Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0011515

Physical Location & Seq

Genomic Coordinates Reverse (-)

30275685 .. 30278210

Gene Structure 2526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G021770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGTGTTTTCTAAAGGTGGCGAATCCGAGCAGAGACAGAGACGACGACCGCGCCGCCGCGGCGTGGCAAGGAAATGAGACCGAGCAAACTCATGAACAGAGAGACCTTATCGAAGAGTGGCTGCTATTTGAGCCCCTGCTTTTTTCTCAGCAACAACGACGTGGCGGTGGTGGTAGTAGTGGTGGTGGTGGTGGTGCTGGTGGTGCTGGTGGTGCTGGAGGAATATTAGCTTCGTCGTCAATGCTGTTGCGGTTGGATAGGGAGAGGGAGATGTCGGCAATGGTTTCGGCTCTGACGCATGTGGTGACAGGAGAGGAGCAGACTAGGTTTGATGTGGTTAACGGTTCGGATTCGCCGGCGGGGAATGGTTTGTGCGGTGGCGTTGGAAGTAAGAGAGAAAGAGAAGAGGAAGGAGGTGGTGGTGGACAGAACATGTCTGAGTCAGTTTCAAGGCTTAGCAGAACATTTGATGATTTTCCACAACAGGGCTCTCCTTCATCCTCCTCTGTTTTTCCAGAGAACTCGATCACAAGAACTCGAAGGACTACTAGCGCCACACCACCTGTACAAACAGCATATGAATATAGTGCACCTCAATTATCAGAACAACCAATAAGGAGAAAATACAGAGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCGGCTGAGATCAGAGACCCGTTCAAGGCTGCCAGAGTCTGGCTAGGAACATTCGACACAGCAGAAGCCGCCGCGCAAGCCTACGACACAGCCGCCCTGCGCTTCCGAGGCAACAAGGCAAAACTCAATTTTCCGGAAAACGTCAGACTCCGATCACTACCATCATCAGCTGCAGAAAATCCAATGACGACGCAACCTACAGTTTCGGCTTCTTCGAATGCCCTCCTGTCTATTCCTACATCCACCGAACCTATTGTTCACTCCCAAGCAGCTGCTTCATTCCAACAACAACGGCCTATGAGTCTTTATGATCAGATGGTTTTGTTATCTTCGTCTTCATCTCCATCAGCTACTTCTTCTTCTACACTCGCCTCCTCTGTTTCCTCTGCTTCTTCTTCGCCACCACCTCCTGCCTTTTCCTCACTTTTTAGTGCTCAGGCAACGTCACCGGTTCAGCTCAGACAAGCTACCGGTGATCAGAGTGGCGGAGCTGACTTTTCAGTGCAGCAGCAATGGTCAACGAGCTCCGGTCATTACAGTACTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0033993 GO:0034284 GO:0042221 GO:0043207 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

402

Amino Acids

42.73

Weight (kDa)

6.17

Isoelectric Point (pI)

66.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	208 - 257	1.2e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23350
malus_domestica	MD01G1016100.v1.1 MD15G1334900.v1.1
prunus_persica	Prupe.6G165700_v2.0.a1
pyrus_communis	pycom01g04730 pycom15g29040
rosa_chinensis	RchiOBHm_Chr2g0118211 RchiOBHm_Chr2g0118251
rosa_laevigata	RLG00000018404
rosa_multiflora	Rmu_sc0001925.1_g000007
rosa_roxburghii	Rroxscaffold_2G00125050 Rroxscaffold_2G00125730
rosa_rugosa	Rorug02G0217300.1
rosa_samantha	Rh2AG273500 Rh2BG285700 Rh2DG281500 Rh2DG299500 Rh2DG299600 Rh2DG299700
rosa_wichuraiana	Rw2G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	699
AccII	CGCG	3 cut(s)	51, 59, 734
AccIII	TCCGGA	1 cut(s)	793
AfaI	GTAC	2 cut(s)	567, 1201
AfiI	CCNNNNNNNGG	4 cut(s)	63, 485, 685, 699
AflIII	ACRYGT	1 cut(s)	432
AgeI	ACCGGT	2 cut(s)	1108, 1130
AgsI	TTSAA	2 cut(s)	450, 685
AjiI	CACGTC	1 cut(s)	161
AluBI	AGCT	8 cut(s)	230, 830, 932, 1010, 1117, 1127, 1151, 1185
AluI	AGCT	8 cut(s)	230, 830, 932, 1010, 1117, 1127, 1151, 1185
Alw21I	GWGCWC	3 cut(s)	592, 1096, 1187
Alw26I	GTCTC	5 cut(s)	27, 33, 71, 96, 669
Alw44I	GTGCAC	1 cut(s)	588
AlwNI	CAGNNNCTG	1 cut(s)	699
Aor13HI	TCCGGA	1 cut(s)	793
AoxI	GGCC	2 cut(s)	644, 953
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	7 cut(s)	121, 689, 830, 929, 932, 1165, 1168
AsiGI	ACCGGT	2 cut(s)	1108, 1130
AspLEI	GCGC	4 cut(s)	53, 554, 736, 762
AsuHPI	GGTGA	3 cut(s)	316, 1098, 1145
AsuII	TTCGAA	1 cut(s)	875
BaeGI	GKGCMC	1 cut(s)	592
BanII	GRGCYC	3 cut(s)	135, 491, 1187
BbsI	GAAGAC	1 cut(s)	987
Bbv12I	GWGCWC	3 cut(s)	592, 1096, 1187
BbvI	GCAGC	7 cut(s)	108, 676, 817, 919, 941, 1177, 1180
BccI	CCATC	3 cut(s)	829, 970, 1012
BceAI	ACGGC	1 cut(s)	968
BcgI	CGANNNNNNTGC	2 cut(s)	267, 301
BclI	TGATCA	2 cut(s)	970, 1135
BcoDI	GTCTC	5 cut(s)	27, 33, 71, 96, 669
BfaI	CTAG	4 cut(s)	324, 549, 704, 1207
BfmI	CTRYAG	2 cut(s)	831, 858
BfoI	RGCGCY	1 cut(s)	555
BglI	GCCNNNNNGGC	1 cut(s)	59
BlpI	GCTNAGC	1 cut(s)	455
BmcAI	AGTACT	1 cut(s)	1201
BmgBI	CACGTC	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	987
BpmI	CTGGAG	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	1095
Bpu1102I	GCTNAGC	1 cut(s)	455
Bpu14I	TTCGAA	1 cut(s)	875
BsaI	GGTCTC	3 cut(s)	71, 96, 669
BsaJI	CCNNGG	3 cut(s)	57, 647, 766
BsaWI	WCCGGW	4 cut(s)	793, 1108, 1130, 1187
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 485, 685, 699
Bse118I	RCCGGY	3 cut(s)	355, 1108, 1130
Bse3DI	GCAATG	2 cut(s)	285, 1178
BseAI	TCCGGA	1 cut(s)	793
BseDI	CCNNGG	3 cut(s)	57, 647, 766
BseGI	GGATG	2 cut(s)	497, 899
BseLI	CCNNNNNNNGG	4 cut(s)	63, 485, 685, 699
BseMI	GCAATG	2 cut(s)	285, 1178
BseMII	CTCAG	5 cut(s)	161, 429, 657, 1109, 1132
BseRI	GAGGAG	4 cut(s)	329, 493, 645, 1024
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	7 cut(s)	108, 676, 817, 919, 941, 1177, 1180
BsgI	GTGCAG	1 cut(s)	1184
Bsh1236I	CGCG	3 cut(s)	51, 59, 734
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	646, 955
BshTI	ACCGGT	2 cut(s)	1108, 1130
BsiEI	CGRYCG	1 cut(s)	49
BsiHKAI	GWGCWC	3 cut(s)	592, 1096, 1187
BsiSI	CCGG	5 cut(s)	356, 794, 1109, 1131, 1188
BslI	CCNNNNNNNGG	4 cut(s)	63, 485, 685, 699
BsmAI	GTCTC	5 cut(s)	27, 33, 71, 96, 669
BsmBI	CGTCTC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	883
BsnI	GGCC	2 cut(s)	646, 955
Bso31I	GGTCTC	3 cut(s)	71, 96, 669
Bsp119I	TTCGAA	1 cut(s)	875
Bsp1286I	GDGCHC	5 cut(s)	135, 491, 592, 1096, 1187
Bsp13I	TCCGGA	1 cut(s)	793
Bsp1407I	TGTACA	1 cut(s)	565
Bsp143I	GATC	5 cut(s)	525, 669, 812, 970, 1135
Bsp1720I	GCTNAGC	1 cut(s)	455
Bsp19I	CCATGG	1 cut(s)	647
BspANI	GGCC	2 cut(s)	646, 955
BspCNI	CTCAG	5 cut(s)	160, 430, 658, 1108, 1131
BspEI	TCCGGA	1 cut(s)	793
BspFNI	CGCG	3 cut(s)	51, 59, 734
BspHI	TCATGA	1 cut(s)	91
BspMAI	CTGCAG	1 cut(s)	835
BspT104I	TTCGAA	1 cut(s)	875
BspTNI	GGTCTC	3 cut(s)	71, 96, 669
BsrDI	GCAATG	2 cut(s)	285, 1178
BsrFI	RCCGGY	3 cut(s)	355, 1108, 1130
BsrGI	TGTACA	1 cut(s)	565
BssAI	RCCGGY	3 cut(s)	355, 1108, 1130
BssECI	CCNNGG	3 cut(s)	57, 647, 766
BssMI	GATC	5 cut(s)	525, 669, 812, 970, 1135
BssT1I	CCWWGG	1 cut(s)	647
Bst4CI	ACNGT	3 cut(s)	344, 862, 1199
Bst6I	CTCTTC	2 cut(s)	108, 399
BstAUI	TGTACA	1 cut(s)	565
BstBI	TTCGAA	1 cut(s)	875
BstC8I	GCNNGC	2 cut(s)	357, 738
BstDEI	CTNAG	6 cut(s)	147, 438, 455, 666, 1095, 1118
BstDSI	CCRYGG	2 cut(s)	57, 647
BstF5I	GGATG	2 cut(s)	497, 899
BstFNI	CGCG	3 cut(s)	51, 59, 734
BstH2I	RGCGCY	1 cut(s)	555
BstHHI	GCGC	4 cut(s)	53, 554, 736, 762
BstKTI	GATC	5 cut(s)	528, 672, 815, 973, 1138
BstMAI	GTCTC	5 cut(s)	27, 33, 71, 96, 669
BstMBI	GATC	5 cut(s)	525, 669, 812, 970, 1135
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 130, 203, 212, 728, 737, 768
BstNSI	RCATGY	2 cut(s)	302, 436
BstSFI	CTRYAG	2 cut(s)	831, 858
BstSLI	GKGCMC	1 cut(s)	592
BstUI	CGCG	3 cut(s)	51, 59, 734
BstV1I	GCAGC	7 cut(s)	108, 676, 817, 919, 941, 1177, 1180
BstV2I	GAAGAC	1 cut(s)	987
BsuRI	GGCC	2 cut(s)	646, 955
BtgI	CCRYGG	2 cut(s)	57, 647
BtrI	CACGTC	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	497, 899
BtsIMutI	CAGTG	1 cut(s)	1167
Cac8I	GCNNGC	2 cut(s)	357, 738
CaiI	CAGNNNCTG	1 cut(s)	699
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	4 cut(s)	53, 554, 736, 762
Cfr10I	RCCGGY	3 cut(s)	355, 1108, 1130
Cfr42I	CCGCGG	1 cut(s)	60
CseI	GACGC	2 cut(s)	304, 859
Csp6I	GTAC	2 cut(s)	566, 1200
CspAI	ACCGGT	2 cut(s)	1108, 1130
CviAII	CATG	4 cut(s)	92, 299, 433, 648
CviQI	GTAC	2 cut(s)	566, 1200
DdeI	CTNAG	6 cut(s)	147, 438, 455, 666, 1095, 1118
DpnI	GATC	5 cut(s)	527, 671, 814, 972, 1137
DpnII	GATC	5 cut(s)	525, 669, 812, 970, 1135
Eam1104I	CTCTTC	2 cut(s)	108, 399
EarI	CTCTTC	2 cut(s)	108, 399
EciI	GGCGGA	1 cut(s)	1161
Ecl136II	GAGCTC	1 cut(s)	1185
Eco130I	CCWWGG	1 cut(s)	647
Eco24I	GRGCYC	3 cut(s)	135, 491, 1187
Eco31I	GGTCTC	3 cut(s)	71, 96, 669
Eco53kI	GAGCTC	1 cut(s)	1185
EcoICRI	GAGCTC	1 cut(s)	1185
EcoT14I	CCWWGG	1 cut(s)	647
EcoT38I	GRGCYC	3 cut(s)	135, 491, 1187
ErhI	CCWWGG	1 cut(s)	647
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	4 cut(s)	95, 302, 436, 651
FaiI	YATR	9 cut(s)	93, 300, 434, 577, 579, 585, 649, 959, 969
FatI	CATG	4 cut(s)	91, 298, 432, 647
FauI	CCCGC	1 cut(s)	352
FauNDI	CATATG	1 cut(s)	577
FbaI	TGATCA	2 cut(s)	970, 1135
FokI	GGATG	2 cut(s)	484, 886
FriOI	GRGCYC	3 cut(s)	135, 491, 1187
FspBI	CTAG	4 cut(s)	324, 549, 704, 1207
GlaI	GCGC	4 cut(s)	52, 553, 735, 761
GsuI	CTGGAG	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	555
HaeIII	GGCC	2 cut(s)	646, 955
HapII	CCGG	5 cut(s)	356, 794, 1109, 1131, 1188
HgaI	GACGC	2 cut(s)	304, 859
HhaI	GCGC	4 cut(s)	53, 554, 736, 762
Hin1II	CATG	4 cut(s)	95, 302, 436, 651
Hin6I	GCGC	4 cut(s)	51, 552, 734, 760
HinP1I	GCGC	4 cut(s)	51, 552, 734, 760
HincII	GTYRAC	2 cut(s)	340, 1179
HindII	GTYRAC	2 cut(s)	340, 1179
HinfI	GANTC	6 cut(s)	22, 350, 440, 696, 807, 961
HpaI	GTTAAC	1 cut(s)	340
HpaII	CCGG	5 cut(s)	356, 794, 1109, 1131, 1188
HphI	GGTGA	3 cut(s)	316, 1098, 1145
Hpy166II	GTNNAC	5 cut(s)	340, 425, 590, 919, 1179
Hpy188III	TCNNGA	3 cut(s)	92, 515, 794
Hpy8I	GTNNAC	5 cut(s)	340, 425, 590, 919, 1179
Hpy99I	CGWCG	4 cut(s)	47, 162, 238, 853
HpyAV	CCTTC	3 cut(s)	404, 504, 534
HpyCH4III	ACNGT	3 cut(s)	344, 862, 1199
HpyCH4IV	ACGT	3 cut(s)	160, 801, 1103
HpyCH4V	TGCA	3 cut(s)	590, 833, 1165
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 130, 203, 212, 728, 737, 768
HpyF3I	CTNAG	6 cut(s)	147, 438, 455, 666, 1095, 1118
HpySE526I	ACGT	3 cut(s)	160, 801, 1103
Hsp92II	CATG	4 cut(s)	95, 302, 436, 651
HspAI	GCGC	4 cut(s)	51, 552, 734, 760
Kpn2I	TCCGGA	1 cut(s)	793
KroI	GCCGGC	1 cut(s)	355
KroNI	GCCGGC	1 cut(s)	357
Ksp22I	TGATCA	2 cut(s)	970, 1135
KspAI	GTTAAC	1 cut(s)	340
KspI	CCGCGG	1 cut(s)	60
Kzo9I	GATC	5 cut(s)	525, 669, 812, 970, 1135
LmnI	GCTCC	3 cut(s)	316, 1148, 1190
Lsp1109I	GCAGC	7 cut(s)	108, 676, 817, 919, 941, 1177, 1180
MaeI	CTAG	4 cut(s)	324, 549, 704, 1207
MaeII	ACGT	3 cut(s)	160, 801, 1103
MaeIII	GTNAC	2 cut(s)	304, 1104
MalI	GATC	5 cut(s)	527, 671, 814, 972, 1137
MboI	GATC	5 cut(s)	525, 669, 812, 970, 1135
MboII	GAAGA	9 cut(s)	125, 416, 864, 981, 987, 1008, 1011, 1044, 1047
MhlI	GDGCHC	5 cut(s)	135, 491, 592, 1096, 1187
MluCI	AATT	2 cut(s)	596, 787
MlyI	GAGTC	4 cut(s)	449, 705, 801, 970
MmeI	TCCRAC	3 cut(s)	234, 364, 967
MreI	CGCCGGCG	1 cut(s)	355
MroI	TCCGGA	1 cut(s)	793
MroNI	GCCGGC	1 cut(s)	355
MseI	TTAA	1 cut(s)	339
MspA1I	CMGCKG	3 cut(s)	59, 830, 932
MspI	CCGG	5 cut(s)	356, 794, 1109, 1131, 1188
Mva1269I	GAATGC	1 cut(s)	883
MvnI	CGCG	3 cut(s)	51, 59, 734
MwoI	GCNNNNNNNGC	7 cut(s)	59, 130, 203, 212, 728, 737, 768
NaeI	GCCGGC	1 cut(s)	357
NcoI	CCATGG	1 cut(s)	647
NdeI	CATATG	1 cut(s)	577
NdeII	GATC	5 cut(s)	525, 669, 812, 970, 1135
NgoMIV	GCCGGC	1 cut(s)	355
NlaIII	CATG	4 cut(s)	95, 302, 436, 651
NmuCI	GTSAC	2 cut(s)	304, 1104
NspI	RCATGY	2 cut(s)	302, 436
NspV	TTCGAA	1 cut(s)	875
PagI	TCATGA	1 cut(s)	91
PciI	ACATGT	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	1 cut(s)	872
PctI	GAATGC	1 cut(s)	883
PdiI	GCCGGC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	22, 350
PflMI	CCANNNNNTGG	1 cut(s)	699
PinAI	ACCGGT	2 cut(s)	1108, 1130
PleI	GAGTC	4 cut(s)	448, 704, 801, 969
PpsI	GAGTC	4 cut(s)	448, 704, 801, 969
PscI	ACATGT	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	1187
PstI	CTGCAG	1 cut(s)	835
PstNI	CAGNNNCTG	1 cut(s)	699
PvuII	CAGCTG	2 cut(s)	830, 932
RsaI	GTAC	2 cut(s)	567, 1201
RsaNI	GTAC	2 cut(s)	566, 1200
SacI	GAGCTC	1 cut(s)	1187
SacII	CCGCGG	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	339
Sau3AI	GATC	5 cut(s)	525, 669, 812, 970, 1135
ScaI	AGTACT	1 cut(s)	1201
SchI	GAGTC	4 cut(s)	449, 705, 801, 970
SduI	GDGCHC	5 cut(s)	135, 491, 592, 1096, 1187
SfcI	CTRYAG	2 cut(s)	831, 858
Sfr303I	CCGCGG	1 cut(s)	60
SfuI	TTCGAA	1 cut(s)	875
SgrAI	CRCCGGYG	1 cut(s)	355
SgrBI	CCGCGG	1 cut(s)	60
Sse9I	AATT	2 cut(s)	596, 787
SspI	AATATT	1 cut(s)	225
SspMI	CTAG	4 cut(s)	324, 549, 704, 1207
SstI	GAGCTC	1 cut(s)	1187
StyI	CCWWGG	1 cut(s)	647
TaaI	ACNGT	3 cut(s)	344, 862, 1199
TaiI	ACGT	3 cut(s)	163, 804, 1106
TaqI	TCGA	5 cut(s)	111, 524, 538, 714, 875
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	2 cut(s)	596, 787
TatI	WGTACW	2 cut(s)	565, 1199
TauI	GCSGC	7 cut(s)	56, 59, 62, 665, 731, 734, 755
TfiI	GAWTC	2 cut(s)	22, 350
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	1167
TseFI	GTSAC	2 cut(s)	304, 1104
TseI	GCWGC	7 cut(s)	121, 689, 830, 929, 932, 1165, 1168
Tsp45I	GTSAC	2 cut(s)	304, 1104
TspDTI	ATGAA	5 cut(s)	108, 486, 594, 927, 987
TspRI	CASTG	1 cut(s)	1167
Van91I	CCANNNNNTGG	1 cut(s)	699
VneI	GTGCAC	1 cut(s)	588
XceI	RCATGY	2 cut(s)	302, 436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	654
XspI	CTAG	4 cut(s)	324, 549, 704, 1207
ZrmI	AGTACT	1 cut(s)	1201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.