Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011515

Physical Location & Seq

Genomic Coordinates Reverse (-)

31930250 .. 31931877

Gene Structure 1628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG281500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGTGTTTTCTAAAGGTGGCGAATCCGAGCAGAGACAGAGACGACGAGCGCGCCGCCGCGGCGGGGCAAGGAAATGAGACCGAGCAAACTCGTGAACAGAGAGACCTTATCGAAGAGTGGCTGCTATTTGAGCCCCTGCTTTTTTCTCAGCAACAACGACGTGGCGGTGGTGGTAGTAGTGGTGGTGGTGGTGGTGCTGGAGGAATATTAGCTTCGTCGTCAATGCTGTTGCGGTTGGATAGGGAGAGGGAGATGTCGGCAATGGTTTTGGCTCTGACGCATGTGGTGACAGGAGAGGAGCAGACTAGAATTGATGTGGTTAACGGTTCGGATTCGCCGGCGGGGAATGGTTTGTGCGGTGGCGTTGGAAGTAAGAGAGAAAGAGAAGAGGAAGGAGGTGGTGGTGGACAGAACATGTCTGAGTCGGTTTCAAGGCTTTGCAGAACATTTGGTGATTTTCCACAACAGGGCTCACCTTCATCCTCCTCTGTCTTTCCAGAGAACTCGATCACAAGAACTCGAAGGACAACTAGCACCACACCACCTGTACAAACAGCATATGAATATAGTGCACCTCAATTATCAGAACAACCAATAAGGAGAAAATACAGAGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCGGCTGAGATCAGAGACCCGTTTAAGGCTGCCAGAGTCTGGCTAGGCACATTCGACACAGCAGAAGCCGCCGCGCAAGCCTACGACACAGCCGCCCTGCGCTTCCGAGGCAACAAGGCAAAACTCAACTTTCCGGAAAACGTCAGACTCCGATCACTACCATCATCAGCTGCAGAAAATCCAATGACGACGCAACCTACAGTTTCGGGTTCTTCGAATGCCCTCCTGTCTATTCCTACATCCACCGAACCTATTGTTCACTCCCAAGCCGCTGCTTCATTCCAACAACAACGGCCTATGAGTCTTTATGATCAGATGGTTTTGTTACCTTCGTCTTCATCTCCATCAGCTACTTCTTCTTCTACACTCGCCTCCTCTGTTTCCTCTGCTTCTTCTTCGCCTCCACCGCCTGCCTTTTCCTCACTTTTTAGTGCTCAGGCAACGTTACCGGTTCAGCTCAGACAAGATACCGGTGATCAGAGTGGCGGAGCTGATTTTTCAGTGCAGCAGCAATGGTCAACGAGCTCGGGTCATTACAGTACTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0033993 GO:0034284 GO:0042221 GO:0043207 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

396

Amino Acids

42.31

Weight (kDa)

6.38

Isoelectric Point (pI)

66.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	202 - 251	1.2e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23350
malus_domestica	MD01G1016100.v1.1 MD15G1334900.v1.1
prunus_persica	Prupe.6G165700_v2.0.a1
pyrus_communis	pycom01g04730 pycom15g29040
rosa_chinensis	RchiOBHm_Chr2g0118211 RchiOBHm_Chr2g0118251
rosa_laevigata	RLG00000018404
rosa_multiflora	Rmu_sc0001925.1_g000007
rosa_roxburghii	Rroxscaffold_2G00125050 Rroxscaffold_2G00125730
rosa_rugosa	Rorug02G0217300.1
rosa_samantha	Rh2AG273500 Rh2BG285700 Rh2DG281500 Rh2DG299500 Rh2DG299600 Rh2DG299700
rosa_wichuraiana	Rw2G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	681
AccII	CGCG	3 cut(s)	51, 59, 716
AccIII	TCCGGA	1 cut(s)	775
AclI	AACGTT	1 cut(s)	1085
AfaI	GTAC	2 cut(s)	549, 1183
AfiI	CCNNNNNNNGG	4 cut(s)	63, 467, 667, 681
AflIII	ACRYGT	1 cut(s)	414
AgeI	ACCGGT	2 cut(s)	1090, 1112
AgsI	TTSAA	1 cut(s)	432
AjiI	CACGTC	1 cut(s)	161
AluBI	AGCT	6 cut(s)	212, 812, 992, 1099, 1133, 1167
AluI	AGCT	6 cut(s)	212, 812, 992, 1099, 1133, 1167
Alw21I	GWGCWC	3 cut(s)	574, 1078, 1169
Alw26I	GTCTC	5 cut(s)	27, 33, 71, 96, 651
Alw44I	GTGCAC	1 cut(s)	570
AlwNI	CAGNNNCTG	1 cut(s)	681
Ama87I	CYCGRG	1 cut(s)	1168
Aor13HI	TCCGGA	1 cut(s)	775
AoxI	GGCC	2 cut(s)	626, 935
ApaLI	GTGCAC	1 cut(s)	570
ApeKI	GCWGC	6 cut(s)	121, 671, 812, 914, 1147, 1150
AsiGI	ACCGGT	2 cut(s)	1090, 1112
AspLEI	GCGC	4 cut(s)	51, 53, 718, 744
AsuHPI	GGTGA	4 cut(s)	298, 464, 465, 1127
AsuII	TTCGAA	1 cut(s)	857
AvaI	CYCGRG	1 cut(s)	1168
BaeGI	GKGCMC	1 cut(s)	574
BanII	GRGCYC	3 cut(s)	135, 473, 1169
BauI	CACGAG	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	969
Bbv12I	GWGCWC	3 cut(s)	574, 1078, 1169
BbvI	GCAGC	6 cut(s)	108, 658, 799, 901, 1159, 1162
BccI	CCATC	3 cut(s)	811, 952, 994
BceAI	ACGGC	1 cut(s)	950
BclI	TGATCA	2 cut(s)	952, 1117
BcoDI	GTCTC	5 cut(s)	27, 33, 71, 96, 651
BfaI	CTAG	4 cut(s)	306, 531, 686, 1189
BfmI	CTRYAG	2 cut(s)	813, 840
BglI	GCCNNNNNGGC	1 cut(s)	59
BmcAI	AGTACT	1 cut(s)	1183
BmeT110I	CYCGRG	1 cut(s)	1168
BmgBI	CACGTC	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	969
BpmI	CTGGAG	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	1077
Bpu14I	TTCGAA	1 cut(s)	857
BsaI	GGTCTC	3 cut(s)	71, 96, 651
BsaJI	CCNNGG	3 cut(s)	57, 629, 748
BsaWI	WCCGGW	3 cut(s)	775, 1090, 1112
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 467, 667, 681
Bse118I	RCCGGY	3 cut(s)	337, 1090, 1112
Bse3DI	GCAATG	2 cut(s)	267, 1160
BseAI	TCCGGA	1 cut(s)	775
BseDI	CCNNGG	3 cut(s)	57, 629, 748
BseGI	GGATG	2 cut(s)	479, 881
BseLI	CCNNNNNNNGG	4 cut(s)	63, 467, 667, 681
BseMI	GCAATG	2 cut(s)	267, 1160
BseMII	CTCAG	5 cut(s)	161, 411, 639, 1091, 1114
BsePI	GCGCGC	1 cut(s)	49
BseRI	GAGGAG	4 cut(s)	311, 475, 627, 1006
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	6 cut(s)	108, 658, 799, 901, 1159, 1162
BsgI	GTGCAG	1 cut(s)	1166
Bsh1236I	CGCG	3 cut(s)	51, 59, 716
BshFI	GGCC	2 cut(s)	628, 937
BshTI	ACCGGT	2 cut(s)	1090, 1112
BsiHKAI	GWGCWC	3 cut(s)	574, 1078, 1169
BsiHKCI	CYCGRG	1 cut(s)	1168
BsiSI	CCGG	4 cut(s)	338, 776, 1091, 1113
BslI	CCNNNNNNNGG	4 cut(s)	63, 467, 667, 681
BsmAI	GTCTC	5 cut(s)	27, 33, 71, 96, 651
BsmBI	CGTCTC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	865
BsnI	GGCC	2 cut(s)	628, 937
Bso31I	GGTCTC	3 cut(s)	71, 96, 651
BsoBI	CYCGRG	1 cut(s)	1168
Bsp119I	TTCGAA	1 cut(s)	857
Bsp1286I	GDGCHC	5 cut(s)	135, 473, 574, 1078, 1169
Bsp13I	TCCGGA	1 cut(s)	775
Bsp1407I	TGTACA	1 cut(s)	547
Bsp143I	GATC	5 cut(s)	507, 651, 794, 952, 1117
Bsp19I	CCATGG	1 cut(s)	629
BspANI	GGCC	2 cut(s)	628, 937
BspCNI	CTCAG	5 cut(s)	160, 412, 640, 1090, 1113
BspEI	TCCGGA	1 cut(s)	775
BspFNI	CGCG	3 cut(s)	51, 59, 716
BspMAI	CTGCAG	1 cut(s)	817
BspT104I	TTCGAA	1 cut(s)	857
BspTNI	GGTCTC	3 cut(s)	71, 96, 651
BsrDI	GCAATG	2 cut(s)	267, 1160
BsrFI	RCCGGY	3 cut(s)	337, 1090, 1112
BsrGI	TGTACA	1 cut(s)	547
BssAI	RCCGGY	3 cut(s)	337, 1090, 1112
BssECI	CCNNGG	3 cut(s)	57, 629, 748
BssHII	GCGCGC	1 cut(s)	49
BssMI	GATC	5 cut(s)	507, 651, 794, 952, 1117
BssSI	CACGAG	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	629
Bst2BI	CACGAG	1 cut(s)	90
Bst4CI	ACNGT	3 cut(s)	326, 844, 1181
Bst6I	CTCTTC	2 cut(s)	108, 381
BstAUI	TGTACA	1 cut(s)	547
BstBI	TTCGAA	1 cut(s)	857
BstC8I	GCNNGC	4 cut(s)	51, 339, 720, 1053
BstDEI	CTNAG	5 cut(s)	147, 420, 648, 1077, 1100
BstDSI	CCRYGG	2 cut(s)	57, 629
BstF5I	GGATG	2 cut(s)	479, 881
BstFNI	CGCG	3 cut(s)	51, 59, 716
BstHHI	GCGC	4 cut(s)	51, 53, 718, 744
BstKTI	GATC	5 cut(s)	510, 654, 797, 955, 1120
BstMAI	GTCTC	5 cut(s)	27, 33, 71, 96, 651
BstMBI	GATC	5 cut(s)	507, 651, 794, 952, 1117
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 130, 710, 719, 750, 1048
BstNSI	RCATGY	2 cut(s)	284, 418
BstSFI	CTRYAG	2 cut(s)	813, 840
BstSLI	GKGCMC	1 cut(s)	574
BstUI	CGCG	3 cut(s)	51, 59, 716
BstV1I	GCAGC	6 cut(s)	108, 658, 799, 901, 1159, 1162
BstV2I	GAAGAC	1 cut(s)	969
BsuRI	GGCC	2 cut(s)	628, 937
BtgI	CCRYGG	2 cut(s)	57, 629
BtrI	CACGTC	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	479, 881
BtsIMutI	CAGTG	1 cut(s)	1149
Cac8I	GCNNGC	4 cut(s)	51, 339, 720, 1053
CaiI	CAGNNNCTG	1 cut(s)	681
CfoI	GCGC	4 cut(s)	51, 53, 718, 744
Cfr10I	RCCGGY	3 cut(s)	337, 1090, 1112
Cfr42I	CCGCGG	1 cut(s)	60
CseI	GACGC	2 cut(s)	286, 841
Csp6I	GTAC	2 cut(s)	548, 1182
CspAI	ACCGGT	2 cut(s)	1090, 1112
CviAII	CATG	3 cut(s)	281, 415, 630
CviQI	GTAC	2 cut(s)	548, 1182
DdeI	CTNAG	5 cut(s)	147, 420, 648, 1077, 1100
DpnI	GATC	5 cut(s)	509, 653, 796, 954, 1119
DpnII	GATC	5 cut(s)	507, 651, 794, 952, 1117
Eam1104I	CTCTTC	2 cut(s)	108, 381
EarI	CTCTTC	2 cut(s)	108, 381
EciI	GGCGGA	1 cut(s)	1143
Ecl136II	GAGCTC	1 cut(s)	1167
Eco130I	CCWWGG	1 cut(s)	629
Eco24I	GRGCYC	3 cut(s)	135, 473, 1169
Eco31I	GGTCTC	3 cut(s)	71, 96, 651
Eco53kI	GAGCTC	1 cut(s)	1167
Eco88I	CYCGRG	1 cut(s)	1168
EcoICRI	GAGCTC	1 cut(s)	1167
EcoT14I	CCWWGG	1 cut(s)	629
EcoT38I	GRGCYC	3 cut(s)	135, 473, 1169
ErhI	CCWWGG	1 cut(s)	629
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	3 cut(s)	284, 418, 633
FaiI	YATR	8 cut(s)	282, 416, 559, 561, 567, 631, 941, 951
FatI	CATG	3 cut(s)	280, 414, 629
FauI	CCCGC	2 cut(s)	55, 334
FauNDI	CATATG	1 cut(s)	559
FbaI	TGATCA	2 cut(s)	952, 1117
FokI	GGATG	2 cut(s)	466, 868
FriOI	GRGCYC	3 cut(s)	135, 473, 1169
FspBI	CTAG	4 cut(s)	306, 531, 686, 1189
GlaI	GCGC	4 cut(s)	50, 52, 717, 743
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	628, 937
HapII	CCGG	4 cut(s)	338, 776, 1091, 1113
HgaI	GACGC	2 cut(s)	286, 841
HhaI	GCGC	4 cut(s)	51, 53, 718, 744
Hin1II	CATG	3 cut(s)	284, 418, 633
Hin6I	GCGC	4 cut(s)	49, 51, 716, 742
HinP1I	GCGC	4 cut(s)	49, 51, 716, 742
HincII	GTYRAC	2 cut(s)	322, 1161
HindII	GTYRAC	2 cut(s)	322, 1161
HinfI	GANTC	6 cut(s)	22, 332, 422, 678, 789, 943
HpaI	GTTAAC	1 cut(s)	322
HpaII	CCGG	4 cut(s)	338, 776, 1091, 1113
HphI	GGTGA	4 cut(s)	298, 464, 465, 1127
Hpy166II	GTNNAC	6 cut(s)	95, 322, 407, 572, 901, 1161
Hpy188III	TCNNGA	3 cut(s)	92, 497, 776
Hpy8I	GTNNAC	6 cut(s)	95, 322, 407, 572, 901, 1161
Hpy99I	CGWCG	4 cut(s)	47, 162, 220, 835
HpyAV	CCTTC	4 cut(s)	386, 486, 516, 981
HpyCH4III	ACNGT	3 cut(s)	326, 844, 1181
HpyCH4IV	ACGT	3 cut(s)	160, 783, 1085
HpyCH4V	TGCA	4 cut(s)	441, 572, 815, 1147
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 130, 710, 719, 750, 1048
HpyF3I	CTNAG	5 cut(s)	147, 420, 648, 1077, 1100
HpySE526I	ACGT	3 cut(s)	160, 783, 1085
Hsp92II	CATG	3 cut(s)	284, 418, 633
HspAI	GCGC	4 cut(s)	49, 51, 716, 742
Kpn2I	TCCGGA	1 cut(s)	775
KroI	GCCGGC	1 cut(s)	337
KroNI	GCCGGC	1 cut(s)	339
Ksp22I	TGATCA	2 cut(s)	952, 1117
KspAI	GTTAAC	1 cut(s)	322
KspI	CCGCGG	1 cut(s)	60
Kzo9I	GATC	5 cut(s)	507, 651, 794, 952, 1117
LmnI	GCTCC	2 cut(s)	298, 1130
Lsp1109I	GCAGC	6 cut(s)	108, 658, 799, 901, 1159, 1162
MaeI	CTAG	4 cut(s)	306, 531, 686, 1189
MaeII	ACGT	3 cut(s)	160, 783, 1085
MaeIII	GTNAC	3 cut(s)	286, 966, 1086
MalI	GATC	5 cut(s)	509, 653, 796, 954, 1119
MboI	GATC	5 cut(s)	507, 651, 794, 952, 1117
MboII	GAAGA	8 cut(s)	125, 398, 846, 969, 990, 993, 1026, 1029
MhlI	GDGCHC	5 cut(s)	135, 473, 574, 1078, 1169
MluCI	AATT	2 cut(s)	309, 578
MlyI	GAGTC	4 cut(s)	431, 687, 783, 952
MmeI	TCCRAC	3 cut(s)	216, 346, 949
MreI	CGCCGGCG	1 cut(s)	337
MroI	TCCGGA	1 cut(s)	775
MroNI	GCCGGC	1 cut(s)	337
MseI	TTAA	2 cut(s)	321, 666
MspA1I	CMGCKG	3 cut(s)	59, 812, 914
MspI	CCGG	4 cut(s)	338, 776, 1091, 1113
Mva1269I	GAATGC	1 cut(s)	865
MvnI	CGCG	3 cut(s)	51, 59, 716
MwoI	GCNNNNNNNGC	6 cut(s)	59, 130, 710, 719, 750, 1048
NaeI	GCCGGC	1 cut(s)	339
NcoI	CCATGG	1 cut(s)	629
NdeI	CATATG	1 cut(s)	559
NdeII	GATC	5 cut(s)	507, 651, 794, 952, 1117
NgoMIV	GCCGGC	1 cut(s)	337
NlaIII	CATG	3 cut(s)	284, 418, 633
NmuCI	GTSAC	1 cut(s)	286
NspI	RCATGY	2 cut(s)	284, 418
NspV	TTCGAA	1 cut(s)	857
PauI	GCGCGC	1 cut(s)	49
PciI	ACATGT	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	854
PctI	GAATGC	1 cut(s)	865
PdiI	GCCGGC	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	22, 332
PflMI	CCANNNNNTGG	1 cut(s)	681
PinAI	ACCGGT	2 cut(s)	1090, 1112
PleI	GAGTC	4 cut(s)	430, 686, 783, 951
PpsI	GAGTC	4 cut(s)	430, 686, 783, 951
PscI	ACATGT	1 cut(s)	414
Psp124BI	GAGCTC	1 cut(s)	1169
Psp1406I	AACGTT	1 cut(s)	1085
PstI	CTGCAG	1 cut(s)	817
PstNI	CAGNNNCTG	1 cut(s)	681
PteI	GCGCGC	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	812
RsaI	GTAC	2 cut(s)	549, 1183
RsaNI	GTAC	2 cut(s)	548, 1182
SacI	GAGCTC	1 cut(s)	1169
SacII	CCGCGG	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	321, 666
Sau3AI	GATC	5 cut(s)	507, 651, 794, 952, 1117
ScaI	AGTACT	1 cut(s)	1183
SchI	GAGTC	4 cut(s)	431, 687, 783, 952
SduI	GDGCHC	5 cut(s)	135, 473, 574, 1078, 1169
SfcI	CTRYAG	2 cut(s)	813, 840
Sfr303I	CCGCGG	1 cut(s)	60
SfuI	TTCGAA	1 cut(s)	857
SgrAI	CRCCGGYG	1 cut(s)	337
SgrBI	CCGCGG	1 cut(s)	60
Sse9I	AATT	2 cut(s)	309, 578
SspI	AATATT	1 cut(s)	207
SspMI	CTAG	4 cut(s)	306, 531, 686, 1189
SstI	GAGCTC	1 cut(s)	1169
StyI	CCWWGG	1 cut(s)	629
TaaI	ACNGT	3 cut(s)	326, 844, 1181
TaiI	ACGT	3 cut(s)	163, 786, 1088
TaqI	TCGA	5 cut(s)	111, 506, 520, 696, 857
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	2 cut(s)	309, 578
TatI	WGTACW	2 cut(s)	547, 1181
TauI	GCSGC	8 cut(s)	56, 59, 62, 647, 713, 716, 737, 914
TfiI	GAWTC	2 cut(s)	22, 332
Tru1I	TTAA	2 cut(s)	321, 666
Tru9I	TTAA	2 cut(s)	321, 666
TscAI	CASTG	1 cut(s)	1149
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	6 cut(s)	121, 671, 812, 914, 1147, 1150
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	4 cut(s)	468, 576, 909, 969
TspRI	CASTG	1 cut(s)	1149
Van91I	CCANNNNNTGG	1 cut(s)	681
VneI	GTGCAC	1 cut(s)	570
XceI	RCATGY	2 cut(s)	284, 418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	636
XspI	CTAG	4 cut(s)	306, 531, 686, 1189
ZrmI	AGTACT	1 cut(s)	1183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.