Rh6AG226900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0014815
Physical Location & Seq
Forward (+)
40895058 .. 40915197
20140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG226900.1

Sequence Viewer

Length: 876 bp
ATGCAGAGCGTCGAGCCAACCAAGCACGACCATGGTCTCCGCTTCCCTACTCTCCATCATCGCAGGCAATTTTGCTTGCCTTCGTTGGAGGAGGCCTCGCGGCTTCCTTGTCCTTCGAGATGTTTGACTTTTTCAGTCAAAAGCAACCCCTTCCTTTCTCTCCTTCCATCTGATTTCGATGTTGGCTATTCTTGCCGAGATGTGGATGCCGGTCTTGTTCGGTATAATTGCTCCAAGAATTTTGTGGGATCCAGGGGTAGTGGCGTGGATTCTAGTTGGCTTCTGGGTTGGAGAACTCCGGTGGCTGCGCTGGATCGAGACGACCTTGATGCAGACGGCGCCGACGTCGCTGGTTTGGCTGTTGCGTATTTGCTGGGTCTTCCTATTCTGGGTTATTCTCTAGATATTGGGAAAGAGCATGTAAATCTCATTTATCAAAGGCTGGAAAAGCTGATATACAGTGGGCAGCTTGATGCAAAGGAACTAGACAGGTTGGCTGTGGTAGCAATGGCTGGACTCGCAGCAGAAGGTCTGAAGTATGATAAAGTGATTGGTCAATCTGCTGATCTCTTCACTCTTCAGAGATTTATCAACAGAAGCAAGCCACAGCTTAGCAAAGATCAGCAACAAAATCTTACTAGATGGGCTTCGAAAAGATTAGTATTTCTCTCTGTCTTGATTGAAATGGAAAATGAGGAAGTGAGGACCTATGCAAGCAGAGTGGGATTGGAGGTTCGAAATGTGGAAGTGCGGGACGAGAACCTGAATATCATGGCAGACGTTCAAACAGGATCAAGAGCTTTGCCTACTTTCATCAACTATACTCATGATGGTATAGAGTGTCATTATTTTCAAGATAAACCCAAAAAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

32.66

Weight (kDa)

6.39

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 338
AccII CGCG 1 cut(s) 100
AciI CCGC 3 cut(s) 40, 100, 751
AclWI GGATC 4 cut(s) 243, 256, 321, 799
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 2 cut(s) 554, 563
AcyI GRCGYC 2 cut(s) 339, 345
AfiI CCNNNNNNNGG 2 cut(s) 202, 389
AgsI TTSAA 3 cut(s) 683, 785, 854
AjnI CCWGG 1 cut(s) 251
AloI GAACNNNNNNTCC 2 cut(s) 717, 749
AluBI AGCT 4 cut(s) 451, 469, 610, 800
AluI AGCT 4 cut(s) 451, 469, 610, 800
Alw26I GTCTC 2 cut(s) 41, 312
AlwI GGATC 4 cut(s) 243, 256, 321, 799
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 3 cut(s) 305, 466, 521
ApoI RAATTY 1 cut(s) 238
AspLEI GCGC 2 cut(s) 310, 341
AspS9I GGNCC 1 cut(s) 705
AsuII TTCGAA 2 cut(s) 650, 736
AvaII GGWCC 1 cut(s) 705
BamHI GGATCC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 371
BbvI GCAGC 3 cut(s) 292, 478, 533
BccI CCATC 4 cut(s) 63, 175, 636, 824
BceAI ACGGC 1 cut(s) 352
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BciT130I CCWGG 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 41, 312
BfaI CTAG 4 cut(s) 273, 401, 485, 639
BfoI RGCGCY 1 cut(s) 342
BisI GCNGC 4 cut(s) 101, 306, 467, 522
BlpI GCTNAGC 1 cut(s) 611
BlsI GCNGC 4 cut(s) 102, 307, 468, 523
Bme1390I CCNGG 1 cut(s) 253
Bme18I GGWCC 1 cut(s) 705
BmgT120I GGNCC 1 cut(s) 705
BmiI GGNNCC 2 cut(s) 250, 340
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 3 cut(s) 196, 319, 463
BoxI GACNNNNGTC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 371
BplI GAGNNNNNCTC 2 cut(s) 80, 112
Bpu1102I GCTNAGC 1 cut(s) 611
Bpu14I TTCGAA 2 cut(s) 650, 736
BsaHI GRCGYC 2 cut(s) 339, 345
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 31, 252
BsaWI WCCGGW 1 cut(s) 298
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 389
Bse118I RCCGGY 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 513
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 31, 252
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 202, 389
BseMI GCAATG 1 cut(s) 513
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 3 cut(s) 292, 478, 533
BseYI CCCAGC 1 cut(s) 373
Bsh1236I CGCG 1 cut(s) 100
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 338
BsiSI CCGG 2 cut(s) 210, 299
BslFI GGGAC 1 cut(s) 767
BslI CCNNNNNNNGG 2 cut(s) 202, 389
BsmAI GTCTC 2 cut(s) 41, 312
BsmBI CGTCTC 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 767
BsnI GGCC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 41
Bsp119I TTCGAA 2 cut(s) 650, 736
Bsp143I GATC 5 cut(s) 248, 313, 565, 619, 791
Bsp1720I GCTNAGC 1 cut(s) 611
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 3 cut(s) 40, 100, 751
BspANI GGCC 1 cut(s) 95
BspFNI CGCG 1 cut(s) 100
BspHI TCATGA 1 cut(s) 826
BspLI GGNNCC 2 cut(s) 250, 340
BspPI GGATC 4 cut(s) 243, 256, 321, 799
BspT104I TTCGAA 2 cut(s) 650, 736
BspT107I GGYRCC 1 cut(s) 338
BspTNI GGTCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 513
BsrFI RCCGGY 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 31, 252
BssMI GATC 5 cut(s) 248, 313, 565, 619, 791
BssNI GRCGYC 2 cut(s) 339, 345
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 461
Bst6I CTCTTC 2 cut(s) 575, 582
BstACI GRCGYC 2 cut(s) 339, 345
BstBI TTCGAA 2 cut(s) 650, 736
BstC8I GCNNGC 4 cut(s) 65, 77, 602, 715
BstDEI CTNAG 1 cut(s) 611
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 211
BstFNI CGCG 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 2 cut(s) 310, 341
BstKTI GATC 5 cut(s) 251, 316, 568, 622, 794
BstMAI GTCTC 2 cut(s) 41, 312
BstMBI GATC 5 cut(s) 248, 313, 565, 619, 791
BstMWI GCNNNNNNNGC 8 cut(s) 22, 192, 338, 347, 356, 448, 503, 518
BstNI CCWGG 1 cut(s) 253
BstNSI RCATGY 1 cut(s) 422
BstPAI GACNNNNGTC 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 251
BstUI CGCG 1 cut(s) 100
BstV1I GCAGC 3 cut(s) 292, 478, 533
BstV2I GAAGAC 1 cut(s) 371
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BsuRI GGCC 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 31
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 4 cut(s) 65, 77, 602, 715
CciI TCATGA 1 cut(s) 826
CfoI GCGC 2 cut(s) 310, 341
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 705
CspCI CAANNNNNGTGG 2 cut(s) 702, 737
CviAII CATG 4 cut(s) 32, 419, 772, 827
DdeI CTNAG 1 cut(s) 611
DinI GGCGCC 1 cut(s) 340
DpnI GATC 5 cut(s) 250, 315, 567, 621, 793
DpnII GATC 5 cut(s) 248, 313, 565, 619, 791
Eam1104I CTCTTC 2 cut(s) 575, 582
EarI CTCTTC 2 cut(s) 575, 582
Eco130I CCWWGG 1 cut(s) 31
Eco147I AGGCCT 1 cut(s) 95
Eco31I GGTCTC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 705
Eco57I CTGAAG 2 cut(s) 554, 563
EcoO109I RGGNCCY 1 cut(s) 705
EcoRII CCWGG 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 31
EgeI GGCGCC 1 cut(s) 340
EheI GGCGCC 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 31
Esp3I CGTCTC 1 cut(s) 312
FaeI CATG 4 cut(s) 35, 422, 775, 830
FaqI GGGAC 1 cut(s) 767
FatI CATG 4 cut(s) 31, 418, 771, 826
FauI CCCGC 1 cut(s) 744
Fnu4HI GCNGC 4 cut(s) 101, 306, 467, 522
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 4 cut(s) 101, 306, 467, 522
FspBI CTAG 4 cut(s) 273, 401, 485, 639
GlaI GCGC 2 cut(s) 309, 340
GluI GCNGC 4 cut(s) 101, 306, 467, 522
GsaI CCCAGC 1 cut(s) 377
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 1 cut(s) 95
HapII CCGG 2 cut(s) 210, 299
HhaI GCGC 2 cut(s) 310, 341
Hin1I GRCGYC 2 cut(s) 339, 345
Hin1II CATG 4 cut(s) 35, 422, 775, 830
Hin6I GCGC 2 cut(s) 308, 339
HinP1I GCGC 2 cut(s) 308, 339
HinfI GANTC 2 cut(s) 269, 516
HpaII CCGG 2 cut(s) 210, 299
Hpy188I TCNGA 3 cut(s) 172, 534, 582
Hpy188III TCNNGA 7 cut(s) 117, 317, 401, 676, 795, 827, 854
Hpy99I CGWCG 3 cut(s) 14, 347, 350
HpyAV CCTTC 5 cut(s) 90, 123, 160, 173, 521
HpyCH4III ACNGT 1 cut(s) 461
HpyCH4IV ACGT 2 cut(s) 345, 780
HpyCH4V TGCA 4 cut(s) 4, 332, 476, 713
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 192, 338, 347, 356, 448, 503, 518
HpyF3I CTNAG 1 cut(s) 611
HpySE526I ACGT 2 cut(s) 345, 780
Hsp92I GRCGYC 2 cut(s) 339, 345
Hsp92II CATG 4 cut(s) 35, 422, 775, 830
HspAI GCGC 2 cut(s) 308, 339
KasI GGCGCC 1 cut(s) 338
Kzo9I GATC 5 cut(s) 248, 313, 565, 619, 791
LmnI GCTCC 1 cut(s) 236
Lsp1109I GCAGC 3 cut(s) 292, 478, 533
LweI GCATC 3 cut(s) 196, 319, 463
MaeI CTAG 4 cut(s) 273, 401, 485, 639
MaeII ACGT 2 cut(s) 345, 780
MalI GATC 5 cut(s) 250, 315, 567, 621, 793
MboI GATC 5 cut(s) 248, 313, 565, 619, 791
MboII GAAGA 3 cut(s) 371, 562, 569
MflI RGATCY 1 cut(s) 248
MluCI AATT 3 cut(s) 68, 226, 238
Mly113I GGCGCC 1 cut(s) 339
MlyI GAGTC 1 cut(s) 510
MmeI TCCRAC 2 cut(s) 66, 269
MnlI CCTC 6 cut(s) 82, 85, 106, 688, 696, 724
MslI CAYNNNNRTG 1 cut(s) 30
MspI CCGG 2 cut(s) 210, 299
MspR9I CCNGG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 253
MvnI CGCG 1 cut(s) 100
MwoI GCNNNNNNNGC 8 cut(s) 22, 192, 338, 347, 356, 448, 503, 518
NarI GGCGCC 1 cut(s) 339
NcoI CCATGG 1 cut(s) 31
NdeII GATC 5 cut(s) 248, 313, 565, 619, 791
NlaIII CATG 4 cut(s) 35, 422, 775, 830
NlaIV GGNNCC 2 cut(s) 250, 340
NmeAIII GCCGAG 1 cut(s) 221
NspI RCATGY 1 cut(s) 422
NspV TTCGAA 2 cut(s) 650, 736
PagI TCATGA 1 cut(s) 826
PceI AGGCCT 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 4 cut(s) 102, 307, 468, 523
PleI GAGTC 1 cut(s) 510
PluTI GGCGCC 1 cut(s) 342
PpsI GAGTC 1 cut(s) 510
PpuMI RGGWCCY 1 cut(s) 705
PshAI GACNNNNGTC 1 cut(s) 33
Psp5II RGGWCCY 1 cut(s) 705
Psp6I CCWGG 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 2 cut(s) 250, 340
PspPI GGNCC 1 cut(s) 705
PspPPI RGGWCCY 1 cut(s) 705
PsuI RGATCY 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 30
SatI GCNGC 4 cut(s) 101, 306, 467, 522
Sau3AI GATC 5 cut(s) 248, 313, 565, 619, 791
Sau96I GGNCC 1 cut(s) 705
SchI GAGTC 1 cut(s) 510
ScrFI CCNGG 1 cut(s) 253
SfaNI GCATC 3 cut(s) 196, 319, 463
SfoI GGCGCC 1 cut(s) 340
SfuI TTCGAA 2 cut(s) 650, 736
SinI GGWCC 1 cut(s) 705
SmiMI CAYNNNNRTG 1 cut(s) 30
Sse9I AATT 3 cut(s) 68, 226, 238
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 3 cut(s) 40, 100, 751
SspDI GGCGCC 1 cut(s) 338
SspMI CTAG 4 cut(s) 273, 401, 485, 639
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 461
TaiI ACGT 2 cut(s) 348, 783
TaqI TCGA 6 cut(s) 12, 116, 177, 316, 650, 736
TasI AATT 3 cut(s) 68, 226, 238
TauI GCSGC 1 cut(s) 103
TfiI GAWTC 1 cut(s) 269
TscAI CASTG 1 cut(s) 466
TseI GCWGC 3 cut(s) 305, 466, 521
TspDTI ATGAA 1 cut(s) 802
TspRI CASTG 1 cut(s) 466
VpaK11BI GGWCC 1 cut(s) 705
XapI RAATTY 1 cut(s) 238
XbaI TCTAGA 1 cut(s) 400
XceI RCATGY 1 cut(s) 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XspI CTAG 4 cut(s) 273, 401, 485, 639
ZraI GACGTC 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.