, 517
BccI	CCATC	1 cut(s)	34
BceAI	ACGGC	3 cut(s)	174, 409, 587
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BcoDI	GTCTC	2 cut(s)	409, 447
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	2 cut(s)	129, 482
BfmI	CTRYAG	1 cut(s)	229
BfoI	RGCGCY	2 cut(s)	201, 320
BfuAI	ACCTGC	1 cut(s)	109
BglI	GCCNNNNNGGC	1 cut(s)	195
BmiI	GGNNCC	1 cut(s)	487
BmrI	ACTGGG	1 cut(s)	613
BmuI	ACTGGG	1 cut(s)	613
Bpu14I	TTCGAA	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	277
BsaI	GGTCTC	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	190, 425
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 463, 706
Bse1I	ACTGG	1 cut(s)	619
BseDI	CCNNGG	2 cut(s)	190, 425
BseGI	GGATG	2 cut(s)	269, 665
BseLI	CCNNNNNNNGG	3 cut(s)	107, 463, 706
BseMII	CTCAG	2 cut(s)	435, 663
BseNI	ACTGG	1 cut(s)	619
BseRI	GAGGAG	3 cut(s)	409, 423, 627
BseSI	GKGCMC	1 cut(s)	373
BseX3I	CGGCCG	1 cut(s)	187
BseXI	GCAGC	5 cut(s)	76, 79, 82, 195, 517
BsgI	GTGCAG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	5 cut(s)	68, 189, 424, 467, 557
BshNI	GGYRCC	1 cut(s)	485
BsiEI	CGRYCG	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	373
BsiSI	CCGG	1 cut(s)	69
BsiWI	CGTACG	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	3 cut(s)	107, 463, 706
BsmAI	GTCTC	2 cut(s)	409, 447
BsmFI	GGGAC	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	695
BsnI	GGCC	5 cut(s)	68, 189, 424, 467, 557
Bso31I	GGTCTC	1 cut(s)	447
Bsp119I	TTCGAA	1 cut(s)	492
Bsp1286I	GDGCHC	1 cut(s)	373
BspANI	GGCC	5 cut(s)	68, 189, 424, 467, 557
BspCNI	CTCAG	2 cut(s)	436, 664
BspLI	GGNNCC	1 cut(s)	487
BspMI	ACCTGC	1 cut(s)	109
BspT104I	TTCGAA	1 cut(s)	492
BspT107I	GGYRCC	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	619
BssECI	CCNNGG	2 cut(s)	190, 425
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	3 cut(s)	157, 165, 705
BstBI	TTCGAA	1 cut(s)	492
BstDEI	CTNAG	3 cut(s)	153, 444, 672
BstDSI	CCRYGG	2 cut(s)	190, 425
BstF5I	GGATG	2 cut(s)	269, 665
BstH2I	RGCGCY	2 cut(s)	201, 320
BstHHI	GCGC	2 cut(s)	200, 319
BstMAI	GTCTC	2 cut(s)	409, 447
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	8 cut(s)	95, 101, 186, 192, 195, 262, 506, 515
BstNSI	RCATGY	2 cut(s)	62, 108
BstSFI	CTRYAG	1 cut(s)	229
BstSLI	GKGCMC	1 cut(s)	373
BstV1I	GCAGC	5 cut(s)	76, 79, 82, 195, 517
BstZI	CGGCCG	1 cut(s)	187
BsuRI	GGCC	5 cut(s)	68, 189, 424, 467, 557
BtgI	CCRYGG	2 cut(s)	190, 425
BtsCI	GGATG	2 cut(s)	269, 665
BtsIMutI	CAGTG	2 cut(s)	373, 669
BveI	ACCTGC	1 cut(s)	109
CfoI	GCGC	2 cut(s)	200, 319
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	299
CspCI	CAANNNNNGTGG	2 cut(s)	407, 442
CviAII	CATG	5 cut(s)	59, 105, 135, 692, 783
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	3 cut(s)	153, 444, 672
EaeI	YGGCCR	2 cut(s)	66, 187
EagI	CGGCCG	1 cut(s)	187
Eam1104I	CTCTTC	3 cut(s)	157, 165, 705
EarI	CTCTTC	3 cut(s)	157, 165, 705
EciI	GGCGGA	1 cut(s)	600
EclXI	CGGCCG	1 cut(s)	187
Eco31I	GGTCTC	1 cut(s)	447
Eco52I	CGGCCG	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	697
FaeI	CATG	5 cut(s)	62, 108, 138, 695, 786
FaiI	YATR	8 cut(s)	60, 106, 136, 221, 360, 693, 764, 784
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	5 cut(s)	58, 104, 134, 691, 782
FokI	GGATG	2 cut(s)	256, 652
FspBI	CTAG	2 cut(s)	129, 482
GlaI	GCGC	2 cut(s)	199, 318
HaeII	RGCGCY	2 cut(s)	201, 320
HaeIII	GGCC	5 cut(s)	68, 189, 424, 467, 557
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	2 cut(s)	200, 319
Hin1II	CATG	5 cut(s)	62, 108, 138, 695, 786
Hin6I	GCGC	2 cut(s)	198, 317
HinP1I	GCGC	2 cut(s)	198, 317
HincII	GTYRAC	2 cut(s)	597, 624
HindII	GTYRAC	2 cut(s)	597, 624
HinfI	GANTC	7 cut(s)	119, 212, 259, 540, 585, 625, 674
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	2 cut(s)	49, 254
Hpy166II	GTNNAC	5 cut(s)	364, 371, 597, 624, 685
Hpy188I	TCNGA	5 cut(s)	118, 539, 545, 584, 709
Hpy8I	GTNNAC	5 cut(s)	364, 371, 597, 624, 685
HpyAV	CCTTC	4 cut(s)	170, 281, 469, 499
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	6 cut(s)	10, 98, 104, 371, 695, 766
HpyF10VI	GCNNNNNNNGC	8 cut(s)	95, 101, 186, 192, 195, 262, 506, 515
HpyF3I	CTNAG	3 cut(s)	153, 444, 672
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	5 cut(s)	62, 108, 138, 695, 786
HspAI	GCGC	2 cut(s)	198, 317
LmnI	GCTCC	3 cut(s)	205, 613, 640
LpnPI	CCDG	5 cut(s)	82, 108, 114, 585, 632
Lsp1109I	GCAGC	5 cut(s)	76, 79, 82, 195, 517
MaeI	CTAG	2 cut(s)	129, 482
MaeII	ACGT	1 cut(s)	579
MboII	GAAGA	5 cut(s)	174, 179, 182, 411, 722
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	3 cut(s)	112, 245, 348
MlyI	GAGTC	4 cut(s)	221, 579, 619, 683
MmeI	TCCRAC	2 cut(s)	127, 365
Mph1103I	ATGCAT	1 cut(s)	697
MslI	CAYNNNNRTG	2 cut(s)	103, 690
MspA1I	CMGCKG	2 cut(s)	186, 265
MspI	CCGG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	695
MwoI	GCNNNNNNNGC	8 cut(s)	95, 101, 186, 192, 195, 262, 506, 515
NlaIII	CATG	5 cut(s)	62, 108, 138, 695, 786
NlaIV	GGNNCC	1 cut(s)	487
NsiI	ATGCAT	1 cut(s)	697
NspI	RCATGY	2 cut(s)	62, 108
NspV	TTCGAA	1 cut(s)	492
PaqCI	CACCTGC	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PctI	GAATGC	1 cut(s)	695
PfeI	GAWTC	3 cut(s)	119, 259, 540
Pfl23II	CGTACG	1 cut(s)	298
PleI	GAGTC	4 cut(s)	220, 579, 619, 682
PpsI	GAGTC	4 cut(s)	220, 579, 619, 682
PsiI	TTATAA	1 cut(s)	221
PspLI	CGTACG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	487
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
RseI	CAYNNNNRTG	2 cut(s)	103, 690
SchI	GAGTC	4 cut(s)	221, 579, 619, 683
SduI	GDGCHC	1 cut(s)	373
SetI	ASST	7 cut(s)	87, 103, 491, 532, 582, 717, 746
SfcI	CTRYAG	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	492
SmiMI	CAYNNNNRTG	2 cut(s)	103, 690
SmlI	CTYRAG	1 cut(s)	292
SmoI	CTYRAG	1 cut(s)	292
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	3 cut(s)	112, 245, 348
SspMI	CTAG	2 cut(s)	129, 482
TaaI	ACNGT	1 cut(s)	368
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	3 cut(s)	210, 492, 677
TasI	AATT	3 cut(s)	112, 245, 348
TauI	GCSGC	7 cut(s)	183, 189, 198, 443, 470, 509, 512
TfiI	GAWTC	3 cut(s)	119, 259, 540
TscAI	CASTG	2 cut(s)	373, 676
TseI	GCWGC	5 cut(s)	89, 92, 95, 183, 530
TspDTI	ATGAA	2 cut(s)	123, 693
TspGWI	ACGGA	1 cut(s)	646
TspRI	CASTG	2 cut(s)	373, 676
VneI	GTGCAC	1 cut(s)	369
XapI	RAATTY	2 cut(s)	112, 245
XceI	RCATGY	2 cut(s)	62, 108
XspI	CTAG	2 cut(s)	129, 482
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.