Rh2AG338200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014815
Physical Location & Seq
Forward (+)
49023694 .. 49024172
479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG338200.1

Sequence Viewer

Length: 357 bp
ATGCAGAGCGTCGAGTCTTACGAGCACGGCCATGGCCGCCGCTCCTCTACCCTCCATCACCGCACGCGTATTTGCTTGCCTTTGTTGGTGGCGCATAGGTGGAGGCCTCATGGCTTCCTTATCTCTGGAGGTGATTGTCGTTTTGCGGCGAAAGCAATCCTGTACCTCTCCTTGACAATTTCACTTTGCTTCCACCTGATTTCGGTGATACTTGCCGAAATGTGGATGCAGATCATGTTGGTGATTGCTCCAAGAGGCTTGTGGGATCCAGGTCCAAATGTCTCCAGAACAGGAGGCGGTCAGACGTGGGATCTGGATGTTCTGGGCTTGGGTGTTCAGATCGTTGATGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.13

Weight (kDa)

8.64

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 42
AccII CGCG 1 cut(s) 67
AciI CCGC 5 cut(s) 37, 40, 61, 146, 297
AclWI GGATC 3 cut(s) 260, 273, 318
AcoI YGGCCR 2 cut(s) 28, 34
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 2 cut(s) 202, 222
AflIII ACRYGT 1 cut(s) 65
AjiI CACGTC 1 cut(s) 306
AjnI CCWGG 1 cut(s) 268
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 286
AlwI GGATC 3 cut(s) 260, 273, 318
AoxI GGCC 3 cut(s) 28, 34, 104
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 4 cut(s) 50, 143, 217, 253
AvaII GGWCC 1 cut(s) 272
BamHI GGATCC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 27
BccI CCATC 1 cut(s) 63
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 286
BisI GCNGC 3 cut(s) 37, 40, 147
BlsI GCNGC 3 cut(s) 38, 41, 148
Bme1390I CCNGG 1 cut(s) 270
Bme18I GGWCC 1 cut(s) 272
BmgBI CACGTC 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 216
BpmI CTGGAG 2 cut(s) 147, 268
BsaBI GATNNNNATC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 222
Bse8I GATNNNNATC 1 cut(s) 230
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 2 cut(s) 231, 322
BseJI GATNNNNATC 1 cut(s) 230
BseLI CCNNNNNNNGG 2 cut(s) 202, 222
BseRI GAGGAG 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 3 cut(s) 30, 36, 106
BsiHKAI GWGCWC 1 cut(s) 27
BslI CCNNNNNNNGG 2 cut(s) 202, 222
BsmAI GTCTC 1 cut(s) 286
BsnI GGCC 3 cut(s) 30, 36, 106
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 4 cut(s) 231, 265, 310, 339
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 5 cut(s) 37, 40, 61, 146, 297
BspANI GGCC 3 cut(s) 30, 36, 106
BspFNI CGCG 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 3 cut(s) 260, 273, 318
BsrBI CCGCTC 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 4 cut(s) 231, 265, 310, 339
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 65, 77
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 2 cut(s) 231, 322
BstFNI CGCG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 4 cut(s) 234, 268, 313, 342
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 4 cut(s) 231, 265, 310, 339
BstMWI GCNNNNNNNGC 2 cut(s) 36, 152
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 268
BstUI CGCG 1 cut(s) 67
BstX2I RGATCY 2 cut(s) 265, 310
BstYI RGATCY 2 cut(s) 265, 310
BsuRI GGCC 3 cut(s) 30, 36, 106
BtgI CCRYGG 1 cut(s) 31
BtrI CACGTC 1 cut(s) 306
BtsCI GGATG 2 cut(s) 231, 322
Cac8I GCNNGC 2 cut(s) 65, 77
CfoI GCGC 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 163
CviAII CATG 3 cut(s) 32, 110, 235
CviJI RGCY 6 cut(s) 30, 36, 106, 114, 258, 327
CviKI_1 RGCY 6 cut(s) 30, 36, 106, 114, 258, 327
CviQI GTAC 1 cut(s) 163
DpnI GATC 4 cut(s) 233, 267, 312, 341
DpnII GATC 4 cut(s) 231, 265, 310, 339
EaeI YGGCCR 2 cut(s) 28, 34
Eco130I CCWWGG 1 cut(s) 31
Eco147I AGGCCT 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 3 cut(s) 35, 113, 238
FaiI YATR 4 cut(s) 33, 96, 111, 236
FatI CATG 3 cut(s) 31, 109, 234
Fnu4HI GCNGC 3 cut(s) 37, 40, 147
FokI GGATG 2 cut(s) 238, 329
Fsp4HI GCNGC 3 cut(s) 37, 40, 147
GlaI GCGC 1 cut(s) 93
GluI GCNGC 3 cut(s) 37, 40, 147
GsuI CTGGAG 2 cut(s) 147, 268
HaeIII GGCC 3 cut(s) 30, 36, 106
HhaI GCGC 1 cut(s) 94
Hin1II CATG 3 cut(s) 35, 113, 238
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HinfI GANTC 1 cut(s) 14
HphI GGTGA 4 cut(s) 50, 143, 217, 253
Hpy188I TCNGA 2 cut(s) 303, 339
Hpy188III TCNNGA 3 cut(s) 126, 285, 314
Hpy99I CGWCG 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 2 cut(s) 4, 229
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 152
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 3 cut(s) 35, 113, 238
HspAI GCGC 1 cut(s) 92
Kzo9I GATC 4 cut(s) 231, 265, 310, 339
LmnI GCTCC 2 cut(s) 47, 253
LpnPI CCDG 9 cut(s) 111, 173, 209, 255, 276, 282, 298, 299, 308
LweI GCATC 1 cut(s) 216
MaeII ACGT 1 cut(s) 305
MalI GATC 4 cut(s) 233, 267, 312, 341
MbiI CCGCTC 1 cut(s) 42
MboI GATC 4 cut(s) 231, 265, 310, 339
MflI RGATCY 2 cut(s) 265, 310
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 1 cut(s) 177
MluI ACGCGT 1 cut(s) 65
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 8 cut(s) 55, 62, 96, 117, 122, 176, 248, 287
MslI CAYNNNNRTG 2 cut(s) 30, 239
MspR9I CCNGG 1 cut(s) 270
MvaI CCWGG 1 cut(s) 270
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 36, 152
NcoI CCATGG 1 cut(s) 31
NdeII GATC 4 cut(s) 231, 265, 310, 339
NlaIII CATG 3 cut(s) 35, 113, 238
NlaIV GGNNCC 1 cut(s) 267
PceI AGGCCT 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PkrI GCNGC 3 cut(s) 38, 41, 148
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 272
PsuI RGATCY 2 cut(s) 265, 310
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
RseI CAYNNNNRTG 2 cut(s) 30, 239
SatI GCNGC 3 cut(s) 37, 40, 147
Sau3AI GATC 4 cut(s) 231, 265, 310, 339
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 1 cut(s) 27
SetI ASST 6 cut(s) 101, 133, 168, 198, 274, 308
SfaNI GCATC 1 cut(s) 216
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 30, 239
Sse9I AATT 1 cut(s) 177
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 5 cut(s) 37, 40, 61, 146, 297
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 1 cut(s) 31
TaiI ACGT 1 cut(s) 308
TaqI TCGA 1 cut(s) 12
TasI AATT 1 cut(s) 177
TauI GCSGC 3 cut(s) 39, 42, 149
VpaK11BI GGWCC 1 cut(s) 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.