Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011515

Physical Location & Seq

Genomic Coordinates Reverse (-)

35611116 .. 35611820

Gene Structure 705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG299600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAATTCCATAGAGAACTCGATCACAAGAACTCGAAGGACTACTAGCACCACACCACCTGTACAAACAGCATATGAATATAGTGCACCTCAATTATCAGAACAACCAATAAGGAGAAAATACAGAGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCGGCTGAGATCAGAGACCCGTTCAAGGCTGCCAGAGTCTGGCTAGGCACATTCGACACAGCAGAAGCCGCCGCGCAAGCCTACGACACAGCCGCCCTGCGCTTCCGAGGCAACAAGGCAAAACTCAACTTTCCGGAAAACGTCAGACTCCGATCACTACCATCATCAGCTGCAGAAAATCCAATGACGACGCAACCTACAGTTTCGGGTTCTTCGAATGCCCTCCTGTCTATTCCTACATCCACCGAACCTATTGTTCACTCCCAAGCAGCTGCTTCATTCCAACAACAACGGCCTATGAATCTTTATGATCAGATGGTTTTGTTATCTTCGTCTTCATCTCCATCAGCTACTTCTTCTTCTACACTCGCCTCCTCTGTTTCCTCTGCTTCTTCTTCGCCACCACCGCCTGCCTTTTCCTCACTTTTTAGTGCTCAGGCAACGTCACCGGTTCAGCTCAGACAACCTACCGGTGATCAGAGTGGCGGAGCTGATTTTTCAGTGCAGCAGCAATGGTCAACGAGCTCCGGTCATTACAGTACTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0033993 GO:0034284 GO:0042221 GO:0043207 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

234

Amino Acids

25.21

Weight (kDa)

10.05

Isoelectric Point (pI)

63.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	40 - 89	5.4e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23350
malus_domestica	MD01G1016100.v1.1 MD15G1334900.v1.1
prunus_persica	Prupe.6G165700_v2.0.a1
pyrus_communis	pycom01g04730 pycom15g29040
rosa_chinensis	RchiOBHm_Chr2g0118211 RchiOBHm_Chr2g0118251
rosa_laevigata	RLG00000018404
rosa_multiflora	Rmu_sc0001925.1_g000007
rosa_roxburghii	Rroxscaffold_2G00125050 Rroxscaffold_2G00125730
rosa_rugosa	Rorug02G0217300.1
rosa_samantha	Rh2AG273500 Rh2BG285700 Rh2DG281500 Rh2DG299500 Rh2DG299600 Rh2DG299700
rosa_wichuraiana	Rw2G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	195
AccII	CGCG	1 cut(s)	230
AccIII	TCCGGA	1 cut(s)	289
AciI	CCGC	6 cut(s)	158, 225, 228, 249, 563, 642
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	2 cut(s)	63, 697
AfiI	CCNNNNNNNGG	2 cut(s)	181, 195
AgeI	ACCGGT	2 cut(s)	604, 626
AgsI	TTSAA	1 cut(s)	181
AluBI	AGCT	6 cut(s)	326, 428, 506, 613, 647, 681
AluI	AGCT	6 cut(s)	326, 428, 506, 613, 647, 681
Alw21I	GWGCWC	3 cut(s)	88, 592, 683
Alw26I	GTCTC	1 cut(s)	165
Alw44I	GTGCAC	1 cut(s)	84
AlwNI	CAGNNNCTG	1 cut(s)	195
Aor13HI	TCCGGA	1 cut(s)	289
AoxI	GGCC	2 cut(s)	140, 449
ApaLI	GTGCAC	1 cut(s)	84
ApeKI	GCWGC	6 cut(s)	185, 326, 425, 428, 661, 664
ApoI	RAATTY	1 cut(s)	4
AsiGI	ACCGGT	2 cut(s)	604, 626
AspLEI	GCGC	2 cut(s)	232, 258
AsuHPI	GGTGA	2 cut(s)	594, 641
AsuII	TTCGAA	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	683
BbsI	GAAGAC	1 cut(s)	483
Bbv12I	GWGCWC	3 cut(s)	88, 592, 683
BbvI	GCAGC	6 cut(s)	172, 313, 415, 437, 673, 676
BccI	CCATC	3 cut(s)	325, 466, 508
BceAI	ACGGC	1 cut(s)	464
BclI	TGATCA	2 cut(s)	466, 631
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	3 cut(s)	45, 200, 703
BfmI	CTRYAG	2 cut(s)	327, 354
BmcAI	AGTACT	1 cut(s)	697
BpiI	GAAGAC	1 cut(s)	483
Bpu10I	CCTNAGC	1 cut(s)	591
Bpu14I	TTCGAA	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	143, 262
BsaWI	WCCGGW	4 cut(s)	289, 604, 626, 683
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 195
Bse118I	RCCGGY	2 cut(s)	604, 626
Bse3DI	GCAATG	1 cut(s)	674
BseAI	TCCGGA	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	143, 262
BseGI	GGATG	1 cut(s)	395
BseLI	CCNNNNNNNGG	2 cut(s)	181, 195
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	3 cut(s)	153, 605, 628
BseRI	GAGGAG	2 cut(s)	141, 520
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	6 cut(s)	172, 313, 415, 437, 673, 676
BsgI	GTGCAG	1 cut(s)	680
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	2 cut(s)	142, 451
BshTI	ACCGGT	2 cut(s)	604, 626
BsiHKAI	GWGCWC	3 cut(s)	88, 592, 683
BsiSI	CCGG	4 cut(s)	290, 605, 627, 684
BslI	CCNNNNNNNGG	2 cut(s)	181, 195
BsmAI	GTCTC	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	142, 451
Bso31I	GGTCTC	1 cut(s)	165
Bsp119I	TTCGAA	1 cut(s)	371
Bsp1286I	GDGCHC	3 cut(s)	88, 592, 683
Bsp13I	TCCGGA	1 cut(s)	289
Bsp1407I	TGTACA	1 cut(s)	61
Bsp143I	GATC	5 cut(s)	21, 165, 308, 466, 631
Bsp19I	CCATGG	1 cut(s)	143
BspACI	CCGC	6 cut(s)	158, 225, 228, 249, 563, 642
BspANI	GGCC	2 cut(s)	142, 451
BspCNI	CTCAG	3 cut(s)	154, 604, 627
BspEI	TCCGGA	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	230
BspMAI	CTGCAG	1 cut(s)	331
BspT104I	TTCGAA	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	674
BsrFI	RCCGGY	2 cut(s)	604, 626
BsrGI	TGTACA	1 cut(s)	61
BssAI	RCCGGY	2 cut(s)	604, 626
BssECI	CCNNGG	2 cut(s)	143, 262
BssMI	GATC	5 cut(s)	21, 165, 308, 466, 631
BssT1I	CCWWGG	1 cut(s)	143
Bst4CI	ACNGT	2 cut(s)	358, 695
BstAUI	TGTACA	1 cut(s)	61
BstBI	TTCGAA	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	234, 567
BstDEI	CTNAG	3 cut(s)	162, 591, 614
BstDSI	CCRYGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	395
BstFNI	CGCG	1 cut(s)	230
BstHHI	GCGC	2 cut(s)	232, 258
BstKTI	GATC	5 cut(s)	24, 168, 311, 469, 634
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	5 cut(s)	21, 165, 308, 466, 631
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 233, 264, 562
BstSFI	CTRYAG	2 cut(s)	327, 354
BstSLI	GKGCMC	1 cut(s)	88
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	6 cut(s)	172, 313, 415, 437, 673, 676
BstV2I	GAAGAC	1 cut(s)	483
BsuRI	GGCC	2 cut(s)	142, 451
BtgI	CCRYGG	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	395
BtsIMutI	CAGTG	1 cut(s)	663
Cac8I	GCNNGC	2 cut(s)	234, 567
CaiI	CAGNNNCTG	1 cut(s)	195
CfoI	GCGC	2 cut(s)	232, 258
Cfr10I	RCCGGY	2 cut(s)	604, 626
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	2 cut(s)	62, 696
CspAI	ACCGGT	2 cut(s)	604, 626
CviAII	CATG	1 cut(s)	144
CviQI	GTAC	2 cut(s)	62, 696
DdeI	CTNAG	3 cut(s)	162, 591, 614
DpnI	GATC	5 cut(s)	23, 167, 310, 468, 633
DpnII	GATC	5 cut(s)	21, 165, 308, 466, 631
EciI	GGCGGA	1 cut(s)	657
Ecl136II	GAGCTC	1 cut(s)	681
Eco130I	CCWWGG	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	683
Eco31I	GGTCTC	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	681
EcoICRI	GAGCTC	1 cut(s)	681
EcoRI	GAATTC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	683
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	1 cut(s)	147
FaiI	YATR	7 cut(s)	11, 73, 75, 81, 145, 455, 465
FatI	CATG	1 cut(s)	143
FauNDI	CATATG	1 cut(s)	73
FbaI	TGATCA	2 cut(s)	466, 631
FokI	GGATG	1 cut(s)	382
FriOI	GRGCYC	1 cut(s)	683
FspBI	CTAG	3 cut(s)	45, 200, 703
GlaI	GCGC	2 cut(s)	231, 257
HaeIII	GGCC	2 cut(s)	142, 451
HapII	CCGG	4 cut(s)	290, 605, 627, 684
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	2 cut(s)	232, 258
Hin1II	CATG	1 cut(s)	147
Hin6I	GCGC	2 cut(s)	230, 256
HinP1I	GCGC	2 cut(s)	230, 256
HincII	GTYRAC	1 cut(s)	675
HindII	GTYRAC	1 cut(s)	675
HinfI	GANTC	3 cut(s)	192, 303, 457
HpaII	CCGG	4 cut(s)	290, 605, 627, 684
HphI	GGTGA	2 cut(s)	594, 641
Hpy166II	GTNNAC	3 cut(s)	86, 415, 675
Hpy188I	TCNGA	8 cut(s)	100, 170, 263, 302, 308, 471, 617, 636
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	3 cut(s)	86, 415, 675
Hpy99I	CGWCG	1 cut(s)	349
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	2 cut(s)	358, 695
HpyCH4IV	ACGT	2 cut(s)	297, 599
HpyCH4V	TGCA	3 cut(s)	86, 329, 661
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 233, 264, 562
HpyF3I	CTNAG	3 cut(s)	162, 591, 614
HpySE526I	ACGT	2 cut(s)	297, 599
Hsp92II	CATG	1 cut(s)	147
HspAI	GCGC	2 cut(s)	230, 256
Kpn2I	TCCGGA	1 cut(s)	289
Ksp22I	TGATCA	2 cut(s)	466, 631
Kzo9I	GATC	5 cut(s)	21, 165, 308, 466, 631
LmnI	GCTCC	2 cut(s)	644, 686
Lsp1109I	GCAGC	6 cut(s)	172, 313, 415, 437, 673, 676
MaeI	CTAG	3 cut(s)	45, 200, 703
MaeII	ACGT	2 cut(s)	297, 599
MaeIII	GTNAC	1 cut(s)	600
MalI	GATC	5 cut(s)	23, 167, 310, 468, 633
MboI	GATC	5 cut(s)	21, 165, 308, 466, 631
MboII	GAAGA	7 cut(s)	360, 477, 483, 504, 507, 540, 543
MhlI	GDGCHC	3 cut(s)	88, 592, 683
MluCI	AATT	2 cut(s)	4, 92
MlyI	GAGTC	2 cut(s)	201, 297
MmeI	TCCRAC	1 cut(s)	463
MroI	TCCGGA	1 cut(s)	289
MspA1I	CMGCKG	2 cut(s)	326, 428
MspI	CCGG	4 cut(s)	290, 605, 627, 684
Mva1269I	GAATGC	1 cut(s)	379
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	4 cut(s)	224, 233, 264, 562
NcoI	CCATGG	1 cut(s)	143
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	5 cut(s)	21, 165, 308, 466, 631
NlaIII	CATG	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	600
NspV	TTCGAA	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	1 cut(s)	368
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	457
PflMI	CCANNNNNTGG	1 cut(s)	195
PinAI	ACCGGT	2 cut(s)	604, 626
PleI	GAGTC	2 cut(s)	200, 297
PpsI	GAGTC	2 cut(s)	200, 297
Psp124BI	GAGCTC	1 cut(s)	683
PstI	CTGCAG	1 cut(s)	331
PstNI	CAGNNNCTG	1 cut(s)	195
PvuII	CAGCTG	2 cut(s)	326, 428
RsaI	GTAC	2 cut(s)	63, 697
RsaNI	GTAC	2 cut(s)	62, 696
SacI	GAGCTC	1 cut(s)	683
Sau3AI	GATC	5 cut(s)	21, 165, 308, 466, 631
ScaI	AGTACT	1 cut(s)	697
SchI	GAGTC	2 cut(s)	201, 297
SduI	GDGCHC	3 cut(s)	88, 592, 683
SfcI	CTRYAG	2 cut(s)	327, 354
SfuI	TTCGAA	1 cut(s)	371
Sse9I	AATT	2 cut(s)	4, 92
SsiI	CCGC	6 cut(s)	158, 225, 228, 249, 563, 642
SspMI	CTAG	3 cut(s)	45, 200, 703
SstI	GAGCTC	1 cut(s)	683
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	2 cut(s)	358, 695
TaiI	ACGT	2 cut(s)	300, 602
TaqI	TCGA	4 cut(s)	20, 34, 210, 371
TasI	AATT	2 cut(s)	4, 92
TatI	WGTACW	2 cut(s)	61, 695
TauI	GCSGC	4 cut(s)	161, 227, 230, 251
TfiI	GAWTC	1 cut(s)	457
TscAI	CASTG	1 cut(s)	663
TseFI	GTSAC	1 cut(s)	600
TseI	GCWGC	6 cut(s)	185, 326, 425, 428, 661, 664
Tsp45I	GTSAC	1 cut(s)	600
TspDTI	ATGAA	5 cut(s)	17, 90, 423, 470, 483
TspRI	CASTG	1 cut(s)	663
Van91I	CCANNNNNTGG	1 cut(s)	195
VneI	GTGCAC	1 cut(s)	84
XapI	RAATTY	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	150
XspI	CTAG	3 cut(s)	45, 200, 703
ZrmI	AGTACT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.