Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011515

Physical Location & Seq

Genomic Coordinates Forward (+)

60765767 .. 60767857

Gene Structure 2091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00125730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCTGTTGCGGTTGGATAGGGAGAGGGAGATGTCGGTAATGGTTTCGGCTCTGACGCATGTGGTGAGAGGAGAGGAGCAGACTAGGTTTGATGTGGCTAACGGTTCGGATTCGCCGGCGGGGAATGGTTTGTGCGGTGGCGTTGGGAGTAAGAGAGAAAGAGAAGAGGAAGGAGGTGGTGGTGGACAGAACATGTCTGAGTCGGTTTCAAGGCTTTGCAGAACATTTGGTGATTTTCCACTCCAGGGCTCACCTTCATCCTCCTCTGTTTTTCCAGAAAACTCGATCACAAGAACTCGAAGGACTACTAGCACTACACCACCTATACAAACAGCATATGAATATAGTGCACCTCAATTATCAGAACAACCAATAAGGAGAAAATACAGAGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCGGCTGAGATCAGAGACCCGTTCAAAGCAGCCAGAGTCTGGCTAGGCACATTCGACACAGCAGAAGCAGCCGCGCAAGCCTACGACACAGCCGCCCTGCGCTTCCGAGGCAACAAGGCAAAACTCAACTTTCCGGAAAACGTCAGACTCCGATCACTACCATCATCAGCTGCAGAAAATCCAATGACGACGCAACCTACAGTTTCGGGTTCTTCGAATGCCCTCCTGTCTATTCCTACATCCACCGAACCTATTGTTCACTCCCAAGCAGCTGCTTCATTCCAACAACAACGGCCTATGAGTCTTTATGATCAGATGGTTTTGTTATCTTCGTCTTCATCTCCATCAGCTACTTCTTCTTCTACACTCGCCTCCTCTGTTTCCTCTGCTTCTTCTTCGCCACCACCGCCTGCCTTTTCGTCACTTTTTAGTGCTCAGGCAACGTCACCGGTTCAGCTCAGACAAACTACCGGTGATCAGAGTGGCGGAGCTGATGTTTCAGTGCAGCAGCAATGGTCAACGAGCTCCGGTCATTACAGTACTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0033993 GO:0034284 GO:0042221 GO:0043207 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

322

Amino Acids

34.47

Weight (kDa)

9.22

Isoelectric Point (pI)

66.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	128 - 177	9e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23350
malus_domestica	MD01G1016100.v1.1 MD15G1334900.v1.1
prunus_persica	Prupe.6G165700_v2.0.a1
pyrus_communis	pycom01g04730 pycom15g29040
rosa_chinensis	RchiOBHm_Chr2g0118211 RchiOBHm_Chr2g0118251
rosa_laevigata	RLG00000018404
rosa_multiflora	Rmu_sc0001925.1_g000007
rosa_roxburghii	Rroxscaffold_2G00125050 Rroxscaffold_2G00125730
rosa_rugosa	Rorug02G0217300.1
rosa_samantha	Rh2AG273500 Rh2BG285700 Rh2DG281500 Rh2DG299500 Rh2DG299600 Rh2DG299700
rosa_wichuraiana	Rw2G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	459
AccII	CGCG	1 cut(s)	494
AccIII	TCCGGA	1 cut(s)	553
AciI	CCGC	8 cut(s)	10, 119, 135, 422, 492, 513, 827, 906
AfaI	GTAC	1 cut(s)	961
AfiI	CCNNNNNNNGG	2 cut(s)	245, 459
AflIII	ACRYGT	1 cut(s)	192
AgeI	ACCGGT	2 cut(s)	868, 890
AgsI	TTSAA	2 cut(s)	210, 445
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	6 cut(s)	590, 692, 770, 877, 911, 945
AluI	AGCT	6 cut(s)	590, 692, 770, 877, 911, 945
Alw21I	GWGCWC	3 cut(s)	352, 856, 947
Alw26I	GTCTC	1 cut(s)	429
Alw44I	GTGCAC	1 cut(s)	348
AlwNI	CAGNNNCTG	1 cut(s)	459
Aor13HI	TCCGGA	1 cut(s)	553
AoxI	GGCC	2 cut(s)	404, 713
ApaLI	GTGCAC	1 cut(s)	348
ApeKI	GCWGC	7 cut(s)	449, 488, 590, 689, 692, 925, 928
AsiGI	ACCGGT	2 cut(s)	868, 890
AspLEI	GCGC	2 cut(s)	496, 522
AsuHPI	GGTGA	5 cut(s)	76, 242, 243, 858, 905
AsuII	TTCGAA	1 cut(s)	635
BaeGI	GKGCMC	1 cut(s)	352
BanII	GRGCYC	2 cut(s)	251, 947
BbsI	GAAGAC	1 cut(s)	747
Bbv12I	GWGCWC	3 cut(s)	352, 856, 947
BbvI	GCAGC	7 cut(s)	461, 500, 577, 679, 701, 937, 940
BccI	CCATC	3 cut(s)	589, 730, 772
BceAI	ACGGC	1 cut(s)	728
BciT130I	CCWGG	1 cut(s)	245
BclI	TGATCA	2 cut(s)	730, 895
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	4 cut(s)	84, 309, 464, 967
BfmI	CTRYAG	2 cut(s)	591, 618
BmcAI	AGTACT	1 cut(s)	961
Bme1390I	CCNGG	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	245
BpiI	GAAGAC	1 cut(s)	747
BpmI	CTGGAG	1 cut(s)	227
Bpu10I	CCTNAGC	1 cut(s)	855
Bpu14I	TTCGAA	1 cut(s)	635
BsaI	GGTCTC	1 cut(s)	429
BsaJI	CCNNGG	3 cut(s)	244, 407, 526
BsaWI	WCCGGW	4 cut(s)	553, 868, 890, 947
BsaXI	ACNNNNNCTCC	2 cut(s)	900, 930
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 459
Bse118I	RCCGGY	3 cut(s)	115, 868, 890
Bse3DI	GCAATG	1 cut(s)	938
BseAI	TCCGGA	1 cut(s)	553
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	3 cut(s)	244, 407, 526
BseGI	GGATG	2 cut(s)	257, 659
BseLI	CCNNNNNNNGG	2 cut(s)	245, 459
BseMI	GCAATG	1 cut(s)	938
BseMII	CTCAG	4 cut(s)	189, 417, 869, 892
BseRI	GAGGAG	5 cut(s)	84, 89, 253, 405, 784
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	7 cut(s)	461, 500, 577, 679, 701, 937, 940
BsgI	GTGCAG	1 cut(s)	944
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	2 cut(s)	406, 715
BshTI	ACCGGT	2 cut(s)	868, 890
BsiHKAI	GWGCWC	3 cut(s)	352, 856, 947
BsiSI	CCGG	5 cut(s)	116, 554, 869, 891, 948
BslI	CCNNNNNNNGG	2 cut(s)	245, 459
BsmAI	GTCTC	1 cut(s)	429
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	2 cut(s)	406, 715
Bso31I	GGTCTC	1 cut(s)	429
Bsp119I	TTCGAA	1 cut(s)	635
Bsp1286I	GDGCHC	4 cut(s)	251, 352, 856, 947
Bsp13I	TCCGGA	1 cut(s)	553
Bsp143I	GATC	5 cut(s)	285, 429, 572, 730, 895
Bsp19I	CCATGG	1 cut(s)	407
BspACI	CCGC	8 cut(s)	10, 119, 135, 422, 492, 513, 827, 906
BspANI	GGCC	2 cut(s)	406, 715
BspCNI	CTCAG	4 cut(s)	190, 418, 868, 891
BspEI	TCCGGA	1 cut(s)	553
BspFNI	CGCG	1 cut(s)	494
BspMAI	CTGCAG	1 cut(s)	595
BspT104I	TTCGAA	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	938
BsrFI	RCCGGY	3 cut(s)	115, 868, 890
BssAI	RCCGGY	3 cut(s)	115, 868, 890
BssECI	CCNNGG	3 cut(s)	244, 407, 526
BssMI	GATC	5 cut(s)	285, 429, 572, 730, 895
BssT1I	CCWWGG	1 cut(s)	407
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	3 cut(s)	104, 622, 959
Bst6I	CTCTTC	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	635
BstC8I	GCNNGC	3 cut(s)	117, 498, 831
BstDEI	CTNAG	4 cut(s)	198, 426, 855, 878
BstDSI	CCRYGG	1 cut(s)	407
BstF5I	GGATG	2 cut(s)	257, 659
BstFNI	CGCG	1 cut(s)	494
BstHHI	GCGC	2 cut(s)	496, 522
BstKTI	GATC	5 cut(s)	288, 432, 575, 733, 898
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	5 cut(s)	285, 429, 572, 730, 895
BstMWI	GCNNNNNNNGC	4 cut(s)	488, 497, 528, 826
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	2 cut(s)	62, 196
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	2 cut(s)	591, 618
BstSLI	GKGCMC	1 cut(s)	352
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	7 cut(s)	461, 500, 577, 679, 701, 937, 940
BstV2I	GAAGAC	1 cut(s)	747
BsuRI	GGCC	2 cut(s)	406, 715
BtgI	CCRYGG	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	257, 659
BtsIMutI	CAGTG	1 cut(s)	927
Cac8I	GCNNGC	3 cut(s)	117, 498, 831
CaiI	CAGNNNCTG	1 cut(s)	459
CfoI	GCGC	2 cut(s)	496, 522
Cfr10I	RCCGGY	3 cut(s)	115, 868, 890
CseI	GACGC	2 cut(s)	64, 619
Csp6I	GTAC	1 cut(s)	960
CspAI	ACCGGT	2 cut(s)	868, 890
CviAII	CATG	3 cut(s)	59, 193, 408
CviQI	GTAC	1 cut(s)	960
DdeI	CTNAG	4 cut(s)	198, 426, 855, 878
DpnI	GATC	5 cut(s)	287, 431, 574, 732, 897
DpnII	GATC	5 cut(s)	285, 429, 572, 730, 895
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
EciI	GGCGGA	1 cut(s)	921
Ecl136II	GAGCTC	1 cut(s)	945
Eco130I	CCWWGG	1 cut(s)	407
Eco24I	GRGCYC	2 cut(s)	251, 947
Eco31I	GGTCTC	1 cut(s)	429
Eco53kI	GAGCTC	1 cut(s)	945
EcoICRI	GAGCTC	1 cut(s)	945
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	407
EcoT38I	GRGCYC	2 cut(s)	251, 947
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	3 cut(s)	62, 196, 411
FaiI	YATR	9 cut(s)	60, 194, 326, 337, 339, 345, 409, 719, 729
FatI	CATG	3 cut(s)	58, 192, 407
FauI	CCCGC	1 cut(s)	112
FauNDI	CATATG	1 cut(s)	337
FbaI	TGATCA	2 cut(s)	730, 895
FokI	GGATG	2 cut(s)	244, 646
FriOI	GRGCYC	2 cut(s)	251, 947
FspBI	CTAG	4 cut(s)	84, 309, 464, 967
GlaI	GCGC	2 cut(s)	495, 521
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	406, 715
HapII	CCGG	5 cut(s)	116, 554, 869, 891, 948
HgaI	GACGC	2 cut(s)	64, 619
HhaI	GCGC	2 cut(s)	496, 522
Hin1II	CATG	3 cut(s)	62, 196, 411
Hin6I	GCGC	2 cut(s)	494, 520
HinP1I	GCGC	2 cut(s)	494, 520
HincII	GTYRAC	1 cut(s)	939
HindII	GTYRAC	1 cut(s)	939
HinfI	GANTC	5 cut(s)	110, 200, 456, 567, 721
HpaII	CCGG	5 cut(s)	116, 554, 869, 891, 948
HphI	GGTGA	5 cut(s)	76, 242, 243, 858, 905
Hpy166II	GTNNAC	4 cut(s)	185, 350, 679, 939
Hpy188III	TCNNGA	2 cut(s)	275, 554
Hpy8I	GTNNAC	4 cut(s)	185, 350, 679, 939
Hpy99I	CGWCG	1 cut(s)	613
HpyAV	CCTTC	3 cut(s)	164, 264, 294
HpyCH4III	ACNGT	3 cut(s)	104, 622, 959
HpyCH4IV	ACGT	2 cut(s)	561, 863
HpyCH4V	TGCA	4 cut(s)	219, 350, 593, 925
HpyF10VI	GCNNNNNNNGC	4 cut(s)	488, 497, 528, 826
HpyF3I	CTNAG	4 cut(s)	198, 426, 855, 878
HpySE526I	ACGT	2 cut(s)	561, 863
Hsp92II	CATG	3 cut(s)	62, 196, 411
HspAI	GCGC	2 cut(s)	494, 520
Kpn2I	TCCGGA	1 cut(s)	553
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
Ksp22I	TGATCA	2 cut(s)	730, 895
Kzo9I	GATC	5 cut(s)	285, 429, 572, 730, 895
LmnI	GCTCC	3 cut(s)	76, 908, 950
Lsp1109I	GCAGC	7 cut(s)	461, 500, 577, 679, 701, 937, 940
MaeI	CTAG	4 cut(s)	84, 309, 464, 967
MaeII	ACGT	2 cut(s)	561, 863
MaeIII	GTNAC	2 cut(s)	840, 864
MalI	GATC	5 cut(s)	287, 431, 574, 732, 897
MboI	GATC	5 cut(s)	285, 429, 572, 730, 895
MboII	GAAGA	8 cut(s)	176, 624, 741, 747, 768, 771, 804, 807
MhlI	GDGCHC	4 cut(s)	251, 352, 856, 947
MluCI	AATT	1 cut(s)	356
MlyI	GAGTC	4 cut(s)	209, 465, 561, 730
MmeI	TCCRAC	1 cut(s)	727
MreI	CGCCGGCG	1 cut(s)	115
MroI	TCCGGA	1 cut(s)	553
MroNI	GCCGGC	1 cut(s)	115
MspA1I	CMGCKG	2 cut(s)	590, 692
MspI	CCGG	5 cut(s)	116, 554, 869, 891, 948
MspR9I	CCNGG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	643
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	4 cut(s)	488, 497, 528, 826
NaeI	GCCGGC	1 cut(s)	117
NcoI	CCATGG	1 cut(s)	407
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	5 cut(s)	285, 429, 572, 730, 895
NgoMIV	GCCGGC	1 cut(s)	115
NlaIII	CATG	3 cut(s)	62, 196, 411
NmuCI	GTSAC	2 cut(s)	840, 864
NspI	RCATGY	2 cut(s)	62, 196
NspV	TTCGAA	1 cut(s)	635
PciI	ACATGT	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	632
PctI	GAATGC	1 cut(s)	643
PdiI	GCCGGC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	110
PflMI	CCANNNNNTGG	1 cut(s)	459
PinAI	ACCGGT	2 cut(s)	868, 890
PleI	GAGTC	4 cut(s)	208, 464, 561, 729
PpsI	GAGTC	4 cut(s)	208, 464, 561, 729
PscI	ACATGT	1 cut(s)	192
Psp124BI	GAGCTC	1 cut(s)	947
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PstI	CTGCAG	1 cut(s)	595
PstNI	CAGNNNCTG	1 cut(s)	459
PvuII	CAGCTG	2 cut(s)	590, 692
RsaI	GTAC	1 cut(s)	961
RsaNI	GTAC	1 cut(s)	960
SacI	GAGCTC	1 cut(s)	947
Sau3AI	GATC	5 cut(s)	285, 429, 572, 730, 895
ScaI	AGTACT	1 cut(s)	961
SchI	GAGTC	4 cut(s)	209, 465, 561, 730
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	4 cut(s)	251, 352, 856, 947
SfcI	CTRYAG	2 cut(s)	591, 618
SfuI	TTCGAA	1 cut(s)	635
SgrAI	CRCCGGYG	1 cut(s)	115
Sse9I	AATT	1 cut(s)	356
SsiI	CCGC	8 cut(s)	10, 119, 135, 422, 492, 513, 827, 906
SspMI	CTAG	4 cut(s)	84, 309, 464, 967
SstI	GAGCTC	1 cut(s)	947
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	407
TaaI	ACNGT	3 cut(s)	104, 622, 959
TaiI	ACGT	2 cut(s)	564, 866
TaqI	TCGA	4 cut(s)	284, 298, 474, 635
TasI	AATT	1 cut(s)	356
TatI	WGTACW	1 cut(s)	959
TauI	GCSGC	3 cut(s)	425, 494, 515
TfiI	GAWTC	1 cut(s)	110
TscAI	CASTG	1 cut(s)	927
TseFI	GTSAC	2 cut(s)	840, 864
TseI	GCWGC	7 cut(s)	449, 488, 590, 689, 692, 925, 928
Tsp45I	GTSAC	2 cut(s)	840, 864
TspDTI	ATGAA	4 cut(s)	246, 354, 687, 747
TspRI	CASTG	1 cut(s)	927
Van91I	CCANNNNNTGG	1 cut(s)	459
VneI	GTGCAC	1 cut(s)	348
XceI	RCATGY	2 cut(s)	62, 196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
XspI	CTAG	4 cut(s)	84, 309, 464, 967
ZrmI	AGTACT	1 cut(s)	961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.