Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011515

Physical Location & Seq

Genomic Coordinates Forward (+)

16612793 .. 16615223

Gene Structure 2431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G165700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTGTGTGCTAAAGGTGGCGGAAAAAGACCAACGTGCCGCAAGGCATAGCAATATTGGGACAGAGCATAGCATTGAAGAATGGCTCTATGAGCCCCTAGTTTTTTCACAACAGCTGCGGCAGCGACAACGACAACGCGGGGGCGGCAGCGGTGGTGGAGGAGGAGGGAGTGAAATATTGGCTTCCGCCGGGTCGTCAATGCTGCTGCGGTTGGATAGGGAGAGAGAGATGTCGGCCATGGTATCGGCTTTGGCGCATGTGGTGGCTGGGGATGAGGAGCTGGCAGCTGCAGAGAGTAGTTTGGTAACTAATAGACAGAGTGAAGATGTTGGTGGTGGTTTGATTTCATCAAGCGTAGGTGGTTCGGATTCTGGGACGAAGAGAGGACGAGAAGAAGAGGAAGGTGGTGGTGGCCAGTCGGTTACTAGGCTTTGTAGAGCTTTTGGTGAATTTCCAGAGCAGAGCTCTTCCCCTGTTTTAGGAGAAGGCTCAAGCAAAACACCACCAACACAGACAGCATTCCCTCCAAGCACGTTTGTATACAGCGCTACCCAAATAGCAGAACCAATAAGAAGAAGATACAGAGGAGTGAGGCAGAGGCCATGGGGCAAATGGGCAGCTGAAATCAGAGATCCCTTCAAGGCTGCAAGAGTGTGGCTAGGCACATTTGAAACAGCAGAGGCCGCTGCCCAAGCCTACGACGAAGCCGCCCTCCGGTTCAGGGGCAACAAGGCCAAGCTCAACTTCCCCGAAAACGTCCGGCTCCGAACACCGATTGCCGATTCTCCGGTGACCCAACTGACCAATTCTGCTCCTCCCAATACCCTTTTGTCCGTTGCTACATCCACCGAGCCTATTGTCCACTCTCAAGCATTCCAATCCATGCAGCATTCTTCTCATGAGGCTTCAAGAAATCTTCTAGGCTACTGTAAGCCGGTTGATGTGCAGAGGCAGCAACCTATGAGCCTTTATGATCAGATGCTTCTGTCATCCTCTGCAACTCCATCTGTTTCTTCATCTTCTTCTTCTCCACTTGCCTCCTCTGTTTCTTCATCTTCTTCTTCGCCACCACCACCTGCTTTCTCTTCACTTTTTTGGACTCAGTCTTCGCTTCCCCTGAGACCAGCCACAGGTGATCAGAATAGTACAGCTGCTGATTTTCAATCGCCGCAATGGTCCAGCTCTAGTCATTATAGTGCCCCCTTCTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0033993 GO:0034284 GO:0042221 GO:0043207 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

405

Amino Acids

43.31

Weight (kDa)

7.07

Isoelectric Point (pI)

71.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23350
malus_domestica	MD01G1016100.v1.1 MD15G1334900.v1.1
prunus_persica	Prupe.6G165700_v2.0.a1
pyrus_communis	pycom01g04730 pycom15g29040
rosa_chinensis	RchiOBHm_Chr2g0118211 RchiOBHm_Chr2g0118251
rosa_laevigata	RLG00000018404
rosa_multiflora	Rmu_sc0001925.1_g000007
rosa_roxburghii	Rroxscaffold_2G00125050 Rroxscaffold_2G00125730
rosa_rugosa	Rorug02G0217300.1
rosa_samantha	Rh2AG273500 Rh2BG285700 Rh2DG281500 Rh2DG299500 Rh2DG299600 Rh2DG299700
rosa_wichuraiana	Rw2G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1084
Acc36I	ACCTGC	1 cut(s)	1084
AccI	GTMKAC	1 cut(s)	540
AccII	CGCG	1 cut(s)	138
AclWI	GGATC	1 cut(s)	626
AcoI	YGGCCR	2 cut(s)	234, 412
AcsI	RAATTY	1 cut(s)	449
AfaI	GTAC	1 cut(s)	1147
AfeI	AGCGCT	1 cut(s)	547
AfiI	CCNNNNNNNGG	4 cut(s)	479, 714, 721, 1130
AgsI	TTSAA	5 cut(s)	77, 640, 671, 909, 1163
AjuI	GAANNNNNNNTTGG	2 cut(s)	728, 760
AluBI	AGCT	9 cut(s)	115, 280, 287, 440, 465, 620, 739, 1151, 1182
AluI	AGCT	9 cut(s)	115, 280, 287, 440, 465, 620, 739, 1151, 1182
Alw21I	GWGCWC	1 cut(s)	467
Alw26I	GTCTC	1 cut(s)	1114
AlwI	GGATC	1 cut(s)	626
AlwNI	CAGNNNCTG	1 cut(s)	1154
Aor51HI	AGCGCT	1 cut(s)	547
AoxI	GGCC	5 cut(s)	234, 412, 599, 681, 732
ApoI	RAATTY	1 cut(s)	449
ArsI	GACNNNNNNTTYG	2 cut(s)	1090, 1122
AspLEI	GCGC	2 cut(s)	256, 548
AspS9I	GGNCC	1 cut(s)	1176
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	3 cut(s)	458, 802, 1145
AvaII	GGWCC	1 cut(s)	1176
BaeGI	GKGCMC	1 cut(s)	1201
BalI	TGGCCA	1 cut(s)	414
BanII	GRGCYC	2 cut(s)	96, 467
BbsI	GAAGAC	1 cut(s)	1098
Bbv12I	GWGCWC	1 cut(s)	467
BccI	CCATC	1 cut(s)	1012
BclI	TGATCA	2 cut(s)	973, 1135
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	1114
BfaI	CTAG	5 cut(s)	98, 426, 659, 920, 1185
BfmI	CTRYAG	1 cut(s)	288
BfoI	RGCGCY	1 cut(s)	549
BfuAI	ACCTGC	1 cut(s)	1084
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	1176
BmgT120I	GGNCC	1 cut(s)	1176
BmiI	GGNNCC	1 cut(s)	764
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	1 cut(s)	969
BpiI	GAAGAC	1 cut(s)	1098
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BpuEI	CTTGAG	3 cut(s)	475, 852, 1192
BpuMI	CCSGG	1 cut(s)	190
BsaI	GGTCTC	1 cut(s)	1114
BsaJI	CCNNGG	2 cut(s)	237, 602
BsaWI	WCCGGW	2 cut(s)	714, 787
Bsc4I	CCNNNNNNNGG	4 cut(s)	479, 714, 721, 1130
Bse118I	RCCGGY	1 cut(s)	934
Bse1I	ACTGG	1 cut(s)	415
Bse3DI	GCAATG	1 cut(s)	1178
BseDI	CCNNGG	2 cut(s)	237, 602
BseGI	GGATG	3 cut(s)	277, 842, 989
BseLI	CCNNNNNNNGG	4 cut(s)	479, 714, 721, 1130
BseMI	GCAATG	1 cut(s)	1178
BseMII	CTCAG	2 cut(s)	1109, 1115
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	6 cut(s)	174, 177, 290, 600, 804, 1030
BseSI	GKGCMC	1 cut(s)	1201
BseYI	CCCAGC	1 cut(s)	266
BsgI	GTGCAG	1 cut(s)	965
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	5 cut(s)	236, 414, 601, 683, 734
BsiHKAI	GWGCWC	1 cut(s)	467
BsiSI	CCGG	5 cut(s)	189, 715, 760, 788, 935
BslFI	GGGAC	2 cut(s)	73, 388
BslI	CCNNNNNNNGG	4 cut(s)	479, 714, 721, 1130
BsmAI	GTCTC	1 cut(s)	1114
BsmFI	GGGAC	2 cut(s)	73, 388
BsmI	GAATGC	3 cut(s)	518, 872, 889
BsnI	GGCC	5 cut(s)	236, 414, 601, 683, 734
Bso31I	GGTCTC	1 cut(s)	1114
Bsp1286I	GDGCHC	3 cut(s)	96, 467, 1201
Bsp143I	GATC	3 cut(s)	631, 973, 1135
Bsp19I	CCATGG	2 cut(s)	237, 602
BspANI	GGCC	5 cut(s)	236, 414, 601, 683, 734
BspCNI	CTCAG	2 cut(s)	1110, 1114
BspFNI	CGCG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	898
BspLI	GGNNCC	1 cut(s)	764
BspMAI	CTGCAG	1 cut(s)	292
BspMI	ACCTGC	1 cut(s)	1084
BspPI	GGATC	1 cut(s)	626
BspQI	GCTCTTC	1 cut(s)	472
BspTNI	GGTCTC	1 cut(s)	1114
BsrDI	GCAATG	1 cut(s)	1178
BsrFI	RCCGGY	1 cut(s)	934
BsrI	ACTGG	1 cut(s)	415
BssAI	RCCGGY	1 cut(s)	934
BssECI	CCNNGG	2 cut(s)	237, 602
BssMI	GATC	3 cut(s)	631, 973, 1135
BssNAI	GTATAC	1 cut(s)	541
BssT1I	CCWWGG	2 cut(s)	237, 602
Bst1107I	GTATAC	1 cut(s)	541
Bst4CI	ACNGT	1 cut(s)	929
Bst6I	CTCTTC	4 cut(s)	374, 390, 472, 1090
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	2 cut(s)	1101, 1118
BstDSI	CCRYGG	2 cut(s)	237, 602
BstEII	GGTNACC	1 cut(s)	790
BstENI	CCTNNNNNAGG	1 cut(s)	477
BstF5I	GGATG	3 cut(s)	277, 842, 989
BstFNI	CGCG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	2 cut(s)	256, 548
BstKTI	GATC	3 cut(s)	634, 976, 1138
BstMAI	GTCTC	1 cut(s)	1114
BstMBI	GATC	3 cut(s)	631, 973, 1135
BstMWI	GCNNNNNNNGC	6 cut(s)	91, 121, 144, 683, 692, 952
BstNSI	RCATGY	1 cut(s)	260
BstPI	GGTNACC	1 cut(s)	790
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	288
BstSLI	GKGCMC	1 cut(s)	1201
BstUI	CGCG	1 cut(s)	138
BstV2I	GAAGAC	1 cut(s)	1098
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
BstZ17I	GTATAC	1 cut(s)	541
BsuRI	GGCC	5 cut(s)	236, 414, 601, 683, 734
BtgI	CCRYGG	2 cut(s)	237, 602
BtsCI	GGATG	3 cut(s)	277, 842, 989
BveI	ACCTGC	1 cut(s)	1084
Cac8I	GCNNGC	1 cut(s)	282
CaiI	CAGNNNCTG	1 cut(s)	1154
CciI	TCATGA	1 cut(s)	898
CfoI	GCGC	2 cut(s)	256, 548
Cfr10I	RCCGGY	1 cut(s)	934
Cfr13I	GGNCC	1 cut(s)	1176
Csp6I	GTAC	1 cut(s)	1146
CviAII	CATG	5 cut(s)	238, 257, 603, 883, 899
CviQI	GTAC	1 cut(s)	1146
DdeI	CTNAG	2 cut(s)	1101, 1118
DpnI	GATC	3 cut(s)	633, 975, 1137
DpnII	GATC	3 cut(s)	631, 973, 1135
EaeI	YGGCCR	2 cut(s)	234, 412
Eam1104I	CTCTTC	4 cut(s)	374, 390, 472, 1090
EarI	CTCTTC	4 cut(s)	374, 390, 472, 1090
EciI	GGCGGA	2 cut(s)	35, 175
Ecl136II	GAGCTC	1 cut(s)	465
Eco130I	CCWWGG	2 cut(s)	237, 602
Eco24I	GRGCYC	2 cut(s)	96, 467
Eco31I	GGTCTC	1 cut(s)	1114
Eco47I	GGWCC	1 cut(s)	1176
Eco47III	AGCGCT	1 cut(s)	547
Eco53kI	GAGCTC	1 cut(s)	465
Eco91I	GGTNACC	1 cut(s)	790
EcoICRI	GAGCTC	1 cut(s)	465
EcoNI	CCTNNNNNAGG	1 cut(s)	477
EcoO65I	GGTNACC	1 cut(s)	790
EcoT14I	CCWWGG	2 cut(s)	237, 602
EcoT38I	GRGCYC	2 cut(s)	96, 467
ErhI	CCWWGG	2 cut(s)	237, 602
FaeI	CATG	5 cut(s)	241, 260, 606, 886, 902
FalI	AAGNNNNNCTT	2 cut(s)	728, 760
FaqI	GGGAC	2 cut(s)	73, 388
FatI	CATG	5 cut(s)	237, 256, 602, 882, 898
FauI	CCCGC	1 cut(s)	131
FbaI	TGATCA	2 cut(s)	973, 1135
FblI	GTMKAC	1 cut(s)	540
FokI	GGATG	3 cut(s)	284, 829, 976
FriOI	GRGCYC	2 cut(s)	96, 467
FspBI	CTAG	5 cut(s)	98, 426, 659, 920, 1185
GlaI	GCGC	2 cut(s)	255, 547
GsaI	CCCAGC	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	5 cut(s)	236, 414, 601, 683, 734
HapII	CCGG	5 cut(s)	189, 715, 760, 788, 935
HhaI	GCGC	2 cut(s)	256, 548
Hin1II	CATG	5 cut(s)	241, 260, 606, 886, 902
Hin6I	GCGC	2 cut(s)	254, 546
HinP1I	GCGC	2 cut(s)	254, 546
HinfI	GANTC	3 cut(s)	368, 782, 1099
HpaII	CCGG	5 cut(s)	189, 715, 760, 788, 935
HphI	GGTGA	3 cut(s)	458, 802, 1145
Hpy166II	GTNNAC	2 cut(s)	541, 862
Hpy188I	TCNGA	5 cut(s)	367, 629, 767, 978, 1140
Hpy188III	TCNNGA	4 cut(s)	455, 899, 909, 1209
Hpy8I	GTNNAC	2 cut(s)	541, 862
Hpy99I	CGWCG	1 cut(s)	704
HpyAV	CCTTC	4 cut(s)	395, 479, 646, 1213
HpyCH4III	ACNGT	1 cut(s)	929
HpyCH4IV	ACGT	3 cut(s)	34, 533, 756
HpyCH4V	TGCA	5 cut(s)	290, 647, 886, 946, 998
HpyF10VI	GCNNNNNNNGC	6 cut(s)	91, 121, 144, 683, 692, 952
HpyF3I	CTNAG	2 cut(s)	1101, 1118
HpySE526I	ACGT	3 cut(s)	34, 533, 756
Hsp92II	CATG	5 cut(s)	241, 260, 606, 886, 902
HspAI	GCGC	2 cut(s)	254, 546
Ksp22I	TGATCA	2 cut(s)	973, 1135
Kzo9I	GATC	3 cut(s)	631, 973, 1135
LguI	GCTCTTC	1 cut(s)	472
LmnI	GCTCC	3 cut(s)	277, 768, 817
LweI	GCATC	1 cut(s)	969
MaeI	CTAG	5 cut(s)	98, 426, 659, 920, 1185
MaeII	ACGT	3 cut(s)	34, 533, 756
MaeIII	GTNAC	3 cut(s)	304, 421, 790
MalI	GATC	3 cut(s)	633, 975, 1137
MboI	GATC	3 cut(s)	631, 973, 1135
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	3 cut(s)	96, 467, 1201
MlsI	TGGCCA	1 cut(s)	414
MluCI	AATT	2 cut(s)	449, 805
MluNI	TGGCCA	1 cut(s)	414
MlyI	GAGTC	1 cut(s)	1093
MmeI	TCCRAC	1 cut(s)	192
Mox20I	TGGCCA	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	414
MslI	CAYNNNNRTG	1 cut(s)	1194
Msp20I	TGGCCA	1 cut(s)	414
MspA1I	CMGCKG	6 cut(s)	115, 150, 287, 620, 686, 1151
MspI	CCGG	5 cut(s)	189, 715, 760, 788, 935
MspR9I	CCNGG	1 cut(s)	190
Mva1269I	GAATGC	3 cut(s)	518, 872, 889
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	6 cut(s)	91, 121, 144, 683, 692, 952
NciI	CCSGG	1 cut(s)	190
NcoI	CCATGG	2 cut(s)	237, 602
NdeII	GATC	3 cut(s)	631, 973, 1135
NlaIII	CATG	5 cut(s)	241, 260, 606, 886, 902
NlaIV	GGNNCC	1 cut(s)	764
NmuCI	GTSAC	1 cut(s)	790
NspI	RCATGY	1 cut(s)	260
PagI	TCATGA	1 cut(s)	898
PaqCI	CACCTGC	1 cut(s)	1084
PciSI	GCTCTTC	1 cut(s)	472
PctI	GAATGC	3 cut(s)	518, 872, 889
PfeI	GAWTC	2 cut(s)	368, 782
PflFI	GACNNNGTC	1 cut(s)	1102
PleI	GAGTC	1 cut(s)	1093
PpsI	GAGTC	1 cut(s)	1093
Psp124BI	GAGCTC	1 cut(s)	467
PspEI	GGTNACC	1 cut(s)	790
PspFI	CCCAGC	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	764
PspPI	GGNCC	1 cut(s)	1176
PstI	CTGCAG	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	1154
PsuI	RGATCY	1 cut(s)	631
PsyI	GACNNNGTC	1 cut(s)	1102
PvuII	CAGCTG	4 cut(s)	115, 287, 620, 1151
RsaI	GTAC	1 cut(s)	1147
RsaNI	GTAC	1 cut(s)	1146
RseI	CAYNNNNRTG	1 cut(s)	1194
SacI	GAGCTC	1 cut(s)	467
SapI	GCTCTTC	1 cut(s)	472
Sau3AI	GATC	3 cut(s)	631, 973, 1135
Sau96I	GGNCC	1 cut(s)	1176
SchI	GAGTC	1 cut(s)	1093
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	3 cut(s)	96, 467, 1201
SfaNI	GCATC	1 cut(s)	969
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	1176
SmiMI	CAYNNNNRTG	1 cut(s)	1194
SmlI	CTYRAG	3 cut(s)	490, 867, 1207
SmoI	CTYRAG	3 cut(s)	490, 867, 1207
Sse9I	AATT	2 cut(s)	449, 805
SspI	AATATT	2 cut(s)	55, 177
SspMI	CTAG	5 cut(s)	98, 426, 659, 920, 1185
SstI	GAGCTC	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	2 cut(s)	237, 602
TaaI	ACNGT	1 cut(s)	929
TaiI	ACGT	3 cut(s)	37, 536, 759
TasI	AATT	2 cut(s)	449, 805
TatI	WGTACW	1 cut(s)	1145
TauI	GCSGC	6 cut(s)	41, 121, 147, 686, 710, 1171
TfiI	GAWTC	2 cut(s)	368, 782
TseFI	GTSAC	1 cut(s)	790
Tsp45I	GTSAC	1 cut(s)	790
TspDTI	ATGAA	3 cut(s)	336, 1005, 1041
TspGWI	ACGGA	1 cut(s)	823
Tth111I	GACNNNGTC	1 cut(s)	1102
VpaK11BI	GGWCC	1 cut(s)	1176
XagI	CCTNNNNNAGG	1 cut(s)	477
XapI	RAATTY	1 cut(s)	449
XceI	RCATGY	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	609
XmiI	GTMKAC	1 cut(s)	540
XspI	CTAG	5 cut(s)	98, 426, 659, 920, 1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.