Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0014815

Physical Location & Seq

Genomic Coordinates Reverse (-)

8108942 .. 8110942

Gene Structure 2001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1019300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCTTGGGAGCATCTCTTTAGTCAATATTGGGTGTTGGAAGCACTGCCCCTGGCATGTCAACCTTATTGACGAAAGGCTTGAAAATCTGATATACAGCAGGCAGCTCGATGCAAAGGAACTAGACAGGTTGGCGGTTGTAGCAATGGCTGGATTTGCAGCAGAAGGTCTGAAAGATGACAAAGTGACTGGCCAATCTGCTGATCTTTTCACTCTACAGGCCAAGAACTGGTGTGATGCCCCAGAAGTGATTCCAGCTTTGTTTGCCGGGTCACTCTTAAAAAACTACAAGGCGATTCATGAGGCCATAGTAACAGCTATGTCGAACAAGGCAACTGTTTTGGAATGCATTGAAGCAATTGAGAAAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.57

Weight (kDa)

5.29

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014815)

Species	Orthologous Gene IDs
malus_domestica	MD01G1019300.v1.1
rosa_laevigata	RLG00000001873 RLG00000009128 RLG00000023704
rosa_multiflora	Rmu_sc0000258.1_g000086
rosa_rugosa	Rorug06G0185700
rosa_samantha	Rh2AG338200 Rh4AG109300 Rh4BG405500 Rh4DG305200 Rh4DG324600 Rh5CG396800 Rh5DG211000 Rh6AG226900 Rh6BG232100 Rh6BG423400 Rh6DG226100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	228
AciI	CCGC	1 cut(s)	134
AcoI	YGGCCR	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	2 cut(s)	83, 353
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	4 cut(s)	106, 257, 317, 368
AluI	AGCT	4 cut(s)	106, 257, 317, 368
AoxI	GGCC	3 cut(s)	190, 219, 303
ApeKI	GCWGC	3 cut(s)	103, 158, 368
Asp700I	GAANNNNTTC	1 cut(s)	249
AsuC2I	CCSGG	1 cut(s)	268
BalI	TGGCCA	1 cut(s)	192
BbvI	GCAGC	3 cut(s)	115, 170, 355
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciT130I	CCWGG	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	268
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	215
BisI	GCNGC	3 cut(s)	104, 159, 369
BlsI	GCNGC	3 cut(s)	105, 160, 370
Bme1390I	CCNGG	2 cut(s)	52, 268
BmrFI	CCNGG	2 cut(s)	52, 268
BmsI	GCATC	3 cut(s)	21, 100, 226
BpuMI	CCSGG	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	193, 233
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	193, 233
BseXI	GCAGC	3 cut(s)	115, 170, 355
BshFI	GGCC	3 cut(s)	192, 221, 305
BsiSI	CCGG	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	3 cut(s)	192, 221, 305
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	3 cut(s)	192, 221, 305
BspHI	TCATGA	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	193, 233
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	101
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 155, 263
BstNI	CCWGG	1 cut(s)	52
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	2 cut(s)	50, 266
BstSFI	CTRYAG	1 cut(s)	215
BstV1I	GCAGC	3 cut(s)	115, 170, 355
BsuRI	GGCC	3 cut(s)	192, 221, 305
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	101
CciI	TCATGA	1 cut(s)	298
CviAII	CATG	2 cut(s)	56, 299
CviJI	RGCY	9 cut(s)	79, 106, 149, 192, 221, 257, 305, 317, 368
CviKI_1	RGCY	9 cut(s)	79, 106, 149, 192, 221, 257, 305, 317, 368
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	50
EcoT22I	ATGCAT	1 cut(s)	350
FaeI	CATG	2 cut(s)	59, 302
FaiI	YATR	5 cut(s)	57, 94, 300, 308, 320
FatI	CATG	2 cut(s)	55, 298
Fnu4HI	GCNGC	3 cut(s)	104, 159, 369
Fsp4HI	GCNGC	3 cut(s)	104, 159, 369
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	3 cut(s)	104, 159, 369
HaeIII	GGCC	3 cut(s)	192, 221, 305
HapII	CCGG	1 cut(s)	267
Hin1II	CATG	2 cut(s)	59, 302
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	2 cut(s)	250, 295
HpaII	CCGG	1 cut(s)	267
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	90, 171
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4V	TGCA	3 cut(s)	113, 158, 348
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 155, 263
Hsp92II	CATG	2 cut(s)	59, 302
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	9
Lsp1109I	GCAGC	3 cut(s)	115, 170, 355
LweI	GCATC	3 cut(s)	21, 100, 226
MaeI	CTAG	1 cut(s)	122
MaeIII	GTNAC	3 cut(s)	184, 270, 310
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MfeI	CAATTG	1 cut(s)	357
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	1 cut(s)	357
MluNI	TGGCCA	1 cut(s)	192
MmeI	TCCRAC	1 cut(s)	17
MnlI	CCTC	1 cut(s)	295
Mox20I	TGGCCA	1 cut(s)	192
Mph1103I	ATGCAT	1 cut(s)	350
MroXI	GAANNNNTTC	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	192
MseI	TTAA	1 cut(s)	278
Msp20I	TGGCCA	1 cut(s)	192
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	2 cut(s)	52, 268
MunI	CAATTG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	3 cut(s)	140, 155, 263
NciI	CCSGG	1 cut(s)	268
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	2 cut(s)	59, 302
NmuCI	GTSAC	2 cut(s)	184, 270
NsiI	ATGCAT	1 cut(s)	350
NspI	RCATGY	1 cut(s)	59
PagI	TCATGA	1 cut(s)	298
PctI	GAATGC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	250, 295
PflMI	CCANNNNNTGG	1 cut(s)	228
PkrI	GCNGC	3 cut(s)	105, 160, 370
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	3 cut(s)	104, 159, 369
Sau3AI	GATC	1 cut(s)	202
ScrFI	CCNGG	2 cut(s)	52, 268
SetI	ASST	7 cut(s)	66, 108, 131, 169, 259, 319, 370
SfaNI	GCATC	3 cut(s)	21, 100, 226
SfcI	CTRYAG	1 cut(s)	215
Sse9I	AATT	1 cut(s)	357
SsiI	CCGC	1 cut(s)	134
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	50, 266
TaaI	ACNGT	1 cut(s)	337
TaqI	TCGA	2 cut(s)	108, 323
TasI	AATT	1 cut(s)	357
TfiI	GAWTC	2 cut(s)	250, 295
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	1 cut(s)	50
TseFI	GTSAC	2 cut(s)	184, 270
TseI	GCWGC	3 cut(s)	103, 158, 368
Tsp45I	GTSAC	2 cut(s)	184, 270
TspDTI	ATGAA	1 cut(s)	287
TspRI	CASTG	1 cut(s)	50
Van91I	CCANNNNNTGG	1 cut(s)	228
XceI	RCATGY	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	1 cut(s)	122
Zsp2I	ATGCAT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.