Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0011515

Physical Location & Seq

Genomic Coordinates Reverse (-)

3890149 .. 3891705

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g04730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGCGGGCGTGTTCGTTTTCTTGACGAAAGAGAACTTGCATGTAAACAGTACAGAACTTGGTCTTGTATTTTGTGGGTGGGTGGTTGTGTTTATAGTATTAAAGGTGGCGAATTCTAGAGGCAATAACGACCAACATGCCGACGGACAGGGAGGACAGCGCAGTCGCGGTGGTGCTGGAGGTGGGATATTAGTGTCGGCGACATCGTCAATGCTGTTGCAGTTGGATAGGGAGAGAGAGATGTCGGTGATGGTATCGGCCTTGACGCATGTGGTGGCCGGAGATGATGATGAGGTGGCTGCTGCTGCACCTGCATGTGGGAATTCTGATTCAGGGACTAGTTCATGGAGTAGTGTTGGAACTAAGAGAGGAAGAGAAGAAGAGGAAGGCGGCAGCGGCCGTGGCGGCGCTCCCTTGTCCGAGTCGGTTACAAGGCTCTGTAGAGCTTTTGGTGAATTTCCACAGCAGATTCAGCGGCAATCCTCTGCTTTTGGAGAAGGCTCAACCGTACGAACAAGGACAACAGAACCTACACAAACAGCGTTCCCTCCAACTCCAATTAGTACTTATGTTTACAGTGCACCCGAAATAGCAGAGCCAATAAGGAGAAGATACAGAGGAGTGAGACAAAGGCCGTGGGGCAAATGGGCGGCTGAGATTAGAGACCCCTTCAAGGCCGCAAGGGTGTGGCTAGGCACCTTCGAAACAGCCGAAGCCGCCGCCCAAGCCTACGACCAAGCTGCCCTCCGATTCAGAGGCAACAAGGCCAAACTCAACTTCCCAGAAAACGTCAGACTCCTGTTGTCAACCGCTGTTGCTCCGCCGACCCCGTTGACTCCTTCTGCTCCTCAAAATACCCTTTTGTCCGTTGCCACATCCAGTGAGTCGATTGTTCACTCTCATGCATTCCATTCATCGGAAGAGATGGCTTCAACCTCAAGAAATCTTGTTAGCTATTCTATGTTGGCTGATATGCAGAGGCAACCCATGAGCCTTTATGATCAAATAGTTCTGTCATCCTCTGCATCTACAACTGCTGTTGCTACTGCTTCTTCTTCTTCCCCTTCCTTTTCTTCGCCATCACCGCCTCCTTTTTCTTCACTTTCGGTCATCGCTTCCGCTGGACCATCCGTAAGTGACAACAGTACTAGTGCTTCCGATTTTCTGATGCAGCAATGGTCTGGCCCTATTCAGTATACTACTCCATCCTCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0033993 GO:0034284 GO:0042221 GO:0043207 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

406

Amino Acids

42.98

Weight (kDa)

6.34

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	204 - 253	1.7e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23350
malus_domestica	MD01G1016100.v1.1 MD15G1334900.v1.1
prunus_persica	Prupe.6G165700_v2.0.a1
pyrus_communis	pycom01g04730 pycom15g29040
rosa_chinensis	RchiOBHm_Chr2g0118211 RchiOBHm_Chr2g0118251
rosa_laevigata	RLG00000018404
rosa_multiflora	Rmu_sc0001925.1_g000007
rosa_roxburghii	Rroxscaffold_2G00125050 Rroxscaffold_2G00125730
rosa_rugosa	Rorug02G0217300.1
rosa_samantha	Rh2AG273500 Rh2BG285700 Rh2DG281500 Rh2DG299500 Rh2DG299600 Rh2DG299700
rosa_wichuraiana	Rw2G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	319
AasI	GACNNNNNNGTC	1 cut(s)	162
Acc36I	ACCTGC	1 cut(s)	319
AccB1I	GGYRCC	1 cut(s)	695
AccI	GTMKAC	1 cut(s)	1196
AccII	CGCG	1 cut(s)	168
AcoI	YGGCCR	2 cut(s)	276, 397
AcsI	RAATTY	3 cut(s)	112, 322, 455
AfaI	GTAC	4 cut(s)	52, 510, 565, 1147
AfiI	CCNNNNNNNGG	3 cut(s)	317, 673, 916
AgsI	TTSAA	2 cut(s)	673, 933
AhlI	ACTAGT	2 cut(s)	338, 1148
AjuI	GAANNNNNNNTTGG	2 cut(s)	761, 793
AluBI	AGCT	4 cut(s)	446, 740, 954, 1215
AluI	AGCT	4 cut(s)	446, 740, 954, 1215
Alw21I	GWGCWC	1 cut(s)	583
Alw26I	GTCTC	2 cut(s)	619, 657
Alw44I	GTGCAC	1 cut(s)	579
AoxI	GGCC	7 cut(s)	258, 276, 397, 632, 675, 765, 1183
ApaLI	GTGCAC	1 cut(s)	579
ApeKI	GCWGC	6 cut(s)	299, 302, 305, 393, 740, 1171
ApoI	RAATTY	3 cut(s)	112, 322, 455
AspLEI	GCGC	2 cut(s)	162, 410
AspS9I	GGNCC	2 cut(s)	1124, 1184
AsuHPI	GGTGA	3 cut(s)	259, 464, 1074
AsuII	TTCGAA	1 cut(s)	702
AvaII	GGWCC	1 cut(s)	1124
BaeGI	GKGCMC	1 cut(s)	583
BanI	GGYRCC	1 cut(s)	695
BarI	GAAGNNNNNNTAC	2 cut(s)	1138, 1170
Bbv12I	GWGCWC	1 cut(s)	583
BbvI	GCAGC	6 cut(s)	286, 289, 292, 405, 727, 1183
BccI	CCATC	5 cut(s)	244, 919, 1087, 1135, 1213
BceAI	ACGGC	2 cut(s)	384, 619
BcgI	CGANNNNNNTGC	4 cut(s)	119, 153, 722, 756
BclI	TGATCA	1 cut(s)	1000
BcoDI	GTCTC	2 cut(s)	619, 657
BcuI	ACTAGT	2 cut(s)	338, 1148
BfaI	CTAG	4 cut(s)	117, 339, 692, 1149
BfmI	CTRYAG	1 cut(s)	439
BfoI	RGCGCY	1 cut(s)	411
BfuAI	ACCTGC	1 cut(s)	319
BglI	GCCNNNNNGGC	1 cut(s)	405
BmcAI	AGTACT	2 cut(s)	565, 1147
Bme18I	GGWCC	1 cut(s)	1124
BmgT120I	GGNCC	2 cut(s)	1124, 1184
BmiI	GGNNCC	1 cut(s)	697
BmsI	GCATC	2 cut(s)	1034, 1158
BpmI	CTGGAG	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	702
BpuEI	CTTGAG	2 cut(s)	922, 1195
BsaI	GGTCTC	1 cut(s)	657
BsaJI	CCNNGG	2 cut(s)	400, 635
Bsc4I	CCNNNNNNNGG	3 cut(s)	317, 673, 916
Bse1I	ACTGG	1 cut(s)	879
Bse3DI	GCAATG	1 cut(s)	1181
BseDI	CCNNGG	2 cut(s)	400, 635
BseGI	GGATG	4 cut(s)	875, 1016, 1127, 1205
BseLI	CCNNNNNNNGG	3 cut(s)	317, 673, 916
BseMI	GCAATG	1 cut(s)	1181
BseMII	CTCAG	1 cut(s)	645
BseNI	ACTGG	1 cut(s)	879
BseRI	GAGGAG	2 cut(s)	633, 837
BseSI	GKGCMC	1 cut(s)	583
BseX3I	CGGCCG	1 cut(s)	397
BseXI	GCAGC	6 cut(s)	286, 289, 292, 405, 727, 1183
BsgI	GTGCAG	1 cut(s)	291
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	7 cut(s)	260, 278, 399, 634, 677, 767, 1185
BshNI	GGYRCC	1 cut(s)	695
BsiEI	CGRYCG	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	583
BsiSI	CCGG	1 cut(s)	279
BsiWI	CGTACG	1 cut(s)	508
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	3 cut(s)	317, 673, 916
BsmAI	GTCTC	2 cut(s)	619, 657
BsmFI	GGGAC	1 cut(s)	349
BsmI	GAATGC	1 cut(s)	905
BsnI	GGCC	7 cut(s)	260, 278, 399, 634, 677, 767, 1185
Bso31I	GGTCTC	1 cut(s)	657
Bsp119I	TTCGAA	1 cut(s)	702
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	1 cut(s)	1000
BspANI	GGCC	7 cut(s)	260, 278, 399, 634, 677, 767, 1185
BspCNI	CTCAG	1 cut(s)	646
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	697
BspMI	ACCTGC	1 cut(s)	319
BspT104I	TTCGAA	1 cut(s)	702
BspT107I	GGYRCC	1 cut(s)	695
BspTNI	GGTCTC	1 cut(s)	657
BsrDI	GCAATG	1 cut(s)	1181
BsrI	ACTGG	1 cut(s)	879
BssECI	CCNNGG	2 cut(s)	400, 635
BssMI	GATC	1 cut(s)	1000
BssNAI	GTATAC	1 cut(s)	1197
Bst1107I	GTATAC	1 cut(s)	1197
Bst4CI	ACNGT	4 cut(s)	50, 508, 578, 1145
Bst6I	CTCTTC	3 cut(s)	367, 375, 915
BstBI	TTCGAA	1 cut(s)	702
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	363, 654
BstDSI	CCRYGG	2 cut(s)	400, 635
BstF5I	GGATG	4 cut(s)	875, 1016, 1127, 1205
BstFNI	CGCG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	411
BstHHI	GCGC	2 cut(s)	162, 410
BstKTI	GATC	1 cut(s)	1003
BstMAI	GTCTC	2 cut(s)	619, 657
BstMBI	GATC	1 cut(s)	1000
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	9 cut(s)	305, 311, 396, 402, 405, 472, 716, 725, 1084
BstNSI	RCATGY	4 cut(s)	44, 140, 272, 318
BstSFI	CTRYAG	1 cut(s)	439
BstSLI	GKGCMC	1 cut(s)	583
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	6 cut(s)	286, 289, 292, 405, 727, 1183
BstZ17I	GTATAC	1 cut(s)	1197
BstZI	CGGCCG	1 cut(s)	397
BsuRI	GGCC	7 cut(s)	260, 278, 399, 634, 677, 767, 1185
BtgI	CCRYGG	2 cut(s)	400, 635
BtgZI	GCGATG	1 cut(s)	1096
BtsCI	GGATG	4 cut(s)	875, 1016, 1127, 1205
BtsIMutI	CAGTG	2 cut(s)	583, 886
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	2 cut(s)	162, 410
Cfr13I	GGNCC	2 cut(s)	1124, 1184
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	4 cut(s)	51, 509, 564, 1146
CspCI	CAANNNNNGTGG	2 cut(s)	617, 652
CviAII	CATG	7 cut(s)	41, 137, 269, 315, 345, 902, 988
CviQI	GTAC	4 cut(s)	51, 509, 564, 1146
DdeI	CTNAG	2 cut(s)	363, 654
DpnI	GATC	1 cut(s)	1002
DpnII	GATC	1 cut(s)	1000
DrdI	GACNNNNNNGTC	1 cut(s)	162
DseDI	GACNNNNNNGTC	1 cut(s)	162
EaeI	YGGCCR	2 cut(s)	276, 397
EagI	CGGCCG	1 cut(s)	397
Eam1104I	CTCTTC	3 cut(s)	367, 375, 915
EarI	CTCTTC	3 cut(s)	367, 375, 915
EciI	GGCGGA	1 cut(s)	810
EclXI	CGGCCG	1 cut(s)	397
Eco31I	GGTCTC	1 cut(s)	657
Eco47I	GGWCC	1 cut(s)	1124
Eco52I	CGGCCG	1 cut(s)	397
EcoRI	GAATTC	2 cut(s)	112, 322
EcoT22I	ATGCAT	1 cut(s)	907
FaeI	CATG	7 cut(s)	44, 140, 272, 318, 348, 905, 991
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	7 cut(s)	40, 136, 268, 314, 344, 901, 987
FbaI	TGATCA	1 cut(s)	1000
FblI	GTMKAC	1 cut(s)	1196
FokI	GGATG	4 cut(s)	862, 1003, 1114, 1192
FspBI	CTAG	4 cut(s)	117, 339, 692, 1149
GlaI	GCGC	2 cut(s)	161, 409
GsuI	CTGGAG	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	411
HaeIII	GGCC	7 cut(s)	260, 278, 399, 634, 677, 767, 1185
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	2 cut(s)	162, 410
Hin1II	CATG	7 cut(s)	44, 140, 272, 318, 348, 905, 991
Hin6I	GCGC	2 cut(s)	160, 408
HinP1I	GCGC	2 cut(s)	160, 408
HincII	GTYRAC	2 cut(s)	807, 834
HindII	GTYRAC	2 cut(s)	807, 834
HinfI	GANTC	7 cut(s)	329, 422, 469, 750, 795, 835, 884
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	3 cut(s)	259, 464, 1074
Hpy166II	GTNNAC	7 cut(s)	46, 574, 581, 807, 834, 895, 1197
Hpy188I	TCNGA	8 cut(s)	328, 421, 749, 755, 794, 919, 1159, 1167
Hpy188III	TCNNGA	3 cut(s)	22, 117, 939
Hpy8I	GTNNAC	7 cut(s)	46, 574, 581, 807, 834, 895, 1197
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	6 cut(s)	380, 491, 679, 709, 849, 1074
HpyCH4III	ACNGT	4 cut(s)	50, 508, 578, 1145
HpyCH4IV	ACGT	1 cut(s)	789
HpyCH4V	TGCA	9 cut(s)	40, 220, 308, 314, 581, 905, 976, 1025, 1171
HpyF10VI	GCNNNNNNNGC	9 cut(s)	305, 311, 396, 402, 405, 472, 716, 725, 1084
HpyF3I	CTNAG	2 cut(s)	363, 654
HpySE526I	ACGT	1 cut(s)	789
Hsp92II	CATG	7 cut(s)	44, 140, 272, 318, 348, 905, 991
HspAI	GCGC	2 cut(s)	160, 408
Ksp22I	TGATCA	1 cut(s)	1000
Kzo9I	GATC	1 cut(s)	1000
LmnI	GCTCC	3 cut(s)	415, 823, 850
Lsp1109I	GCAGC	6 cut(s)	286, 289, 292, 405, 727, 1183
LweI	GCATC	2 cut(s)	1034, 1158
MaeI	CTAG	4 cut(s)	117, 339, 692, 1149
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	2 cut(s)	427, 1136
MalI	GATC	1 cut(s)	1002
MboI	GATC	1 cut(s)	1000
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	4 cut(s)	112, 322, 455, 558
MlyI	GAGTC	4 cut(s)	431, 789, 829, 893
MmeI	TCCRAC	3 cut(s)	204, 337, 575
Mph1103I	ATGCAT	1 cut(s)	907
MseI	TTAA	1 cut(s)	101
MslI	CAYNNNNRTG	2 cut(s)	313, 900
MspA1I	CMGCKG	4 cut(s)	396, 475, 812, 1121
MspI	CCGG	1 cut(s)	279
Mva1269I	GAATGC	1 cut(s)	905
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	9 cut(s)	305, 311, 396, 402, 405, 472, 716, 725, 1084
NdeII	GATC	1 cut(s)	1000
NlaIII	CATG	7 cut(s)	44, 140, 272, 318, 348, 905, 991
NlaIV	GGNNCC	1 cut(s)	697
NmuCI	GTSAC	1 cut(s)	1136
NsiI	ATGCAT	1 cut(s)	907
NspI	RCATGY	4 cut(s)	44, 140, 272, 318
NspV	TTCGAA	1 cut(s)	702
PaqCI	CACCTGC	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	2 cut(s)	203, 708
PctI	GAATGC	1 cut(s)	905
PfeI	GAWTC	3 cut(s)	329, 469, 750
Pfl23II	CGTACG	1 cut(s)	508
PflFI	GACNNNGTC	1 cut(s)	205
PleI	GAGTC	4 cut(s)	430, 789, 829, 892
PpsI	GAGTC	4 cut(s)	430, 789, 829, 892
PspLI	CGTACG	1 cut(s)	508
PspN4I	GGNNCC	1 cut(s)	697
PspPI	GGNCC	2 cut(s)	1124, 1184
PsyI	GACNNNGTC	1 cut(s)	205
RsaI	GTAC	4 cut(s)	52, 510, 565, 1147
RsaNI	GTAC	4 cut(s)	51, 509, 564, 1146
RseI	CAYNNNNRTG	2 cut(s)	313, 900
SaqAI	TTAA	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	1000
Sau96I	GGNCC	2 cut(s)	1124, 1184
ScaI	AGTACT	2 cut(s)	565, 1147
SchI	GAGTC	4 cut(s)	431, 789, 829, 893
SduI	GDGCHC	1 cut(s)	583
SfaNI	GCATC	2 cut(s)	1034, 1158
SfcI	CTRYAG	1 cut(s)	439
SfuI	TTCGAA	1 cut(s)	702
SinI	GGWCC	1 cut(s)	1124
SmiMI	CAYNNNNRTG	2 cut(s)	313, 900
SmlI	CTYRAG	2 cut(s)	937, 1210
SmoI	CTYRAG	2 cut(s)	937, 1210
SpeI	ACTAGT	2 cut(s)	338, 1148
Sse9I	AATT	4 cut(s)	112, 322, 455, 558
SspMI	CTAG	4 cut(s)	117, 339, 692, 1149
TaaI	ACNGT	4 cut(s)	50, 508, 578, 1145
TaiI	ACGT	1 cut(s)	792
TaqI	TCGA	2 cut(s)	702, 887
TaqII	GACCGA	1 cut(s)	1096
TasI	AATT	4 cut(s)	112, 322, 455, 558
TatI	WGTACW	3 cut(s)	50, 563, 1145
TauI	GCSGC	8 cut(s)	393, 399, 408, 478, 653, 680, 719, 722
TfiI	GAWTC	3 cut(s)	329, 469, 750
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	2 cut(s)	583, 886
TseFI	GTSAC	1 cut(s)	1136
TseI	GCWGC	6 cut(s)	299, 302, 305, 393, 740, 1171
Tsp45I	GTSAC	1 cut(s)	1136
TspDTI	ATGAA	2 cut(s)	333, 903
TspGWI	ACGGA	3 cut(s)	159, 856, 1120
TspRI	CASTG	2 cut(s)	583, 886
Tth111I	GACNNNGTC	1 cut(s)	205
VneI	GTGCAC	1 cut(s)	579
VpaK11BI	GGWCC	1 cut(s)	1124
XapI	RAATTY	3 cut(s)	112, 322, 455
XbaI	TCTAGA	1 cut(s)	116
XceI	RCATGY	4 cut(s)	44, 140, 272, 318
XmiI	GTMKAC	1 cut(s)	1196
XspI	CTAG	4 cut(s)	117, 339, 692, 1149
ZrmI	AGTACT	2 cut(s)	565, 1147
Zsp2I	ATGCAT	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.