Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011515

Physical Location & Seq

Genomic Coordinates Reverse (-)

35612192 .. 35612725

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG299700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTGTTTTCTAAAGGTGGCGAATCCGAGCAGAGACAGAGACGACGAGCGCGCCGCCGCGGCGGGGCAAGGAAATGAGACCGACCAAACTCATGAACAGAGAGACCTTATCGAAGAGTGGCTGCTATTTGAGCCCCTGCTTTTTTCTCAGCAACAACGACGTGGTGCTGGTGGTAGTAGTGGTGGTGGTGGTGCTGGAGGAATATTAGCTTCGTCGTCAATGCTGTTGCGGTTGGATAGGGAGAGGGAGATGTCGGCAATGGTTTCGGCTCTGACGCATGTGGTGACAGGAGAGGAGCAGACTAGGTTTGATGTGGTTAACGGTTCGGATTCGCCGGCGGGGAATGGTTTGTGCGGTGGCGTTGGAAGTAAGAGAGAAAGAGAAGAGGAAGGAGGTGGTGGTGGACAGAACATGTCTGAGTCGGTTTCAAGGCTTCCACAACAGGGCTCACCTTCATCCTCCTCTGTTTTTCCAGGTTTTTTTTTTTTTCTTGGGTGTCATTTTTTACTGCTAATTTTTCACGTAATTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0033993 GO:0034284 GO:0042221 GO:0043207 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

177

Amino Acids

18.91

Weight (kDa)

4.97

Isoelectric Point (pI)

63.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23350
malus_domestica	MD01G1016100.v1.1 MD15G1334900.v1.1
prunus_persica	Prupe.6G165700_v2.0.a1
pyrus_communis	pycom01g04730 pycom15g29040
rosa_chinensis	RchiOBHm_Chr2g0118211 RchiOBHm_Chr2g0118251
rosa_laevigata	RLG00000018404
rosa_multiflora	Rmu_sc0001925.1_g000007
rosa_roxburghii	Rroxscaffold_2G00125050 Rroxscaffold_2G00125730
rosa_rugosa	Rorug02G0217300.1
rosa_samantha	Rh2AG273500 Rh2BG285700 Rh2DG281500 Rh2DG299500 Rh2DG299600 Rh2DG299700
rosa_wichuraiana	Rw2G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	51, 59
AciI	CCGC	7 cut(s)	54, 57, 59, 62, 229, 338, 354
AfiI	CCNNNNNNNGG	2 cut(s)	63, 443
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	1 cut(s)	429
AjiI	CACGTC	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
Alw26I	GTCTC	4 cut(s)	27, 33, 71, 96
ApeKI	GCWGC	1 cut(s)	121
AspLEI	GCGC	2 cut(s)	51, 53
AsuHPI	GGTGA	2 cut(s)	295, 441
BanII	GRGCYC	2 cut(s)	135, 449
BbvI	GCAGC	1 cut(s)	108
BcgI	CGANNNNNNTGC	2 cut(s)	246, 280
BciT130I	CCWGG	1 cut(s)	474
BcoDI	GTCTC	4 cut(s)	27, 33, 71, 96
BfaI	CTAG	2 cut(s)	303, 532
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	4 cut(s)	54, 57, 60, 122
BlsI	GCNGC	4 cut(s)	55, 58, 61, 123
Bme1390I	CCNGG	1 cut(s)	474
BmgBI	CACGTC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	474
BpmI	CTGGAG	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	523
BsaI	GGTCTC	2 cut(s)	71, 96
BsaJI	CCNNGG	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 443
Bse118I	RCCGGY	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	455
BseLI	CCNNNNNNNGG	2 cut(s)	63, 443
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	161, 408
BsePI	GCGCGC	1 cut(s)	49
BseRI	GAGGAG	2 cut(s)	308, 451
BseXI	GCAGC	1 cut(s)	108
Bsh1236I	CGCG	2 cut(s)	51, 59
BsiSI	CCGG	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	63, 443
BsmAI	GTCTC	4 cut(s)	27, 33, 71, 96
BsmBI	CGTCTC	1 cut(s)	33
Bso31I	GGTCTC	2 cut(s)	71, 96
Bsp1286I	GDGCHC	2 cut(s)	135, 449
BspACI	CCGC	7 cut(s)	54, 57, 59, 62, 229, 338, 354
BspCNI	CTCAG	2 cut(s)	160, 409
BspFNI	CGCG	2 cut(s)	51, 59
BspHI	TCATGA	1 cut(s)	91
BspTNI	GGTCTC	2 cut(s)	71, 96
BsrDI	GCAATG	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	334
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	57
BssHII	GCGCGC	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	323
Bst6I	CTCTTC	2 cut(s)	108, 378
BstBAI	YACGTR	1 cut(s)	523
BstC8I	GCNNGC	2 cut(s)	51, 336
BstDEI	CTNAG	2 cut(s)	147, 417
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	455
BstFNI	CGCG	2 cut(s)	51, 59
BstHHI	GCGC	2 cut(s)	51, 53
BstMAI	GTCTC	4 cut(s)	27, 33, 71, 96
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 130
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	2 cut(s)	281, 415
BstSCI	CCNGG	1 cut(s)	472
BstUI	CGCG	2 cut(s)	51, 59
BstV1I	GCAGC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	57
BtrI	CACGTC	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	455
Cac8I	GCNNGC	2 cut(s)	51, 336
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	2 cut(s)	51, 53
Cfr10I	RCCGGY	1 cut(s)	334
Cfr42I	CCGCGG	1 cut(s)	60
CseI	GACGC	1 cut(s)	283
CviAII	CATG	3 cut(s)	92, 278, 412
CviJI	RGCY	6 cut(s)	121, 133, 209, 269, 433, 447
CviKI_1	RGCY	6 cut(s)	121, 133, 209, 269, 433, 447
DdeI	CTNAG	2 cut(s)	147, 417
Eam1104I	CTCTTC	2 cut(s)	108, 378
EarI	CTCTTC	2 cut(s)	108, 378
Eco24I	GRGCYC	2 cut(s)	135, 449
Eco31I	GGTCTC	2 cut(s)	71, 96
EcoRII	CCWGG	1 cut(s)	472
EcoT38I	GRGCYC	2 cut(s)	135, 449
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	3 cut(s)	95, 281, 415
FaiI	YATR	3 cut(s)	93, 279, 413
FatI	CATG	3 cut(s)	91, 277, 411
FauI	CCCGC	2 cut(s)	55, 331
Fnu4HI	GCNGC	4 cut(s)	54, 57, 60, 122
FokI	GGATG	1 cut(s)	442
FriOI	GRGCYC	2 cut(s)	135, 449
Fsp4HI	GCNGC	4 cut(s)	54, 57, 60, 122
FspBI	CTAG	2 cut(s)	303, 532
GlaI	GCGC	2 cut(s)	50, 52
GluI	GCNGC	4 cut(s)	54, 57, 60, 122
GsuI	CTGGAG	1 cut(s)	216
HapII	CCGG	1 cut(s)	335
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	2 cut(s)	51, 53
Hin1II	CATG	3 cut(s)	95, 281, 415
Hin6I	GCGC	2 cut(s)	49, 51
HinP1I	GCGC	2 cut(s)	49, 51
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	3 cut(s)	22, 329, 419
HpaI	GTTAAC	1 cut(s)	319
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	2 cut(s)	295, 441
Hpy166II	GTNNAC	2 cut(s)	319, 404
Hpy188I	TCNGA	4 cut(s)	27, 273, 328, 418
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	2 cut(s)	319, 404
Hpy99I	CGWCG	3 cut(s)	47, 162, 217
HpyAV	CCTTC	2 cut(s)	383, 462
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	2 cut(s)	160, 522
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 130
HpyF3I	CTNAG	2 cut(s)	147, 417
HpySE526I	ACGT	2 cut(s)	160, 522
Hsp92II	CATG	3 cut(s)	95, 281, 415
HspAI	GCGC	2 cut(s)	49, 51
KroI	GCCGGC	1 cut(s)	334
KroNI	GCCGGC	1 cut(s)	336
KspAI	GTTAAC	1 cut(s)	319
KspI	CCGCGG	1 cut(s)	60
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	8 cut(s)	149, 153, 180, 273, 348, 428, 459, 486
Lsp1109I	GCAGC	1 cut(s)	108
MaeI	CTAG	2 cut(s)	303, 532
MaeII	ACGT	2 cut(s)	160, 522
MaeIII	GTNAC	1 cut(s)	283
MboII	GAAGA	2 cut(s)	125, 395
MhlI	GDGCHC	2 cut(s)	135, 449
MluCI	AATT	2 cut(s)	513, 525
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	2 cut(s)	213, 343
MnlI	CCTC	7 cut(s)	191, 237, 286, 379, 386, 469, 472
MreI	CGCCGGCG	1 cut(s)	334
MroNI	GCCGGC	1 cut(s)	334
MseI	TTAA	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	2 cut(s)	51, 59
MwoI	GCNNNNNNNGC	2 cut(s)	59, 130
NaeI	GCCGGC	1 cut(s)	336
NgoMIV	GCCGGC	1 cut(s)	334
NlaIII	CATG	3 cut(s)	95, 281, 415
NmuCI	GTSAC	1 cut(s)	283
NspI	RCATGY	2 cut(s)	281, 415
PagI	TCATGA	1 cut(s)	91
PauI	GCGCGC	1 cut(s)	49
PciI	ACATGT	1 cut(s)	411
PdiI	GCCGGC	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	22, 329
PkrI	GCNGC	4 cut(s)	55, 58, 61, 123
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
Ppu21I	YACGTR	1 cut(s)	523
PscI	ACATGT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PteI	GCGCGC	1 cut(s)	49
SacII	CCGCGG	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	4 cut(s)	54, 57, 60, 122
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	2 cut(s)	135, 449
SetI	ASST	9 cut(s)	18, 108, 163, 211, 308, 397, 454, 478, 525
Sfr303I	CCGCGG	1 cut(s)	60
SgrAI	CRCCGGYG	1 cut(s)	334
SgrBI	CCGCGG	1 cut(s)	60
Sse9I	AATT	2 cut(s)	513, 525
SsiI	CCGC	7 cut(s)	54, 57, 59, 62, 229, 338, 354
SspI	AATATT	1 cut(s)	204
SspMI	CTAG	2 cut(s)	303, 532
StyD4I	CCNGG	1 cut(s)	472
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	2 cut(s)	163, 525
TaqI	TCGA	1 cut(s)	111
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	2 cut(s)	513, 525
TauI	GCSGC	3 cut(s)	56, 59, 62
TfiI	GAWTC	2 cut(s)	22, 329
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	1 cut(s)	121
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	108, 444
XceI	RCATGY	2 cut(s)	281, 415
XspI	CTAG	2 cut(s)	303, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.