Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001925.1

Orthogroup ID

OG0011515

Physical Location & Seq

Genomic Coordinates Reverse (-)

31553 .. 33038

Gene Structure 1486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001925.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ctgcttttttctcagcaacaacgacgtggcggtggtggtagtagtggtggtggtgctggtgctggtgctggaggaatattagcttcgtcgtcaatgctgttgcggttggatagggagagggagatgtcggcaatggtttcggctctgacgcatgtggtgacaggagaggagcagactaggtttgatgtggttaacggttcggattcgccggcggggaatggtttgtgcggtggcgttggaagtaagagagaaagagaagaggaaggaggtggtggtggacagaacatgtctgagtcggtttcaaggcttagcagaacatttgatgattttccacaacagggctctccttcatcctcctctgtttttccagagaactcgatcacaagaactcgaaggactactagcaccacaccacctgtacaaacagcatacgaatatagtgcacctcaattatcagaacaaccaataaggagaaaatacagaggagtgaggcagaggccatggggaaaatgggcggctgagatcagagacccgttcaaggctgccagagtctggctaggaacattcgacacagcagaagccgccgcgcaagcctacgacacagccgccctgcgcttccgaggcaacaaggcaaaactcaattttccggaaaacgtcagactccgatcactaccatcatcagctgcagaaaatccaatgacgacgcaacctacagtttcggcttcttcgaatgccctcctgtctattcctacatccaccgaacctattgttcactaccaagcagctgcttcattccaacaacaacggcctatgagtctttatgatcagatggttttgttatcttcgtcttcatctccatcagctacttcttcttctacactcgcctcctctgtttcctctgcttcttcttcgccaccaccgcctgccttttcctcactttttagtgctcaggcaacgtcaccggttcagctcagacaagctaccggtgatcagagtggcggagctgatttttcagtgcagcagcaatggtcaacgagctccggtcattacagtacttcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0033993 GO:0034284 GO:0042221 GO:0043207 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

353

Amino Acids

37.3

Weight (kDa)

9.33

Isoelectric Point (pI)

70.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23350
malus_domestica	MD01G1016100.v1.1 MD15G1334900.v1.1
prunus_persica	Prupe.6G165700_v2.0.a1
pyrus_communis	pycom01g04730 pycom15g29040
rosa_chinensis	RchiOBHm_Chr2g0118211 RchiOBHm_Chr2g0118251
rosa_laevigata	RLG00000018404
rosa_multiflora	Rmu_sc0001925.1_g000007
rosa_roxburghii	Rroxscaffold_2G00125050 Rroxscaffold_2G00125730
rosa_rugosa	Rorug02G0217300.1
rosa_samantha	Rh2AG273500 Rh2BG285700 Rh2DG281500 Rh2DG299500 Rh2DG299600 Rh2DG299700
rosa_wichuraiana	Rw2G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	552
AccII	CGCG	1 cut(s)	587
AccIII	TCCGGA	1 cut(s)	646
AfaI	GTAC	2 cut(s)	420, 1054
AfiI	CCNNNNNNNGG	3 cut(s)	338, 538, 552
AflIII	ACRYGT	1 cut(s)	285
AgeI	ACCGGT	2 cut(s)	961, 983
AgsI	TTSAA	2 cut(s)	303, 538
AjiI	CACGTC	1 cut(s)	26
AluBI	AGCT	8 cut(s)	83, 683, 785, 863, 970, 980, 1004, 1038
AluI	AGCT	8 cut(s)	83, 683, 785, 863, 970, 980, 1004, 1038
Alw21I	GWGCWC	3 cut(s)	445, 949, 1040
Alw26I	GTCTC	1 cut(s)	522
Alw44I	GTGCAC	1 cut(s)	441
AlwNI	CAGNNNCTG	1 cut(s)	552
Aor13HI	TCCGGA	1 cut(s)	646
AoxI	GGCC	2 cut(s)	497, 806
ApaLI	GTGCAC	1 cut(s)	441
ApeKI	GCWGC	6 cut(s)	542, 683, 782, 785, 1018, 1021
AsiGI	ACCGGT	2 cut(s)	961, 983
AspLEI	GCGC	2 cut(s)	589, 615
AsuHPI	GGTGA	3 cut(s)	169, 951, 998
AsuII	TTCGAA	1 cut(s)	728
BaeGI	GKGCMC	1 cut(s)	445
BanII	GRGCYC	2 cut(s)	344, 1040
BbsI	GAAGAC	1 cut(s)	840
Bbv12I	GWGCWC	3 cut(s)	445, 949, 1040
BbvI	GCAGC	6 cut(s)	529, 670, 772, 794, 1030, 1033
BccI	CCATC	3 cut(s)	682, 823, 865
BceAI	ACGGC	1 cut(s)	821
BcgI	CGANNNNNNTGC	4 cut(s)	120, 154, 422, 456
BclI	TGATCA	2 cut(s)	823, 988
BcoDI	GTCTC	1 cut(s)	522
BfaI	CTAG	4 cut(s)	177, 402, 557, 1060
BfmI	CTRYAG	2 cut(s)	684, 711
BlpI	GCTNAGC	1 cut(s)	308
BmcAI	AGTACT	1 cut(s)	1054
BmgBI	CACGTC	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	840
BpmI	CTGGAG	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	948
Bpu1102I	GCTNAGC	1 cut(s)	308
Bpu14I	TTCGAA	1 cut(s)	728
BsaI	GGTCTC	1 cut(s)	522
BsaJI	CCNNGG	2 cut(s)	500, 619
BsaWI	WCCGGW	4 cut(s)	646, 961, 983, 1040
Bsc4I	CCNNNNNNNGG	3 cut(s)	338, 538, 552
Bse118I	RCCGGY	3 cut(s)	208, 961, 983
Bse3DI	GCAATG	2 cut(s)	138, 1031
BseAI	TCCGGA	1 cut(s)	646
BseDI	CCNNGG	2 cut(s)	500, 619
BseGI	GGATG	2 cut(s)	350, 752
BseLI	CCNNNNNNNGG	3 cut(s)	338, 538, 552
BseMI	GCAATG	2 cut(s)	138, 1031
BseMII	CTCAG	5 cut(s)	26, 282, 510, 962, 985
BseRI	GAGGAG	4 cut(s)	182, 346, 498, 877
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	6 cut(s)	529, 670, 772, 794, 1030, 1033
BsgI	GTGCAG	1 cut(s)	1037
Bsh1236I	CGCG	1 cut(s)	587
BshFI	GGCC	2 cut(s)	499, 808
BshTI	ACCGGT	2 cut(s)	961, 983
BsiHKAI	GWGCWC	3 cut(s)	445, 949, 1040
BsiSI	CCGG	5 cut(s)	209, 647, 962, 984, 1041
BslI	CCNNNNNNNGG	3 cut(s)	338, 538, 552
BsmAI	GTCTC	1 cut(s)	522
BsmI	GAATGC	1 cut(s)	736
BsnI	GGCC	2 cut(s)	499, 808
Bso31I	GGTCTC	1 cut(s)	522
Bsp119I	TTCGAA	1 cut(s)	728
Bsp1286I	GDGCHC	4 cut(s)	344, 445, 949, 1040
Bsp13I	TCCGGA	1 cut(s)	646
Bsp1407I	TGTACA	1 cut(s)	418
Bsp143I	GATC	5 cut(s)	378, 522, 665, 823, 988
Bsp1720I	GCTNAGC	1 cut(s)	308
Bsp19I	CCATGG	1 cut(s)	500
BspANI	GGCC	2 cut(s)	499, 808
BspCNI	CTCAG	5 cut(s)	25, 283, 511, 961, 984
BspEI	TCCGGA	1 cut(s)	646
BspFNI	CGCG	1 cut(s)	587
BspMAI	CTGCAG	1 cut(s)	688
BspT104I	TTCGAA	1 cut(s)	728
BspTNI	GGTCTC	1 cut(s)	522
BsrDI	GCAATG	2 cut(s)	138, 1031
BsrFI	RCCGGY	3 cut(s)	208, 961, 983
BsrGI	TGTACA	1 cut(s)	418
BssAI	RCCGGY	3 cut(s)	208, 961, 983
BssECI	CCNNGG	2 cut(s)	500, 619
BssMI	GATC	5 cut(s)	378, 522, 665, 823, 988
BssT1I	CCWWGG	1 cut(s)	500
Bst4CI	ACNGT	3 cut(s)	197, 715, 1052
Bst6I	CTCTTC	1 cut(s)	252
BstAUI	TGTACA	1 cut(s)	418
BstBI	TTCGAA	1 cut(s)	728
BstC8I	GCNNGC	3 cut(s)	210, 591, 924
BstDEI	CTNAG	6 cut(s)	12, 291, 308, 519, 948, 971
BstDSI	CCRYGG	1 cut(s)	500
BstF5I	GGATG	2 cut(s)	350, 752
BstFNI	CGCG	1 cut(s)	587
BstHHI	GCGC	2 cut(s)	589, 615
BstKTI	GATC	5 cut(s)	381, 525, 668, 826, 991
BstMAI	GTCTC	1 cut(s)	522
BstMBI	GATC	5 cut(s)	378, 522, 665, 823, 988
BstMWI	GCNNNNNNNGC	4 cut(s)	581, 590, 621, 919
BstNSI	RCATGY	2 cut(s)	155, 289
BstSFI	CTRYAG	2 cut(s)	684, 711
BstSLI	GKGCMC	1 cut(s)	445
BstUI	CGCG	1 cut(s)	587
BstV1I	GCAGC	6 cut(s)	529, 670, 772, 794, 1030, 1033
BstV2I	GAAGAC	1 cut(s)	840
BsuRI	GGCC	2 cut(s)	499, 808
BtgI	CCRYGG	1 cut(s)	500
BtrI	CACGTC	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	350, 752
BtsIMutI	CAGTG	1 cut(s)	1020
Cac8I	GCNNGC	3 cut(s)	210, 591, 924
CaiI	CAGNNNCTG	1 cut(s)	552
CfoI	GCGC	2 cut(s)	589, 615
Cfr10I	RCCGGY	3 cut(s)	208, 961, 983
CseI	GACGC	2 cut(s)	157, 712
Csp6I	GTAC	2 cut(s)	419, 1053
CspAI	ACCGGT	2 cut(s)	961, 983
CviAII	CATG	3 cut(s)	152, 286, 501
CviQI	GTAC	2 cut(s)	419, 1053
DdeI	CTNAG	6 cut(s)	12, 291, 308, 519, 948, 971
DpnI	GATC	5 cut(s)	380, 524, 667, 825, 990
DpnII	GATC	5 cut(s)	378, 522, 665, 823, 988
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	1014
Ecl136II	GAGCTC	1 cut(s)	1038
Eco130I	CCWWGG	1 cut(s)	500
Eco24I	GRGCYC	2 cut(s)	344, 1040
Eco31I	GGTCTC	1 cut(s)	522
Eco53kI	GAGCTC	1 cut(s)	1038
EcoICRI	GAGCTC	1 cut(s)	1038
EcoT14I	CCWWGG	1 cut(s)	500
EcoT38I	GRGCYC	2 cut(s)	344, 1040
ErhI	CCWWGG	1 cut(s)	500
FaeI	CATG	3 cut(s)	155, 289, 504
FaiI	YATR	7 cut(s)	153, 287, 430, 438, 502, 812, 822
FatI	CATG	3 cut(s)	151, 285, 500
FauI	CCCGC	1 cut(s)	205
FbaI	TGATCA	2 cut(s)	823, 988
FokI	GGATG	2 cut(s)	337, 739
FriOI	GRGCYC	2 cut(s)	344, 1040
FspBI	CTAG	4 cut(s)	177, 402, 557, 1060
GlaI	GCGC	2 cut(s)	588, 614
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	499, 808
HapII	CCGG	5 cut(s)	209, 647, 962, 984, 1041
HgaI	GACGC	2 cut(s)	157, 712
HhaI	GCGC	2 cut(s)	589, 615
Hin1II	CATG	3 cut(s)	155, 289, 504
Hin6I	GCGC	2 cut(s)	587, 613
HinP1I	GCGC	2 cut(s)	587, 613
HincII	GTYRAC	2 cut(s)	193, 1032
HindII	GTYRAC	2 cut(s)	193, 1032
HinfI	GANTC	5 cut(s)	203, 293, 549, 660, 814
HpaI	GTTAAC	1 cut(s)	193
HpaII	CCGG	5 cut(s)	209, 647, 962, 984, 1041
HphI	GGTGA	3 cut(s)	169, 951, 998
Hpy166II	GTNNAC	5 cut(s)	193, 278, 443, 772, 1032
Hpy188III	TCNNGA	2 cut(s)	368, 647
Hpy8I	GTNNAC	5 cut(s)	193, 278, 443, 772, 1032
Hpy99I	CGWCG	3 cut(s)	27, 91, 706
HpyAV	CCTTC	3 cut(s)	257, 357, 387
HpyCH4III	ACNGT	3 cut(s)	197, 715, 1052
HpyCH4IV	ACGT	3 cut(s)	25, 654, 956
HpyCH4V	TGCA	3 cut(s)	443, 686, 1018
HpyF10VI	GCNNNNNNNGC	4 cut(s)	581, 590, 621, 919
HpyF3I	CTNAG	6 cut(s)	12, 291, 308, 519, 948, 971
HpySE526I	ACGT	3 cut(s)	25, 654, 956
Hsp92II	CATG	3 cut(s)	155, 289, 504
HspAI	GCGC	2 cut(s)	587, 613
Kpn2I	TCCGGA	1 cut(s)	646
KroI	GCCGGC	1 cut(s)	208
KroNI	GCCGGC	1 cut(s)	210
Ksp22I	TGATCA	2 cut(s)	823, 988
KspAI	GTTAAC	1 cut(s)	193
Kzo9I	GATC	5 cut(s)	378, 522, 665, 823, 988
LmnI	GCTCC	3 cut(s)	169, 1001, 1043
Lsp1109I	GCAGC	6 cut(s)	529, 670, 772, 794, 1030, 1033
MaeI	CTAG	4 cut(s)	177, 402, 557, 1060
MaeII	ACGT	3 cut(s)	25, 654, 956
MaeIII	GTNAC	2 cut(s)	157, 957
MalI	GATC	5 cut(s)	380, 524, 667, 825, 990
MboI	GATC	5 cut(s)	378, 522, 665, 823, 988
MboII	GAAGA	8 cut(s)	269, 717, 834, 840, 861, 864, 897, 900
MhlI	GDGCHC	4 cut(s)	344, 445, 949, 1040
MluCI	AATT	2 cut(s)	449, 640
MlyI	GAGTC	4 cut(s)	302, 558, 654, 823
MmeI	TCCRAC	3 cut(s)	87, 217, 820
MreI	CGCCGGCG	1 cut(s)	208
MroI	TCCGGA	1 cut(s)	646
MroNI	GCCGGC	1 cut(s)	208
MseI	TTAA	1 cut(s)	192
MspA1I	CMGCKG	2 cut(s)	683, 785
MspI	CCGG	5 cut(s)	209, 647, 962, 984, 1041
Mva1269I	GAATGC	1 cut(s)	736
MvnI	CGCG	1 cut(s)	587
MwoI	GCNNNNNNNGC	4 cut(s)	581, 590, 621, 919
NaeI	GCCGGC	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	500
NdeII	GATC	5 cut(s)	378, 522, 665, 823, 988
NgoMIV	GCCGGC	1 cut(s)	208
NlaIII	CATG	3 cut(s)	155, 289, 504
NmuCI	GTSAC	2 cut(s)	157, 957
NspI	RCATGY	2 cut(s)	155, 289
NspV	TTCGAA	1 cut(s)	728
PciI	ACATGT	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	725
PctI	GAATGC	1 cut(s)	736
PdiI	GCCGGC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	552
PinAI	ACCGGT	2 cut(s)	961, 983
PleI	GAGTC	4 cut(s)	301, 557, 654, 822
PpsI	GAGTC	4 cut(s)	301, 557, 654, 822
PscI	ACATGT	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	1040
PstI	CTGCAG	1 cut(s)	688
PstNI	CAGNNNCTG	1 cut(s)	552
PvuII	CAGCTG	2 cut(s)	683, 785
RsaI	GTAC	2 cut(s)	420, 1054
RsaNI	GTAC	2 cut(s)	419, 1053
SacI	GAGCTC	1 cut(s)	1040
SaqAI	TTAA	1 cut(s)	192
Sau3AI	GATC	5 cut(s)	378, 522, 665, 823, 988
ScaI	AGTACT	1 cut(s)	1054
SchI	GAGTC	4 cut(s)	302, 558, 654, 823
SduI	GDGCHC	4 cut(s)	344, 445, 949, 1040
SfcI	CTRYAG	2 cut(s)	684, 711
SfuI	TTCGAA	1 cut(s)	728
SgrAI	CRCCGGYG	1 cut(s)	208
Sse9I	AATT	2 cut(s)	449, 640
SspI	AATATT	1 cut(s)	78
SspMI	CTAG	4 cut(s)	177, 402, 557, 1060
SstI	GAGCTC	1 cut(s)	1040
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	3 cut(s)	197, 715, 1052
TaiI	ACGT	3 cut(s)	28, 657, 959
TaqI	TCGA	4 cut(s)	377, 391, 567, 728
TasI	AATT	2 cut(s)	449, 640
TatI	WGTACW	2 cut(s)	418, 1052
TauI	GCSGC	4 cut(s)	518, 584, 587, 608
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	1020
TseFI	GTSAC	2 cut(s)	157, 957
TseI	GCWGC	6 cut(s)	542, 683, 782, 785, 1018, 1021
Tsp45I	GTSAC	2 cut(s)	157, 957
TspDTI	ATGAA	3 cut(s)	339, 780, 840
TspRI	CASTG	1 cut(s)	1020
Van91I	CCANNNNNTGG	1 cut(s)	552
VneI	GTGCAC	1 cut(s)	441
XceI	RCATGY	2 cut(s)	155, 289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	507
XspI	CTAG	4 cut(s)	177, 402, 557, 1060
ZrmI	AGTACT	1 cut(s)	1054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.