Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011515

Physical Location & Seq

Genomic Coordinates Forward (+)

37353978 .. 37355907

Gene Structure 1930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1334900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTGTGTATTAAAGGTGGCGAATTCAAGAGGTAATAACGACCAACGTGCCGCAAGGCGCACCAACATTGAGGAGGGACAAGGAGGACATCATAACATTGGAGAATGGCTCAATGAACCCCCGCTTATTTCACATCAGCAACGACAGCGGGCTGGCGGTGGTGGAAGTGGGATATTAGCGTCCGCCGCATCGTCAATGCTGTTGCAGTTGGATAGGGAGAGAGAGATGTCGGCGATGGTATCGGCCTTGACGCATGTGGTGGCCGGAGATGAAAATGAGGTGGCTGCTGCAGGTGTTAATTCTGATTCAAGGACTAGTTCATGGGGCAGTGTTGGAACTAAAAGAAGAAGAGAAGAAGAGGAAGAAGGCGGTGGCGGCGGTGGTCCGTTGTCCGAGTCGGTTACAAGGCTTTGTAGAGCTTTCGATGAATTTCCAAAGCACATTCTGGGGCCATCCTCTGCTTTTGGGGAAGGCTTAACCACCAGGACAACCACAACAGCAATCCCTCCAACTCCAAGTAATAGATATGTATACAGTGCGCCCGAAATAGCAGAGCCAATAAGGAGAAGATACAGAGGAGTGAGGCAAAGACCGTGGGGGAAATGGGCAGCTGAGATTAGAGACCCCTTCAAGGCTGCCAGGGTGTGGTTAGGCACCTTTGAAACAGCCGAAGCCGCCGCCCAAGCCTACGATCAAGCTGCCCTCCGATTCAGAGGCAACAAGGCCAAACTCAACTTCCCTGAAAACGTCAGACTCCTGTCGTCAACCGCCGTTCCTCCGCCGACCCAGTTGAGCAATTCTGCTCCTCAAAATACCCTTTTGTCCGTTGCCACATCCAGTGAGCCGATTGTTCACTCTCAAGCATTCCATTCGTCGGACGAGGTGCCTTCAACCTCAAGAAATCTTGTTAGCTATTCTGAGTTGGTTGATATGCAGAGGCAACCTATGAGCATTTATTATCAGATGCAGTGGCGGAGCCAGAATTCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0033993 GO:0034284 GO:0042221 GO:0043207 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

331

Amino Acids

36.09

Weight (kDa)

8.57

Isoelectric Point (pI)

59.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	190 - 239	1.2e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23350
malus_domestica	MD01G1016100.v1.1 MD15G1334900.v1.1
prunus_persica	Prupe.6G165700_v2.0.a1
pyrus_communis	pycom01g04730 pycom15g29040
rosa_chinensis	RchiOBHm_Chr2g0118211 RchiOBHm_Chr2g0118251
rosa_laevigata	RLG00000018404
rosa_multiflora	Rmu_sc0001925.1_g000007
rosa_roxburghii	Rroxscaffold_2G00125050 Rroxscaffold_2G00125730
rosa_rugosa	Rorug02G0217300.1
rosa_samantha	Rh2AG273500 Rh2BG285700 Rh2DG281500 Rh2DG299500 Rh2DG299600 Rh2DG299700
rosa_wichuraiana	Rw2G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	281
Acc36I	ACCTGC	1 cut(s)	281
AccB1I	GGYRCC	2 cut(s)	653, 883
AccB7I	CCANNNNNTGG	1 cut(s)	645
AccI	GTMKAC	1 cut(s)	531
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	3 cut(s)	22, 428, 982
AfiI	CCNNNNNNNGG	3 cut(s)	631, 645, 874
AgsI	TTSAA	5 cut(s)	27, 309, 631, 662, 891
AhlI	ACTAGT	1 cut(s)	314
AjnI	CCWGG	2 cut(s)	482, 638
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AluBI	AGCT	4 cut(s)	419, 611, 698, 912
AluI	AGCT	4 cut(s)	419, 611, 698, 912
Alw26I	GTCTC	1 cut(s)	615
AoxI	GGCC	4 cut(s)	243, 261, 449, 723
ApeKI	GCWGC	5 cut(s)	284, 287, 608, 635, 698
ApoI	RAATTY	3 cut(s)	22, 428, 982
AspLEI	GCGC	2 cut(s)	60, 541
AspS9I	GGNCC	2 cut(s)	383, 449
AvaII	GGWCC	1 cut(s)	383
BanI	GGYRCC	2 cut(s)	653, 883
BbvI	GCAGC	5 cut(s)	271, 274, 620, 622, 685
BccI	CCATC	2 cut(s)	229, 460
BceAI	ACGGC	1 cut(s)	755
BcgI	CGANNNNNNTGC	6 cut(s)	29, 63, 680, 714, 852, 886
BciT130I	CCWGG	2 cut(s)	484, 640
BcoDI	GTCTC	1 cut(s)	615
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	484, 640
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	2 cut(s)	383, 449
BmiI	GGNNCC	4 cut(s)	450, 655, 885, 977
BmrFI	CCNGG	2 cut(s)	484, 640
BmrI	ACTGGG	1 cut(s)	781
BmsI	GCATC	2 cut(s)	197, 954
BmuI	ACTGGG	1 cut(s)	781
BoxI	GACNNNNGTC	1 cut(s)	757
BplI	GAGNNNNNCTC	2 cut(s)	93, 125
BpuEI	CTTGAG	2 cut(s)	843, 880
BsaI	GGTCTC	1 cut(s)	615
BsaJI	CCNNGG	2 cut(s)	593, 639
Bsc4I	CCNNNNNNNGG	3 cut(s)	631, 645, 874
Bse1I	ACTGG	2 cut(s)	787, 837
BseBI	CCWGG	2 cut(s)	484, 640
BseDI	CCNNGG	2 cut(s)	593, 639
BseGI	GGATG	2 cut(s)	452, 833
BseLI	CCNNNNNNNGG	3 cut(s)	631, 645, 874
BseMII	CTCAG	2 cut(s)	603, 909
BseNI	ACTGG	2 cut(s)	787, 837
BseRI	GAGGAG	3 cut(s)	86, 591, 795
BseXI	GCAGC	5 cut(s)	271, 274, 620, 622, 685
BshFI	GGCC	4 cut(s)	245, 263, 451, 725
BshNI	GGYRCC	2 cut(s)	653, 883
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	3 cut(s)	631, 645, 874
BsmAI	GTCTC	1 cut(s)	615
BsmFI	GGGAC	1 cut(s)	90
BsmI	GAATGC	1 cut(s)	863
BsnI	GGCC	4 cut(s)	245, 263, 451, 725
Bso31I	GGTCTC	1 cut(s)	615
Bsp143I	GATC	1 cut(s)	691
BspANI	GGCC	4 cut(s)	245, 263, 451, 725
BspCNI	CTCAG	2 cut(s)	604, 910
BspLI	GGNNCC	4 cut(s)	450, 655, 885, 977
BspMAI	CTGCAG	1 cut(s)	292
BspMI	ACCTGC	1 cut(s)	281
BspT107I	GGYRCC	2 cut(s)	653, 883
BspTNI	GGTCTC	1 cut(s)	615
BsrI	ACTGG	2 cut(s)	787, 837
BssECI	CCNNGG	2 cut(s)	593, 639
BssMI	GATC	1 cut(s)	691
BssNAI	GTATAC	1 cut(s)	532
Bst1107I	GTATAC	1 cut(s)	532
Bst2UI	CCWGG	2 cut(s)	484, 640
Bst4CI	ACNGT	2 cut(s)	536, 594
Bst6I	CTCTTC	2 cut(s)	343, 351
BstC8I	GCNNGC	2 cut(s)	150, 154
BstDEI	CTNAG	2 cut(s)	612, 918
BstDSI	CCRYGG	1 cut(s)	593
BstF5I	GGATG	2 cut(s)	452, 833
BstHHI	GCGC	2 cut(s)	60, 541
BstKTI	GATC	1 cut(s)	694
BstMAI	GTCTC	1 cut(s)	615
BstMBI	GATC	1 cut(s)	691
BstMWI	GCNNNNNNNGC	5 cut(s)	145, 185, 375, 674, 683
BstNI	CCWGG	2 cut(s)	484, 640
BstNSI	RCATGY	1 cut(s)	257
BstPAI	GACNNNNGTC	1 cut(s)	757
BstSCI	CCNGG	2 cut(s)	482, 638
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	5 cut(s)	271, 274, 620, 622, 685
BstZ17I	GTATAC	1 cut(s)	532
BsuRI	GGCC	4 cut(s)	245, 263, 451, 725
BtgI	CCRYGG	1 cut(s)	593
BtgZI	GCGATG	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	452, 833
BtsI	GCAGTG	2 cut(s)	334, 974
BtsIMutI	CAGTG	4 cut(s)	334, 541, 844, 974
BveI	ACCTGC	1 cut(s)	281
Cac8I	GCNNGC	2 cut(s)	150, 154
CfoI	GCGC	2 cut(s)	60, 541
Cfr13I	GGNCC	2 cut(s)	383, 449
CseI	GACGC	2 cut(s)	168, 259
CspCI	CAANNNNNGTGG	2 cut(s)	575, 610
CviAII	CATG	2 cut(s)	254, 321
DdeI	CTNAG	2 cut(s)	612, 918
DpnI	GATC	1 cut(s)	693
DpnII	GATC	1 cut(s)	691
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	2 cut(s)	343, 351
EarI	CTCTTC	2 cut(s)	343, 351
EciI	GGCGGA	3 cut(s)	172, 768, 988
Eco31I	GGTCTC	1 cut(s)	615
Eco47I	GGWCC	1 cut(s)	383
EcoRI	GAATTC	2 cut(s)	22, 982
EcoRII	CCWGG	2 cut(s)	482, 638
FaeI	CATG	2 cut(s)	257, 324
FaiI	YATR	7 cut(s)	93, 255, 322, 528, 532, 932, 947
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	2 cut(s)	253, 320
FauI	CCCGC	2 cut(s)	129, 141
FblI	GTMKAC	1 cut(s)	531
FokI	GGATG	2 cut(s)	439, 820
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	2 cut(s)	59, 540
HaeIII	GGCC	4 cut(s)	245, 263, 451, 725
HapII	CCGG	1 cut(s)	264
HgaI	GACGC	2 cut(s)	168, 259
HhaI	GCGC	2 cut(s)	60, 541
Hin1II	CATG	2 cut(s)	257, 324
Hin6I	GCGC	2 cut(s)	58, 539
HinP1I	GCGC	2 cut(s)	58, 539
HincII	GTYRAC	1 cut(s)	765
HindII	GTYRAC	1 cut(s)	765
HinfI	GANTC	4 cut(s)	305, 395, 708, 753
HpaII	CCGG	1 cut(s)	264
Hpy166II	GTNNAC	3 cut(s)	532, 765, 853
Hpy188I	TCNGA	9 cut(s)	304, 394, 707, 713, 752, 877, 919, 963, 988
Hpy188III	TCNNGA	2 cut(s)	27, 897
Hpy8I	GTNNAC	3 cut(s)	532, 765, 853
Hpy99I	CGWCG	1 cut(s)	877
HpyAV	CCTTC	4 cut(s)	359, 464, 637, 897
HpyCH4III	ACNGT	2 cut(s)	536, 594
HpyCH4IV	ACGT	2 cut(s)	46, 747
HpyCH4V	TGCA	4 cut(s)	205, 290, 934, 967
HpyF10VI	GCNNNNNNNGC	5 cut(s)	145, 185, 375, 674, 683
HpyF3I	CTNAG	2 cut(s)	612, 918
HpySE526I	ACGT	2 cut(s)	46, 747
Hsp92II	CATG	2 cut(s)	257, 324
HspAI	GCGC	2 cut(s)	58, 539
Kzo9I	GATC	1 cut(s)	691
LmnI	GCTCC	2 cut(s)	808, 975
Lsp1109I	GCAGC	5 cut(s)	271, 274, 620, 622, 685
LweI	GCATC	2 cut(s)	197, 954
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	2 cut(s)	46, 747
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	1 cut(s)	693
MboI	GATC	1 cut(s)	691
MboII	GAAGA	6 cut(s)	357, 360, 365, 368, 374, 579
MluCI	AATT	5 cut(s)	22, 298, 428, 796, 982
MlyI	GAGTC	2 cut(s)	404, 747
MmeI	TCCRAC	4 cut(s)	189, 313, 533, 855
MseI	TTAA	3 cut(s)	11, 297, 476
MspA1I	CMGCKG	2 cut(s)	148, 611
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	2 cut(s)	484, 640
Mva1269I	GAATGC	1 cut(s)	863
MvaI	CCWGG	2 cut(s)	484, 640
MwoI	GCNNNNNNNGC	5 cut(s)	145, 185, 375, 674, 683
NdeII	GATC	1 cut(s)	691
NlaIII	CATG	2 cut(s)	257, 324
NlaIV	GGNNCC	4 cut(s)	450, 655, 885, 977
NspI	RCATGY	1 cut(s)	257
PaqCI	CACCTGC	1 cut(s)	281
PctI	GAATGC	1 cut(s)	863
PfeI	GAWTC	2 cut(s)	305, 708
PflMI	CCANNNNNTGG	1 cut(s)	645
PleI	GAGTC	2 cut(s)	403, 747
PpsI	GAGTC	2 cut(s)	403, 747
PshAI	GACNNNNGTC	1 cut(s)	757
Psp6I	CCWGG	2 cut(s)	482, 638
PspGI	CCWGG	2 cut(s)	482, 638
PspN4I	GGNNCC	4 cut(s)	450, 655, 885, 977
PspPI	GGNCC	2 cut(s)	383, 449
PstI	CTGCAG	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	611
SaqAI	TTAA	3 cut(s)	11, 297, 476
Sau3AI	GATC	1 cut(s)	691
Sau96I	GGNCC	2 cut(s)	383, 449
SchI	GAGTC	2 cut(s)	404, 747
ScrFI	CCNGG	2 cut(s)	484, 640
SfaNI	GCATC	2 cut(s)	197, 954
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	383
SmlI	CTYRAG	2 cut(s)	858, 895
SmoI	CTYRAG	2 cut(s)	858, 895
SpeI	ACTAGT	1 cut(s)	314
Sse9I	AATT	5 cut(s)	22, 298, 428, 796, 982
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	482, 638
TaaI	ACNGT	2 cut(s)	536, 594
TaiI	ACGT	2 cut(s)	49, 750
TaqI	TCGA	1 cut(s)	423
TasI	AATT	5 cut(s)	22, 298, 428, 796, 982
TauI	GCSGC	5 cut(s)	53, 188, 378, 677, 680
TfiI	GAWTC	2 cut(s)	305, 708
Tru1I	TTAA	3 cut(s)	11, 297, 476
Tru9I	TTAA	3 cut(s)	11, 297, 476
TscAI	CASTG	4 cut(s)	334, 541, 844, 974
TseI	GCWGC	5 cut(s)	284, 287, 608, 635, 698
TspDTI	ATGAA	4 cut(s)	129, 285, 309, 441
TspGWI	ACGGA	2 cut(s)	375, 814
TspRI	CASTG	4 cut(s)	334, 541, 844, 974
Van91I	CCANNNNNTGG	1 cut(s)	645
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	3 cut(s)	22, 428, 982
XceI	RCATGY	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	531
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.