RLG00000018404

ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
29311392 .. 29313009
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018404

Sequence Viewer

Length: 1200 bp
ATGTGTTTTCTAAAGGTGGCGGATCCGAGCAGAGACAGAGACGACGACCGCGCCGCAGCGGCGGTGCAAGGAAATGAGACTGAGCAAACTCATGAACAGAGGGACCTTATCGAGGAGTGGCTGCTATTTGAGCCCCTGCTTTTTTCTCAGCAACAACGACGTGGTGGTGGTGGTAGTAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGAATATTAGCTTCGTCATCAATGCTGTTGCGGTTGGATAGGGAGAGGGAGATGTCGGCCATGGTTTCGGCTCTGACGCATGTGGTGACAGGAGAGGAGCAGACTAGGTTTGATGTGGTTAACGGTTCGGATTCGCCGGCGGGGAATGGTTTGTGCGGTGGCGTTGGGAGTAAGAGAGAAAGAGAAGAGGAAGGAGGTGGTGGTGGACAGAACATGTCTGAGTCGGTTTCAAGGCTTTGCAGAACATTTGGTGATTTTCCACAACAGGGCTCACCTTCATCCTCCTCTGTTTTTCCAGAAAGCTCGATCACAAGAACTCGAAGGACTACTAGCACTACACCACCTATACAAACAGCCTATGAATATAGTGCACCTCAATTATCAGAACAACCAATAAGGAGAAAATACAGAGGAGTAAGGCAGAGGCCATGGGGAAAATGGGCGGCTGAGATCAGAGACCCGTTCAAGGCTGCCAGAGTCTGGCTAGGCACATTCGACACAGCAGAAGCAGCCGCGCAAGCCTACGACACAGCCGCCCTGCGCTTCCGAGGCAACAAGGCAAAACTCAACTTTCCGGAAAACGTCAGACTCCGATCACTACCATCATCAGCTGCAGAAAATCCAATGACGACGCAACCTACAGTTTCGGGTTCTTCGAATGCCCTCCTGTCTATTCCTACATCCACCGAACCTATTGTTCACTCCCAAGTAGCTGCTTCATTCCAACAACAACGGCCTATGAGTCTTTATGATCAGATGGTTTTGTTATCTTCGTCTTCATCTCCATCAGCTACTTCTTCTTCTACACTCGCCTCCTCTGTTTCCTCTGCTTCTTCTTCGCCACCACCGCCTGCCTTTTCGTCACTTTTTAGTGCTCAGGCAACGTCACCGGTTGAGCTCAGACAAGCTACCGGTGATCAGAGTGGCGGAGCTGATTTTTCAGTGCAGCAGCAATGGTCAACGAGCTCCGGTCATTACAGTACTTCCTAG

Protein Analysis

400

Amino Acids

42.42

Weight (kDa)

5.93

Isoelectric Point (pI)

68.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 205 - 254 1.2e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 690
AccII CGCG 2 cut(s) 51, 725
AccIII TCCGGA 1 cut(s) 784
AclWI GGATC 2 cut(s) 17, 30
AcoI YGGCCR 1 cut(s) 267
AfaI GTAC 1 cut(s) 1192
AfiI CCNNNNNNNGG 4 cut(s) 112, 476, 676, 690
AflIII ACRYGT 1 cut(s) 423
AgeI ACCGGT 2 cut(s) 1099, 1121
AgsI TTSAA 2 cut(s) 441, 676
AjiI CACGTC 1 cut(s) 161
AluBI AGCT 9 cut(s) 221, 513, 821, 923, 1001, 1108, 1118, 1142, 1176
AluI AGCT 9 cut(s) 221, 513, 821, 923, 1001, 1108, 1118, 1142, 1176
Alw21I GWGCWC 4 cut(s) 583, 1087, 1110, 1178
Alw26I GTCTC 4 cut(s) 27, 33, 71, 660
Alw44I GTGCAC 1 cut(s) 579
AlwI GGATC 2 cut(s) 17, 30
AlwNI CAGNNNCTG 1 cut(s) 690
Aor13HI TCCGGA 1 cut(s) 784
AoxI GGCC 3 cut(s) 267, 635, 944
ApaLI GTGCAC 1 cut(s) 579
ApeKI GCWGC 8 cut(s) 56, 121, 680, 719, 821, 923, 1156, 1159
AsiGI ACCGGT 2 cut(s) 1099, 1121
AspLEI GCGC 3 cut(s) 53, 727, 753
AspS9I GGNCC 1 cut(s) 103
AsuHPI GGTGA 5 cut(s) 307, 473, 474, 1089, 1136
AsuII TTCGAA 1 cut(s) 866
AvaII GGWCC 1 cut(s) 103
BaeGI GKGCMC 1 cut(s) 583
BamHI GGATCC 1 cut(s) 22
BanII GRGCYC 4 cut(s) 135, 482, 1110, 1178
BbsI GAAGAC 1 cut(s) 978
Bbv12I GWGCWC 4 cut(s) 583, 1087, 1110, 1178
BbvI GCAGC 8 cut(s) 68, 108, 667, 731, 808, 910, 1168, 1171
BccI CCATC 3 cut(s) 820, 961, 1003
BceAI ACGGC 1 cut(s) 959
BclI TGATCA 2 cut(s) 961, 1126
BcoDI GTCTC 4 cut(s) 27, 33, 71, 660
BfaI CTAG 4 cut(s) 315, 540, 695, 1198
BfmI CTRYAG 2 cut(s) 822, 849
BglI GCCNNNNNGGC 1 cut(s) 59
BmcAI AGTACT 1 cut(s) 1192
Bme18I GGWCC 1 cut(s) 103
BmgBI CACGTC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 2 cut(s) 24, 104
BpiI GAAGAC 1 cut(s) 978
Bpu10I CCTNAGC 1 cut(s) 1086
Bpu14I TTCGAA 1 cut(s) 866
BsaI GGTCTC 1 cut(s) 660
BsaJI CCNNGG 3 cut(s) 270, 638, 757
BsaWI WCCGGW 4 cut(s) 784, 1099, 1121, 1178
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 476, 676, 690
Bse118I RCCGGY 3 cut(s) 346, 1099, 1121
Bse3DI GCAATG 1 cut(s) 1169
BseAI TCCGGA 1 cut(s) 784
BseDI CCNNGG 3 cut(s) 270, 638, 757
BseGI GGATG 2 cut(s) 488, 890
BseLI CCNNNNNNNGG 4 cut(s) 112, 476, 676, 690
BseMI GCAATG 1 cut(s) 1169
BseMII CTCAG 6 cut(s) 72, 161, 420, 648, 1100, 1123
BseRI GAGGAG 5 cut(s) 128, 320, 484, 636, 1015
BseSI GKGCMC 1 cut(s) 583
BseXI GCAGC 8 cut(s) 68, 108, 667, 731, 808, 910, 1168, 1171
BsgI GTGCAG 1 cut(s) 1175
Bsh1236I CGCG 2 cut(s) 51, 725
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 3 cut(s) 269, 637, 946
BshTI ACCGGT 2 cut(s) 1099, 1121
BsiEI CGRYCG 1 cut(s) 49
BsiHKAI GWGCWC 4 cut(s) 583, 1087, 1110, 1178
BsiSI CCGG 5 cut(s) 347, 785, 1100, 1122, 1179
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 4 cut(s) 112, 476, 676, 690
BsmAI GTCTC 4 cut(s) 27, 33, 71, 660
BsmBI CGTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 874
BsnI GGCC 3 cut(s) 269, 637, 946
Bso31I GGTCTC 1 cut(s) 660
Bsp119I TTCGAA 1 cut(s) 866
Bsp1286I GDGCHC 6 cut(s) 135, 482, 583, 1087, 1110, 1178
Bsp13I TCCGGA 1 cut(s) 784
Bsp143I GATC 6 cut(s) 22, 516, 660, 803, 961, 1126
Bsp19I CCATGG 2 cut(s) 270, 638
BspANI GGCC 3 cut(s) 269, 637, 946
BspCNI CTCAG 6 cut(s) 73, 160, 421, 649, 1099, 1122
BspEI TCCGGA 1 cut(s) 784
BspFNI CGCG 2 cut(s) 51, 725
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 24, 104
BspMAI CTGCAG 1 cut(s) 826
BspPI GGATC 2 cut(s) 17, 30
BspT104I TTCGAA 1 cut(s) 866
BspTNI GGTCTC 1 cut(s) 660
BsrDI GCAATG 1 cut(s) 1169
BsrFI RCCGGY 3 cut(s) 346, 1099, 1121
BssAI RCCGGY 3 cut(s) 346, 1099, 1121
BssECI CCNNGG 3 cut(s) 270, 638, 757
BssMI GATC 6 cut(s) 22, 516, 660, 803, 961, 1126
BssT1I CCWWGG 2 cut(s) 270, 638
Bst4CI ACNGT 3 cut(s) 335, 853, 1190
Bst6I CTCTTC 1 cut(s) 390
BstBI TTCGAA 1 cut(s) 866
BstC8I GCNNGC 3 cut(s) 348, 729, 1062
BstDEI CTNAG 6 cut(s) 81, 147, 429, 657, 1086, 1109
BstDSI CCRYGG 2 cut(s) 270, 638
BstENI CCTNNNNNAGG 1 cut(s) 110
BstF5I GGATG 2 cut(s) 488, 890
BstFNI CGCG 2 cut(s) 51, 725
BstHHI GCGC 3 cut(s) 53, 727, 753
BstKTI GATC 6 cut(s) 25, 519, 663, 806, 964, 1129
BstMAI GTCTC 4 cut(s) 27, 33, 71, 660
BstMBI GATC 6 cut(s) 22, 516, 660, 803, 961, 1126
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 6 cut(s) 59, 130, 719, 728, 759, 1057
BstNSI RCATGY 2 cut(s) 293, 427
BstSFI CTRYAG 2 cut(s) 822, 849
BstSLI GKGCMC 1 cut(s) 583
BstUI CGCG 2 cut(s) 51, 725
BstV1I GCAGC 8 cut(s) 68, 108, 667, 731, 808, 910, 1168, 1171
BstV2I GAAGAC 1 cut(s) 978
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BsuRI GGCC 3 cut(s) 269, 637, 946
BtgI CCRYGG 2 cut(s) 270, 638
BtrI CACGTC 1 cut(s) 161
BtsCI GGATG 2 cut(s) 488, 890
BtsIMutI CAGTG 1 cut(s) 1158
Cac8I GCNNGC 3 cut(s) 348, 729, 1062
CaiI CAGNNNCTG 1 cut(s) 690
CciI TCATGA 1 cut(s) 91
CfoI GCGC 3 cut(s) 53, 727, 753
Cfr10I RCCGGY 3 cut(s) 346, 1099, 1121
Cfr13I GGNCC 1 cut(s) 103
CseI GACGC 2 cut(s) 295, 850
Csp6I GTAC 1 cut(s) 1191
CspAI ACCGGT 2 cut(s) 1099, 1121
CviAII CATG 5 cut(s) 92, 271, 290, 424, 639
CviQI GTAC 1 cut(s) 1191
DdeI CTNAG 6 cut(s) 81, 147, 429, 657, 1086, 1109
DpnI GATC 6 cut(s) 24, 518, 662, 805, 963, 1128
DpnII GATC 6 cut(s) 22, 516, 660, 803, 961, 1126
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
EciI GGCGGA 2 cut(s) 35, 1152
Ecl136II GAGCTC 2 cut(s) 1108, 1176
Eco130I CCWWGG 2 cut(s) 270, 638
Eco24I GRGCYC 4 cut(s) 135, 482, 1110, 1178
Eco31I GGTCTC 1 cut(s) 660
Eco47I GGWCC 1 cut(s) 103
Eco53kI GAGCTC 2 cut(s) 1108, 1176
EcoICRI GAGCTC 2 cut(s) 1108, 1176
EcoNI CCTNNNNNAGG 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 103
EcoT14I CCWWGG 2 cut(s) 270, 638
EcoT38I GRGCYC 4 cut(s) 135, 482, 1110, 1178
ErhI CCWWGG 2 cut(s) 270, 638
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 5 cut(s) 95, 274, 293, 427, 642
FaqI GGGAC 1 cut(s) 116
FatI CATG 5 cut(s) 91, 270, 289, 423, 638
FauI CCCGC 1 cut(s) 343
FbaI TGATCA 2 cut(s) 961, 1126
FokI GGATG 2 cut(s) 475, 877
FriOI GRGCYC 4 cut(s) 135, 482, 1110, 1178
FspBI CTAG 4 cut(s) 315, 540, 695, 1198
GlaI GCGC 3 cut(s) 52, 726, 752
HaeIII GGCC 3 cut(s) 269, 637, 946
HapII CCGG 5 cut(s) 347, 785, 1100, 1122, 1179
HgaI GACGC 2 cut(s) 295, 850
HhaI GCGC 3 cut(s) 53, 727, 753
Hin1II CATG 5 cut(s) 95, 274, 293, 427, 642
Hin6I GCGC 3 cut(s) 51, 725, 751
HinP1I GCGC 3 cut(s) 51, 725, 751
HincII GTYRAC 2 cut(s) 331, 1170
HindII GTYRAC 2 cut(s) 331, 1170
HinfI GANTC 5 cut(s) 341, 431, 687, 798, 952
HpaI GTTAAC 1 cut(s) 331
HpaII CCGG 5 cut(s) 347, 785, 1100, 1122, 1179
HphI GGTGA 5 cut(s) 307, 473, 474, 1089, 1136
Hpy166II GTNNAC 5 cut(s) 331, 416, 581, 910, 1170
Hpy188III TCNNGA 3 cut(s) 92, 506, 785
Hpy8I GTNNAC 5 cut(s) 331, 416, 581, 910, 1170
Hpy99I CGWCG 3 cut(s) 47, 162, 844
HpyAV CCTTC 3 cut(s) 395, 495, 525
HpyCH4III ACNGT 3 cut(s) 335, 853, 1190
HpyCH4IV ACGT 3 cut(s) 160, 792, 1094
HpyCH4V TGCA 5 cut(s) 67, 450, 581, 824, 1156
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 130, 719, 728, 759, 1057
HpyF3I CTNAG 6 cut(s) 81, 147, 429, 657, 1086, 1109
HpySE526I ACGT 3 cut(s) 160, 792, 1094
Hsp92II CATG 5 cut(s) 95, 274, 293, 427, 642
HspAI GCGC 3 cut(s) 51, 725, 751
Kpn2I TCCGGA 1 cut(s) 784
KroI GCCGGC 1 cut(s) 346
KroNI GCCGGC 1 cut(s) 348
Ksp22I TGATCA 2 cut(s) 961, 1126
KspAI GTTAAC 1 cut(s) 331
Kzo9I GATC 6 cut(s) 22, 516, 660, 803, 961, 1126
LmnI GCTCC 3 cut(s) 307, 1139, 1181
Lsp1109I GCAGC 8 cut(s) 68, 108, 667, 731, 808, 910, 1168, 1171
MaeI CTAG 4 cut(s) 315, 540, 695, 1198
MaeII ACGT 3 cut(s) 160, 792, 1094
MaeIII GTNAC 3 cut(s) 295, 1071, 1095
MalI GATC 6 cut(s) 24, 518, 662, 805, 963, 1128
MboI GATC 6 cut(s) 22, 516, 660, 803, 961, 1126
MboII GAAGA 8 cut(s) 407, 855, 972, 978, 999, 1002, 1035, 1038
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 6 cut(s) 135, 482, 583, 1087, 1110, 1178
MluCI AATT 1 cut(s) 587
MlyI GAGTC 4 cut(s) 440, 696, 792, 961
MmeI TCCRAC 2 cut(s) 225, 958
MreI CGCCGGCG 1 cut(s) 346
MroI TCCGGA 1 cut(s) 784
MroNI GCCGGC 1 cut(s) 346
MseI TTAA 1 cut(s) 330
MspA1I CMGCKG 2 cut(s) 59, 821
MspI CCGG 5 cut(s) 347, 785, 1100, 1122, 1179
Mva1269I GAATGC 1 cut(s) 874
MvnI CGCG 2 cut(s) 51, 725
MwoI GCNNNNNNNGC 6 cut(s) 59, 130, 719, 728, 759, 1057
NaeI GCCGGC 1 cut(s) 348
NcoI CCATGG 2 cut(s) 270, 638
NdeII GATC 6 cut(s) 22, 516, 660, 803, 961, 1126
NgoMIV GCCGGC 1 cut(s) 346
NlaIII CATG 5 cut(s) 95, 274, 293, 427, 642
NlaIV GGNNCC 2 cut(s) 24, 104
NmuCI GTSAC 3 cut(s) 295, 1071, 1095
NspI RCATGY 2 cut(s) 293, 427
NspV TTCGAA 1 cut(s) 866
PagI TCATGA 1 cut(s) 91
PciI ACATGT 1 cut(s) 423
PcsI WCGNNNNNNNCGW 1 cut(s) 863
PctI GAATGC 1 cut(s) 874
PdiI GCCGGC 1 cut(s) 348
PfeI GAWTC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 690
PinAI ACCGGT 2 cut(s) 1099, 1121
PleI GAGTC 4 cut(s) 439, 695, 792, 960
PpsI GAGTC 4 cut(s) 439, 695, 792, 960
PpuMI RGGWCCY 1 cut(s) 103
PscI ACATGT 1 cut(s) 423
Psp124BI GAGCTC 2 cut(s) 1110, 1178
Psp5II RGGWCCY 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 24, 104
PspPI GGNCC 1 cut(s) 103
PspPPI RGGWCCY 1 cut(s) 103
PstI CTGCAG 1 cut(s) 826
PstNI CAGNNNCTG 1 cut(s) 690
PsuI RGATCY 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 1 cut(s) 1192
RsaNI GTAC 1 cut(s) 1191
SacI GAGCTC 2 cut(s) 1110, 1178
SaqAI TTAA 1 cut(s) 330
Sau3AI GATC 6 cut(s) 22, 516, 660, 803, 961, 1126
Sau96I GGNCC 1 cut(s) 103
ScaI AGTACT 1 cut(s) 1192
SchI GAGTC 4 cut(s) 440, 696, 792, 961
SduI GDGCHC 6 cut(s) 135, 482, 583, 1087, 1110, 1178
SfcI CTRYAG 2 cut(s) 822, 849
SfuI TTCGAA 1 cut(s) 866
SgrAI CRCCGGYG 1 cut(s) 346
SinI GGWCC 1 cut(s) 103
Sse9I AATT 1 cut(s) 587
SspI AATATT 1 cut(s) 216
SspMI CTAG 4 cut(s) 315, 540, 695, 1198
SstI GAGCTC 2 cut(s) 1110, 1178
StyI CCWWGG 2 cut(s) 270, 638
TaaI ACNGT 3 cut(s) 335, 853, 1190
TaiI ACGT 3 cut(s) 163, 795, 1097
TaqI TCGA 5 cut(s) 111, 515, 529, 705, 866
TasI AATT 1 cut(s) 587
TatI WGTACW 1 cut(s) 1190
TauI GCSGC 5 cut(s) 56, 62, 656, 725, 746
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 1 cut(s) 1158
TseFI GTSAC 3 cut(s) 295, 1071, 1095
TseI GCWGC 8 cut(s) 56, 121, 680, 719, 821, 923, 1156, 1159
Tsp45I GTSAC 3 cut(s) 295, 1071, 1095
TspDTI ATGAA 5 cut(s) 108, 477, 585, 918, 978
TspRI CASTG 1 cut(s) 1158
Van91I CCANNNNNTGG 1 cut(s) 690
VneI GTGCAC 1 cut(s) 579
VpaK11BI GGWCC 1 cut(s) 103
XagI CCTNNNNNAGG 1 cut(s) 110
XceI RCATGY 2 cut(s) 293, 427
XcmI CCANNNNNNNNNTGG 1 cut(s) 645
XspI CTAG 4 cut(s) 315, 540, 695, 1198
ZrmI AGTACT 1 cut(s) 1192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.