Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011515

Physical Location & Seq

Genomic Coordinates Reverse (-)

35568731 .. 35570105

Gene Structure 1375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG299500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTCGGCTATGGTTTCGGCTCTGACGCATGTGGTGACAGGAGAGGAGCAGAGTAGGTTTGATGTGGTTAACGGTTCGGATTCGCCGGCGGGGAATGGTTTGTGCGGTGCCGTTGGAAGTAAGAGAGAAAGAGAAGAGGAAGGAGGTGGTGGTGGACAGAACATGTTTGAGTCGGTTTCAAGGCTTTGCAGAACATTTGGTGATTTTCCACAACAGGGCTCACCTTCATCCTCCTCTGTTTTTCCAGAGAACTCGATCACAAGAACTCGAAGGACTACTAGCACCACACCACCTGTACAAACAGCATATGAATATAGTGCACCTCAATTATCAGAACAACCAATAAGGAGAAAATACAGAGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCGGCTGAGATCAGAGACCCGTTCAAGGCTGCCAGAGTCTGGCTAGGCACATTCGACACAGCAGAAGCCGCCGCGCAAGCCTACGACACAGCCGCCCTGCGCTTCCGAGGCAACAAGGCAAAACTCAACTTTCCGGAAAACGTCAGACTCCGATCACTACCATCATCAGCTGCAGAAAATCCAATGACGACGCAACCTACAGTTTCGGGTTCTTCGAATGCCCTCCTGTCTATTCCTACATCCACCGAACCTATTGTTCACTCCCAAGCAGCTGCTTCATTCCAACAACAACGGCCTATGAGTCTTTATGATCAGATGGTTTTGTTATCTTCGTCTTCATCTCCATCAGCTACTTCTTCTTCTACACTCGCCTCCTCTGTTTCCTCTGCTTCTTCTTCGCCACCACCGCCTGCCTTTTCCTCACTTTTTAGTGCTCAGGCAACGTCACCGGTTCAGCTCAGACAAGCTACCGGTGATCAGACTGGCGGAGCTGATTTTTCAGTGCAGCAGCAATGGTCAACGAGCTCCGGTCATTACAGTACTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0033993 GO:0034284 GO:0042221 GO:0043207 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

312

Amino Acids

33.19

Weight (kDa)

8.97

Isoelectric Point (pI)

66.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	118 - 167	8.5e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23350
malus_domestica	MD01G1016100.v1.1 MD15G1334900.v1.1
prunus_persica	Prupe.6G165700_v2.0.a1
pyrus_communis	pycom01g04730 pycom15g29040
rosa_chinensis	RchiOBHm_Chr2g0118211 RchiOBHm_Chr2g0118251
rosa_laevigata	RLG00000018404
rosa_multiflora	Rmu_sc0001925.1_g000007
rosa_roxburghii	Rroxscaffold_2G00125050 Rroxscaffold_2G00125730
rosa_rugosa	Rorug02G0217300.1
rosa_samantha	Rh2AG273500 Rh2BG285700 Rh2DG281500 Rh2DG299500 Rh2DG299600 Rh2DG299700
rosa_wichuraiana	Rw2G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AccB7I	CCANNNNNTGG	1 cut(s)	429
AccII	CGCG	1 cut(s)	464
AccIII	TCCGGA	1 cut(s)	523
AciI	CCGC	8 cut(s)	89, 105, 392, 459, 462, 483, 797, 876
AfaI	GTAC	2 cut(s)	297, 931
AfiI	CCNNNNNNNGG	3 cut(s)	215, 415, 429
AflIII	ACRYGT	1 cut(s)	162
AgeI	ACCGGT	2 cut(s)	838, 860
AgsI	TTSAA	2 cut(s)	180, 415
AluBI	AGCT	7 cut(s)	560, 662, 740, 847, 857, 881, 915
AluI	AGCT	7 cut(s)	560, 662, 740, 847, 857, 881, 915
Alw21I	GWGCWC	3 cut(s)	322, 826, 917
Alw26I	GTCTC	1 cut(s)	399
Alw44I	GTGCAC	1 cut(s)	318
AlwNI	CAGNNNCTG	1 cut(s)	429
Aor13HI	TCCGGA	1 cut(s)	523
AoxI	GGCC	2 cut(s)	374, 683
ApaLI	GTGCAC	1 cut(s)	318
ApeKI	GCWGC	6 cut(s)	419, 560, 659, 662, 895, 898
AsiGI	ACCGGT	2 cut(s)	838, 860
AspLEI	GCGC	2 cut(s)	466, 492
AsuHPI	GGTGA	5 cut(s)	46, 212, 213, 828, 875
AsuII	TTCGAA	1 cut(s)	605
BaeGI	GKGCMC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	2 cut(s)	221, 917
BbsI	GAAGAC	1 cut(s)	717
Bbv12I	GWGCWC	3 cut(s)	322, 826, 917
BbvI	GCAGC	6 cut(s)	406, 547, 649, 671, 907, 910
BccI	CCATC	3 cut(s)	559, 700, 742
BceAI	ACGGC	2 cut(s)	95, 698
BclI	TGATCA	2 cut(s)	700, 865
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	3 cut(s)	279, 434, 937
BfmI	CTRYAG	2 cut(s)	561, 588
BmcAI	AGTACT	1 cut(s)	931
BmiI	GGNNCC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	717
Bpu10I	CCTNAGC	1 cut(s)	825
Bpu14I	TTCGAA	1 cut(s)	605
BsaI	GGTCTC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	377, 496
BsaWI	WCCGGW	4 cut(s)	523, 838, 860, 917
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 415, 429
Bse118I	RCCGGY	3 cut(s)	85, 838, 860
Bse1I	ACTGG	1 cut(s)	877
Bse3DI	GCAATG	1 cut(s)	908
BseAI	TCCGGA	1 cut(s)	523
BseDI	CCNNGG	2 cut(s)	377, 496
BseGI	GGATG	2 cut(s)	227, 629
BseLI	CCNNNNNNNGG	3 cut(s)	215, 415, 429
BseMI	GCAATG	1 cut(s)	908
BseMII	CTCAG	3 cut(s)	387, 839, 862
BseNI	ACTGG	1 cut(s)	877
BseRI	GAGGAG	4 cut(s)	59, 223, 375, 754
BseSI	GKGCMC	1 cut(s)	322
BseXI	GCAGC	6 cut(s)	406, 547, 649, 671, 907, 910
BsgI	GTGCAG	1 cut(s)	914
Bsh1236I	CGCG	1 cut(s)	464
BshFI	GGCC	2 cut(s)	376, 685
BshNI	GGYRCC	1 cut(s)	107
BshTI	ACCGGT	2 cut(s)	838, 860
BsiHKAI	GWGCWC	3 cut(s)	322, 826, 917
BsiSI	CCGG	5 cut(s)	86, 524, 839, 861, 918
BslI	CCNNNNNNNGG	3 cut(s)	215, 415, 429
BsmAI	GTCTC	1 cut(s)	399
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	2 cut(s)	376, 685
Bso31I	GGTCTC	1 cut(s)	399
Bsp119I	TTCGAA	1 cut(s)	605
Bsp1286I	GDGCHC	4 cut(s)	221, 322, 826, 917
Bsp13I	TCCGGA	1 cut(s)	523
Bsp1407I	TGTACA	1 cut(s)	295
Bsp143I	GATC	5 cut(s)	255, 399, 542, 700, 865
Bsp19I	CCATGG	1 cut(s)	377
BspACI	CCGC	8 cut(s)	89, 105, 392, 459, 462, 483, 797, 876
BspANI	GGCC	2 cut(s)	376, 685
BspCNI	CTCAG	3 cut(s)	388, 838, 861
BspEI	TCCGGA	1 cut(s)	523
BspFNI	CGCG	1 cut(s)	464
BspLI	GGNNCC	1 cut(s)	109
BspMAI	CTGCAG	1 cut(s)	565
BspT104I	TTCGAA	1 cut(s)	605
BspT107I	GGYRCC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	908
BsrFI	RCCGGY	3 cut(s)	85, 838, 860
BsrGI	TGTACA	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	877
BssAI	RCCGGY	3 cut(s)	85, 838, 860
BssECI	CCNNGG	2 cut(s)	377, 496
BssMI	GATC	5 cut(s)	255, 399, 542, 700, 865
BssT1I	CCWWGG	1 cut(s)	377
Bst4CI	ACNGT	3 cut(s)	74, 592, 929
Bst6I	CTCTTC	1 cut(s)	129
BstAUI	TGTACA	1 cut(s)	295
BstBI	TTCGAA	1 cut(s)	605
BstC8I	GCNNGC	3 cut(s)	87, 468, 801
BstDEI	CTNAG	3 cut(s)	396, 825, 848
BstDSI	CCRYGG	1 cut(s)	377
BstF5I	GGATG	2 cut(s)	227, 629
BstFNI	CGCG	1 cut(s)	464
BstHHI	GCGC	2 cut(s)	466, 492
BstKTI	GATC	5 cut(s)	258, 402, 545, 703, 868
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	5 cut(s)	255, 399, 542, 700, 865
BstMWI	GCNNNNNNNGC	4 cut(s)	458, 467, 498, 796
BstNSI	RCATGY	2 cut(s)	32, 166
BstSFI	CTRYAG	2 cut(s)	561, 588
BstSLI	GKGCMC	1 cut(s)	322
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	6 cut(s)	406, 547, 649, 671, 907, 910
BstV2I	GAAGAC	1 cut(s)	717
BsuRI	GGCC	2 cut(s)	376, 685
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	227, 629
BtsIMutI	CAGTG	1 cut(s)	897
Cac8I	GCNNGC	3 cut(s)	87, 468, 801
CaiI	CAGNNNCTG	1 cut(s)	429
CfoI	GCGC	2 cut(s)	466, 492
Cfr10I	RCCGGY	3 cut(s)	85, 838, 860
CseI	GACGC	2 cut(s)	34, 589
Csp6I	GTAC	2 cut(s)	296, 930
CspAI	ACCGGT	2 cut(s)	838, 860
CviAII	CATG	3 cut(s)	29, 163, 378
CviQI	GTAC	2 cut(s)	296, 930
DdeI	CTNAG	3 cut(s)	396, 825, 848
DpnI	GATC	5 cut(s)	257, 401, 544, 702, 867
DpnII	GATC	5 cut(s)	255, 399, 542, 700, 865
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	891
Ecl136II	GAGCTC	1 cut(s)	915
Eco130I	CCWWGG	1 cut(s)	377
Eco24I	GRGCYC	2 cut(s)	221, 917
Eco31I	GGTCTC	1 cut(s)	399
Eco53kI	GAGCTC	1 cut(s)	915
EcoICRI	GAGCTC	1 cut(s)	915
EcoT14I	CCWWGG	1 cut(s)	377
EcoT38I	GRGCYC	2 cut(s)	221, 917
ErhI	CCWWGG	1 cut(s)	377
FaeI	CATG	3 cut(s)	32, 166, 381
FaiI	YATR	9 cut(s)	11, 30, 164, 307, 309, 315, 379, 689, 699
FatI	CATG	3 cut(s)	28, 162, 377
FauI	CCCGC	1 cut(s)	82
FauNDI	CATATG	1 cut(s)	307
FbaI	TGATCA	2 cut(s)	700, 865
FokI	GGATG	2 cut(s)	214, 616
FriOI	GRGCYC	2 cut(s)	221, 917
FspBI	CTAG	3 cut(s)	279, 434, 937
GlaI	GCGC	2 cut(s)	465, 491
HaeIII	GGCC	2 cut(s)	376, 685
HapII	CCGG	5 cut(s)	86, 524, 839, 861, 918
HgaI	GACGC	2 cut(s)	34, 589
HhaI	GCGC	2 cut(s)	466, 492
Hin1II	CATG	3 cut(s)	32, 166, 381
Hin6I	GCGC	2 cut(s)	464, 490
HinP1I	GCGC	2 cut(s)	464, 490
HincII	GTYRAC	2 cut(s)	70, 909
HindII	GTYRAC	2 cut(s)	70, 909
HinfI	GANTC	5 cut(s)	80, 170, 426, 537, 691
HpaI	GTTAAC	1 cut(s)	70
HpaII	CCGG	5 cut(s)	86, 524, 839, 861, 918
HphI	GGTGA	5 cut(s)	46, 212, 213, 828, 875
Hpy166II	GTNNAC	5 cut(s)	70, 155, 320, 649, 909
Hpy188III	TCNNGA	2 cut(s)	245, 524
Hpy8I	GTNNAC	5 cut(s)	70, 155, 320, 649, 909
Hpy99I	CGWCG	1 cut(s)	583
HpyAV	CCTTC	3 cut(s)	134, 234, 264
HpyCH4III	ACNGT	3 cut(s)	74, 592, 929
HpyCH4IV	ACGT	2 cut(s)	531, 833
HpyCH4V	TGCA	4 cut(s)	189, 320, 563, 895
HpyF10VI	GCNNNNNNNGC	4 cut(s)	458, 467, 498, 796
HpyF3I	CTNAG	3 cut(s)	396, 825, 848
HpySE526I	ACGT	2 cut(s)	531, 833
Hsp92II	CATG	3 cut(s)	32, 166, 381
HspAI	GCGC	2 cut(s)	464, 490
Kpn2I	TCCGGA	1 cut(s)	523
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
Ksp22I	TGATCA	2 cut(s)	700, 865
KspAI	GTTAAC	1 cut(s)	70
Kzo9I	GATC	5 cut(s)	255, 399, 542, 700, 865
LmnI	GCTCC	3 cut(s)	46, 878, 920
Lsp1109I	GCAGC	6 cut(s)	406, 547, 649, 671, 907, 910
MaeI	CTAG	3 cut(s)	279, 434, 937
MaeII	ACGT	2 cut(s)	531, 833
MaeIII	GTNAC	2 cut(s)	34, 834
MalI	GATC	5 cut(s)	257, 401, 544, 702, 867
MboI	GATC	5 cut(s)	255, 399, 542, 700, 865
MboII	GAAGA	8 cut(s)	146, 594, 711, 717, 738, 741, 774, 777
MhlI	GDGCHC	4 cut(s)	221, 322, 826, 917
MluCI	AATT	1 cut(s)	326
MlyI	GAGTC	4 cut(s)	179, 435, 531, 700
MmeI	TCCRAC	2 cut(s)	94, 697
MreI	CGCCGGCG	1 cut(s)	85
MroI	TCCGGA	1 cut(s)	523
MroNI	GCCGGC	1 cut(s)	85
MseI	TTAA	1 cut(s)	69
MspA1I	CMGCKG	2 cut(s)	560, 662
MspI	CCGG	5 cut(s)	86, 524, 839, 861, 918
Mva1269I	GAATGC	1 cut(s)	613
MvnI	CGCG	1 cut(s)	464
MwoI	GCNNNNNNNGC	4 cut(s)	458, 467, 498, 796
NaeI	GCCGGC	1 cut(s)	87
NcoI	CCATGG	1 cut(s)	377
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	5 cut(s)	255, 399, 542, 700, 865
NgoMIV	GCCGGC	1 cut(s)	85
NlaIII	CATG	3 cut(s)	32, 166, 381
NlaIV	GGNNCC	1 cut(s)	109
NmuCI	GTSAC	2 cut(s)	34, 834
NspI	RCATGY	2 cut(s)	32, 166
NspV	TTCGAA	1 cut(s)	605
PciI	ACATGT	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	1 cut(s)	602
PctI	GAATGC	1 cut(s)	613
PdiI	GCCGGC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	80
PflMI	CCANNNNNTGG	1 cut(s)	429
PinAI	ACCGGT	2 cut(s)	838, 860
PleI	GAGTC	4 cut(s)	178, 434, 531, 699
PpsI	GAGTC	4 cut(s)	178, 434, 531, 699
PscI	ACATGT	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	917
PspN4I	GGNNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	565
PstNI	CAGNNNCTG	1 cut(s)	429
PvuII	CAGCTG	2 cut(s)	560, 662
RsaI	GTAC	2 cut(s)	297, 931
RsaNI	GTAC	2 cut(s)	296, 930
SacI	GAGCTC	1 cut(s)	917
SaqAI	TTAA	1 cut(s)	69
Sau3AI	GATC	5 cut(s)	255, 399, 542, 700, 865
ScaI	AGTACT	1 cut(s)	931
SchI	GAGTC	4 cut(s)	179, 435, 531, 700
SduI	GDGCHC	4 cut(s)	221, 322, 826, 917
SfcI	CTRYAG	2 cut(s)	561, 588
SfuI	TTCGAA	1 cut(s)	605
SgrAI	CRCCGGYG	1 cut(s)	85
Sse9I	AATT	1 cut(s)	326
SsiI	CCGC	8 cut(s)	89, 105, 392, 459, 462, 483, 797, 876
SspMI	CTAG	3 cut(s)	279, 434, 937
SstI	GAGCTC	1 cut(s)	917
StyI	CCWWGG	1 cut(s)	377
TaaI	ACNGT	3 cut(s)	74, 592, 929
TaiI	ACGT	2 cut(s)	534, 836
TaqI	TCGA	4 cut(s)	254, 268, 444, 605
TasI	AATT	1 cut(s)	326
TatI	WGTACW	2 cut(s)	295, 929
TauI	GCSGC	4 cut(s)	395, 461, 464, 485
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	897
TseFI	GTSAC	2 cut(s)	34, 834
TseI	GCWGC	6 cut(s)	419, 560, 659, 662, 895, 898
Tsp45I	GTSAC	2 cut(s)	34, 834
TspDTI	ATGAA	4 cut(s)	216, 324, 657, 717
TspRI	CASTG	1 cut(s)	897
Van91I	CCANNNNNTGG	1 cut(s)	429
VneI	GTGCAC	1 cut(s)	318
XceI	RCATGY	2 cut(s)	32, 166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	384
XspI	CTAG	3 cut(s)	279, 434, 937
ZrmI	AGTACT	1 cut(s)	931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.