Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011515

Physical Location & Seq

Genomic Coordinates Forward (+)

59617476 .. 59619389

Gene Structure 1914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00125050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTGTTTTCTAAAGGTGGCGAATCCGAGCAGAGACAGAGACGATGAGCGCGCCGCCGCGGCGGGGCAAGGAAATGAGACTGAGCAAACTCATGAACAGAGAGACCTTATCGAAGAGTGGCTGCTATTTGAGCCCCTGCTTTTTTCTCAGCAACAACGACGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGAGGAATATTAGCTTCGTCGTCAATGCTGTTGCGGTTGGATAGGGAGAGGGAGATGTCGGTAATGGTTTCGGCTCTGACGCATGTGGTGAGAGGAGAGGAGCAGACTAGGTTTGATGTGGCTAACGGTTCGGATTCGCCGGCGGGGAATGGTTTGTGCGGTGGCGTTGGGAGTAAGAGAGAAAGAGAAGAGGAAGGAGGTGGTGGTGGACAGAACATGTCTGAGTCGGTTTCAAGGCTTTGCAGAACATTTGGTGATTTTCCACTCCAGGGCTCACCTTCATCCTCCTCTGTTTTTCCAGAAAACTCGATCACAAGAACTCGAAGGACTACTAGCACTACACCACCTATACAAACAGCATATGAATATAGTGCACCTCAATTATCAGAACAACCAATAAGGAGAAAATACAGAGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCGGCTGAGATCAGAGACCCGTTCAAAGCAGCCAGAGTCTGGCTAGGCACATTCGACACAGCAGAAGCAGCCGCGCAAGCCTACGACACAGCCGCCCTGCGCTTCCGAGGCAACAAGGCAAAACTCAACTTTCCGGAAAACGTCAGACTCCGATCACTACCATCATCAGCTGCAGAAAATCCAATGACGACGCAACCTACAGTTTCGGGTTCTTCGAATGCCCTCCTGTCTATTCCTACATCCACCGAACCTATTGTTCACTCCCAAGCAGCTGCTTCATTCCAACAACAACGGCCTATGAGTCTTTATGATCAGATGGTTTTGTTATCTTCGTCTTCATCTCCATCAGCTACTTCTTCTTCTACACTCGCCTCCTCTGTTTCCTCTGCTTCTTCTTCGCCACCACCGCCTGCCTTTTCGTCACTTTTTAGTGCTCAGGCAACGTCACCGGTTCAGCTCAGACAAACTACCGGTGATCAGAGTGGCGGAGCTGATGTTTCAGTGCAGCAGCAATGGTCAACGAGCTCCGGTCATTACAGTACTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0033993 GO:0034284 GO:0042221 GO:0043207 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

393

Amino Acids

42.01

Weight (kDa)

6.93

Isoelectric Point (pI)

67.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	199 - 248	1.2e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23350
malus_domestica	MD01G1016100.v1.1 MD15G1334900.v1.1
prunus_persica	Prupe.6G165700_v2.0.a1
pyrus_communis	pycom01g04730 pycom15g29040
rosa_chinensis	RchiOBHm_Chr2g0118211 RchiOBHm_Chr2g0118251
rosa_laevigata	RLG00000018404
rosa_multiflora	Rmu_sc0001925.1_g000007
rosa_roxburghii	Rroxscaffold_2G00125050 Rroxscaffold_2G00125730
rosa_rugosa	Rorug02G0217300.1
rosa_samantha	Rh2AG273500 Rh2BG285700 Rh2DG281500 Rh2DG299500 Rh2DG299600 Rh2DG299700
rosa_wichuraiana	Rw2G021770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	672
AccII	CGCG	3 cut(s)	51, 59, 707
AccIII	TCCGGA	1 cut(s)	766
AfaI	GTAC	1 cut(s)	1174
AfiI	CCNNNNNNNGG	3 cut(s)	63, 458, 672
AflIII	ACRYGT	1 cut(s)	405
AgeI	ACCGGT	2 cut(s)	1081, 1103
AgsI	TTSAA	2 cut(s)	423, 658
AjiI	CACGTC	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	456
AluBI	AGCT	7 cut(s)	203, 803, 905, 983, 1090, 1124, 1158
AluI	AGCT	7 cut(s)	203, 803, 905, 983, 1090, 1124, 1158
Alw21I	GWGCWC	3 cut(s)	565, 1069, 1160
Alw26I	GTCTC	5 cut(s)	27, 33, 71, 96, 642
Alw44I	GTGCAC	1 cut(s)	561
AlwNI	CAGNNNCTG	1 cut(s)	672
Aor13HI	TCCGGA	1 cut(s)	766
AoxI	GGCC	2 cut(s)	617, 926
ApaLI	GTGCAC	1 cut(s)	561
ApeKI	GCWGC	8 cut(s)	121, 662, 701, 803, 902, 905, 1138, 1141
AsiGI	ACCGGT	2 cut(s)	1081, 1103
AspLEI	GCGC	4 cut(s)	51, 53, 709, 735
AsuHPI	GGTGA	5 cut(s)	289, 455, 456, 1071, 1118
AsuII	TTCGAA	1 cut(s)	848
BaeGI	GKGCMC	1 cut(s)	565
BanII	GRGCYC	3 cut(s)	135, 464, 1160
BbsI	GAAGAC	1 cut(s)	960
Bbv12I	GWGCWC	3 cut(s)	565, 1069, 1160
BbvI	GCAGC	8 cut(s)	108, 674, 713, 790, 892, 914, 1150, 1153
BccI	CCATC	3 cut(s)	802, 943, 985
BceAI	ACGGC	1 cut(s)	941
BciT130I	CCWGG	1 cut(s)	458
BclI	TGATCA	2 cut(s)	943, 1108
BcoDI	GTCTC	5 cut(s)	27, 33, 71, 96, 642
BfaI	CTAG	4 cut(s)	297, 522, 677, 1180
BfmI	CTRYAG	2 cut(s)	804, 831
BglI	GCCNNNNNGGC	1 cut(s)	59
BmcAI	AGTACT	1 cut(s)	1174
Bme1390I	CCNGG	1 cut(s)	458
BmgBI	CACGTC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	960
BpmI	CTGGAG	1 cut(s)	440
Bpu10I	CCTNAGC	1 cut(s)	1068
Bpu14I	TTCGAA	1 cut(s)	848
BsaI	GGTCTC	2 cut(s)	96, 642
BsaJI	CCNNGG	4 cut(s)	57, 457, 620, 739
BsaWI	WCCGGW	4 cut(s)	766, 1081, 1103, 1160
BsaXI	ACNNNNNCTCC	2 cut(s)	1113, 1143
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 458, 672
Bse118I	RCCGGY	3 cut(s)	328, 1081, 1103
Bse3DI	GCAATG	1 cut(s)	1151
BseAI	TCCGGA	1 cut(s)	766
BseBI	CCWGG	1 cut(s)	458
BseDI	CCNNGG	4 cut(s)	57, 457, 620, 739
BseGI	GGATG	2 cut(s)	470, 872
BseLI	CCNNNNNNNGG	3 cut(s)	63, 458, 672
BseMI	GCAATG	1 cut(s)	1151
BseMII	CTCAG	6 cut(s)	72, 161, 402, 630, 1082, 1105
BsePI	GCGCGC	1 cut(s)	49
BseRI	GAGGAG	6 cut(s)	204, 297, 302, 466, 618, 997
BseSI	GKGCMC	1 cut(s)	565
BseXI	GCAGC	8 cut(s)	108, 674, 713, 790, 892, 914, 1150, 1153
BsgI	GTGCAG	1 cut(s)	1157
Bsh1236I	CGCG	3 cut(s)	51, 59, 707
BshFI	GGCC	2 cut(s)	619, 928
BshTI	ACCGGT	2 cut(s)	1081, 1103
BsiHKAI	GWGCWC	3 cut(s)	565, 1069, 1160
BsiSI	CCGG	5 cut(s)	329, 767, 1082, 1104, 1161
BslI	CCNNNNNNNGG	3 cut(s)	63, 458, 672
BsmAI	GTCTC	5 cut(s)	27, 33, 71, 96, 642
BsmBI	CGTCTC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	856
BsnI	GGCC	2 cut(s)	619, 928
Bso31I	GGTCTC	2 cut(s)	96, 642
Bsp119I	TTCGAA	1 cut(s)	848
Bsp1286I	GDGCHC	5 cut(s)	135, 464, 565, 1069, 1160
Bsp13I	TCCGGA	1 cut(s)	766
Bsp143I	GATC	5 cut(s)	498, 642, 785, 943, 1108
Bsp19I	CCATGG	1 cut(s)	620
BspANI	GGCC	2 cut(s)	619, 928
BspCNI	CTCAG	6 cut(s)	73, 160, 403, 631, 1081, 1104
BspEI	TCCGGA	1 cut(s)	766
BspFNI	CGCG	3 cut(s)	51, 59, 707
BspHI	TCATGA	1 cut(s)	91
BspMAI	CTGCAG	1 cut(s)	808
BspT104I	TTCGAA	1 cut(s)	848
BspTNI	GGTCTC	2 cut(s)	96, 642
BsrDI	GCAATG	1 cut(s)	1151
BsrFI	RCCGGY	3 cut(s)	328, 1081, 1103
BssAI	RCCGGY	3 cut(s)	328, 1081, 1103
BssECI	CCNNGG	4 cut(s)	57, 457, 620, 739
BssHII	GCGCGC	1 cut(s)	49
BssMI	GATC	5 cut(s)	498, 642, 785, 943, 1108
BssT1I	CCWWGG	1 cut(s)	620
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	3 cut(s)	317, 835, 1172
Bst6I	CTCTTC	2 cut(s)	108, 372
BstBI	TTCGAA	1 cut(s)	848
BstC8I	GCNNGC	4 cut(s)	51, 330, 711, 1044
BstDEI	CTNAG	6 cut(s)	81, 147, 411, 639, 1068, 1091
BstDSI	CCRYGG	2 cut(s)	57, 620
BstF5I	GGATG	2 cut(s)	470, 872
BstFNI	CGCG	3 cut(s)	51, 59, 707
BstHHI	GCGC	4 cut(s)	51, 53, 709, 735
BstKTI	GATC	5 cut(s)	501, 645, 788, 946, 1111
BstMAI	GTCTC	5 cut(s)	27, 33, 71, 96, 642
BstMBI	GATC	5 cut(s)	498, 642, 785, 943, 1108
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 130, 701, 710, 741, 1039
BstNI	CCWGG	1 cut(s)	458
BstNSI	RCATGY	2 cut(s)	275, 409
BstSCI	CCNGG	1 cut(s)	456
BstSFI	CTRYAG	2 cut(s)	804, 831
BstSLI	GKGCMC	1 cut(s)	565
BstUI	CGCG	3 cut(s)	51, 59, 707
BstV1I	GCAGC	8 cut(s)	108, 674, 713, 790, 892, 914, 1150, 1153
BstV2I	GAAGAC	1 cut(s)	960
BsuRI	GGCC	2 cut(s)	619, 928
BtgI	CCRYGG	2 cut(s)	57, 620
BtrI	CACGTC	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	470, 872
BtsIMutI	CAGTG	1 cut(s)	1140
Cac8I	GCNNGC	4 cut(s)	51, 330, 711, 1044
CaiI	CAGNNNCTG	1 cut(s)	672
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	4 cut(s)	51, 53, 709, 735
Cfr10I	RCCGGY	3 cut(s)	328, 1081, 1103
Cfr42I	CCGCGG	1 cut(s)	60
CseI	GACGC	2 cut(s)	277, 832
Csp6I	GTAC	1 cut(s)	1173
CspAI	ACCGGT	2 cut(s)	1081, 1103
CviAII	CATG	4 cut(s)	92, 272, 406, 621
CviQI	GTAC	1 cut(s)	1173
DdeI	CTNAG	6 cut(s)	81, 147, 411, 639, 1068, 1091
DpnI	GATC	5 cut(s)	500, 644, 787, 945, 1110
DpnII	GATC	5 cut(s)	498, 642, 785, 943, 1108
Eam1104I	CTCTTC	2 cut(s)	108, 372
EarI	CTCTTC	2 cut(s)	108, 372
EciI	GGCGGA	1 cut(s)	1134
Ecl136II	GAGCTC	1 cut(s)	1158
Eco130I	CCWWGG	1 cut(s)	620
Eco24I	GRGCYC	3 cut(s)	135, 464, 1160
Eco31I	GGTCTC	2 cut(s)	96, 642
Eco53kI	GAGCTC	1 cut(s)	1158
EcoICRI	GAGCTC	1 cut(s)	1158
EcoRII	CCWGG	1 cut(s)	456
EcoT14I	CCWWGG	1 cut(s)	620
EcoT38I	GRGCYC	3 cut(s)	135, 464, 1160
ErhI	CCWWGG	1 cut(s)	620
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	4 cut(s)	95, 275, 409, 624
FatI	CATG	4 cut(s)	91, 271, 405, 620
FauI	CCCGC	2 cut(s)	55, 325
FauNDI	CATATG	1 cut(s)	550
FbaI	TGATCA	2 cut(s)	943, 1108
FokI	GGATG	2 cut(s)	457, 859
FriOI	GRGCYC	3 cut(s)	135, 464, 1160
FspBI	CTAG	4 cut(s)	297, 522, 677, 1180
GlaI	GCGC	4 cut(s)	50, 52, 708, 734
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	2 cut(s)	619, 928
HapII	CCGG	5 cut(s)	329, 767, 1082, 1104, 1161
HgaI	GACGC	2 cut(s)	277, 832
HhaI	GCGC	4 cut(s)	51, 53, 709, 735
Hin1II	CATG	4 cut(s)	95, 275, 409, 624
Hin6I	GCGC	4 cut(s)	49, 51, 707, 733
HinP1I	GCGC	4 cut(s)	49, 51, 707, 733
HincII	GTYRAC	1 cut(s)	1152
HindII	GTYRAC	1 cut(s)	1152
HinfI	GANTC	6 cut(s)	22, 323, 413, 669, 780, 934
HpaII	CCGG	5 cut(s)	329, 767, 1082, 1104, 1161
HphI	GGTGA	5 cut(s)	289, 455, 456, 1071, 1118
Hpy166II	GTNNAC	4 cut(s)	398, 563, 892, 1152
Hpy188III	TCNNGA	3 cut(s)	92, 488, 767
Hpy8I	GTNNAC	4 cut(s)	398, 563, 892, 1152
Hpy99I	CGWCG	3 cut(s)	162, 211, 826
HpyAV	CCTTC	3 cut(s)	377, 477, 507
HpyCH4III	ACNGT	3 cut(s)	317, 835, 1172
HpyCH4IV	ACGT	3 cut(s)	160, 774, 1076
HpyCH4V	TGCA	4 cut(s)	432, 563, 806, 1138
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 130, 701, 710, 741, 1039
HpyF3I	CTNAG	6 cut(s)	81, 147, 411, 639, 1068, 1091
HpySE526I	ACGT	3 cut(s)	160, 774, 1076
Hsp92II	CATG	4 cut(s)	95, 275, 409, 624
HspAI	GCGC	4 cut(s)	49, 51, 707, 733
Kpn2I	TCCGGA	1 cut(s)	766
KroI	GCCGGC	1 cut(s)	328
KroNI	GCCGGC	1 cut(s)	330
Ksp22I	TGATCA	2 cut(s)	943, 1108
KspI	CCGCGG	1 cut(s)	60
Kzo9I	GATC	5 cut(s)	498, 642, 785, 943, 1108
LmnI	GCTCC	3 cut(s)	289, 1121, 1163
Lsp1109I	GCAGC	8 cut(s)	108, 674, 713, 790, 892, 914, 1150, 1153
MaeI	CTAG	4 cut(s)	297, 522, 677, 1180
MaeII	ACGT	3 cut(s)	160, 774, 1076
MaeIII	GTNAC	2 cut(s)	1053, 1077
MalI	GATC	5 cut(s)	500, 644, 787, 945, 1110
MboI	GATC	5 cut(s)	498, 642, 785, 943, 1108
MboII	GAAGA	9 cut(s)	125, 389, 837, 954, 960, 981, 984, 1017, 1020
MhlI	GDGCHC	5 cut(s)	135, 464, 565, 1069, 1160
MluCI	AATT	1 cut(s)	569
MlyI	GAGTC	4 cut(s)	422, 678, 774, 943
MmeI	TCCRAC	2 cut(s)	207, 940
MreI	CGCCGGCG	1 cut(s)	328
MroI	TCCGGA	1 cut(s)	766
MroNI	GCCGGC	1 cut(s)	328
MspA1I	CMGCKG	3 cut(s)	59, 803, 905
MspI	CCGG	5 cut(s)	329, 767, 1082, 1104, 1161
MspR9I	CCNGG	1 cut(s)	458
Mva1269I	GAATGC	1 cut(s)	856
MvaI	CCWGG	1 cut(s)	458
MvnI	CGCG	3 cut(s)	51, 59, 707
MwoI	GCNNNNNNNGC	6 cut(s)	59, 130, 701, 710, 741, 1039
NaeI	GCCGGC	1 cut(s)	330
NcoI	CCATGG	1 cut(s)	620
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	5 cut(s)	498, 642, 785, 943, 1108
NgoMIV	GCCGGC	1 cut(s)	328
NlaIII	CATG	4 cut(s)	95, 275, 409, 624
NmuCI	GTSAC	2 cut(s)	1053, 1077
NspI	RCATGY	2 cut(s)	275, 409
NspV	TTCGAA	1 cut(s)	848
PagI	TCATGA	1 cut(s)	91
PauI	GCGCGC	1 cut(s)	49
PciI	ACATGT	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	845
PctI	GAATGC	1 cut(s)	856
PdiI	GCCGGC	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	22, 323
PflMI	CCANNNNNTGG	1 cut(s)	672
PinAI	ACCGGT	2 cut(s)	1081, 1103
PleI	GAGTC	4 cut(s)	421, 677, 774, 942
PpsI	GAGTC	4 cut(s)	421, 677, 774, 942
PscI	ACATGT	1 cut(s)	405
Psp124BI	GAGCTC	1 cut(s)	1160
Psp6I	CCWGG	1 cut(s)	456
PspGI	CCWGG	1 cut(s)	456
PstI	CTGCAG	1 cut(s)	808
PstNI	CAGNNNCTG	1 cut(s)	672
PteI	GCGCGC	1 cut(s)	49
PvuII	CAGCTG	2 cut(s)	803, 905
RsaI	GTAC	1 cut(s)	1174
RsaNI	GTAC	1 cut(s)	1173
SacI	GAGCTC	1 cut(s)	1160
SacII	CCGCGG	1 cut(s)	60
Sau3AI	GATC	5 cut(s)	498, 642, 785, 943, 1108
ScaI	AGTACT	1 cut(s)	1174
SchI	GAGTC	4 cut(s)	422, 678, 774, 943
ScrFI	CCNGG	1 cut(s)	458
SduI	GDGCHC	5 cut(s)	135, 464, 565, 1069, 1160
SfcI	CTRYAG	2 cut(s)	804, 831
Sfr303I	CCGCGG	1 cut(s)	60
SfuI	TTCGAA	1 cut(s)	848
SgrAI	CRCCGGYG	1 cut(s)	328
SgrBI	CCGCGG	1 cut(s)	60
Sse9I	AATT	1 cut(s)	569
SspI	AATATT	1 cut(s)	198
SspMI	CTAG	4 cut(s)	297, 522, 677, 1180
SstI	GAGCTC	1 cut(s)	1160
StyD4I	CCNGG	1 cut(s)	456
StyI	CCWWGG	1 cut(s)	620
TaaI	ACNGT	3 cut(s)	317, 835, 1172
TaiI	ACGT	3 cut(s)	163, 777, 1079
TaqI	TCGA	5 cut(s)	111, 497, 511, 687, 848
TasI	AATT	1 cut(s)	569
TatI	WGTACW	1 cut(s)	1172
TauI	GCSGC	6 cut(s)	56, 59, 62, 638, 707, 728
TfiI	GAWTC	2 cut(s)	22, 323
TscAI	CASTG	1 cut(s)	1140
TseFI	GTSAC	2 cut(s)	1053, 1077
TseI	GCWGC	8 cut(s)	121, 662, 701, 803, 902, 905, 1138, 1141
Tsp45I	GTSAC	2 cut(s)	1053, 1077
TspDTI	ATGAA	5 cut(s)	108, 459, 567, 900, 960
TspRI	CASTG	1 cut(s)	1140
Van91I	CCANNNNNTGG	1 cut(s)	672
VneI	GTGCAC	1 cut(s)	561
XceI	RCATGY	2 cut(s)	275, 409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	627
XspI	CTAG	4 cut(s)	297, 522, 677, 1180
ZrmI	AGTACT	1 cut(s)	1174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.